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PMC:1359074 / 29344-29565 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T12514 116-118 TO denotes to
T12513 105-115 JJ denotes equivalent
T12512 91-104 RB denotes statistically
T12511 88-90 VB denotes is
T12510 84-87 NN denotes dpc
T12509 79-83 CD denotes 18.5
T12508 75-78 CC denotes and
T12507 71-74 NN denotes dpc
T12506 66-70 CD denotes 15.5
T12505 63-65 IN denotes at
T12504 58-62 NN denotes mice
T12503 53-57 JJ denotes null
T12502 48-52 NN denotes Sox6
T12501 37-47 JJ denotes homozygous
T12500 34-36 IN denotes in
T12499 27-33 NN denotes globin
T12498 24-26 JJ denotes ɛy
T12497 21-23 IN denotes of
T12496 15-20 NN denotes level
T12495 4-14 NN denotes expression
T12494 0-3 DT denotes The
T12533 219-220 -RRB- denotes )
T12532 218-219 CD denotes 1
T12531 211-217 NN denotes Figure
T12530 210-211 -LRB- denotes (
T12529 205-209 NN denotes mice
T12528 202-204 JJ denotes WT
T12527 191-201 JJ denotes homozygous
T12526 182-190 JJ denotes 18.5-dpc
T12525 178-181 CC denotes and
T12524 169-177 NN denotes 15.5-dpc
T12523 166-168 IN denotes of
T12522 159-165 NN denotes livers
T12521 155-158 DT denotes the
T12520 152-154 IN denotes in
T12519 141-151 NN denotes expression
T12518 132-140 NN denotes βmaj/min
T12517 129-131 IN denotes of
T12516 123-128 NN denotes level
T12515 119-122 DT denotes the
R8376 T12496 T12494 arg1Of level,The
R8377 T12496 T12495 arg1Of level,expression
R8378 T12496 T12497 arg1Of level,of
R8379 T12496 T12500 arg1Of level,in
R8380 T12496 T12511 arg1Of level,is
R8381 T12496 T12513 arg1Of level,equivalent
R8382 T12499 T12497 arg2Of globin,of
R8383 T12499 T12498 arg1Of globin,ɛy
R8384 T12504 T12500 arg2Of mice,in
R8385 T12504 T12501 arg1Of mice,homozygous
R8386 T12504 T12502 arg1Of mice,Sox6
R8387 T12504 T12503 arg1Of mice,null
R8388 T12504 T12505 arg1Of mice,at
R8389 T12507 T12506 arg1Of dpc,15.5
R8390 T12507 T12508 arg1Of dpc,and
R8391 T12508 T12505 arg2Of and,at
R8392 T12510 T12508 arg2Of dpc,and
R8393 T12510 T12509 arg1Of dpc,18.5
R8394 T12513 T12511 arg2Of equivalent,is
R8395 T12513 T12512 arg1Of equivalent,statistically
R8396 T12513 T12514 arg1Of equivalent,to
R8397 T12516 T12514 arg2Of level,to
R8398 T12516 T12515 arg1Of level,the
R8399 T12516 T12517 arg1Of level,of
R8400 T12519 T12518 arg1Of expression,βmaj/min
R8401 T12519 T12520 arg1Of expression,in
R8402 T12519 T12525 arg1Of expression,and
R8403 T12522 T12520 arg2Of livers,in
R8404 T12522 T12521 arg1Of livers,the
R8405 T12522 T12523 arg1Of livers,of
R8406 T12524 T12523 arg2Of 15.5-dpc,of
R8407 T12525 T12517 arg2Of and,of
R8408 T12529 T12525 arg2Of mice,and
R8409 T12529 T12526 arg1Of mice,18.5-dpc
R8410 T12529 T12527 arg1Of mice,homozygous
R8411 T12529 T12528 arg1Of mice,WT
R8412 T12529 T12530 arg1Of mice,(
R8413 T12531 T12530 arg2Of Figure,(
R8414 T12531 T12532 arg1Of Figure,1
R8415 T12533 T12530 arg3Of ),(

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T11513 137-140 Protein denotes min
T11512 132-136 Protein denotes βmaj
T11511 48-52 Protein denotes Sox6
T11510 24-33 Protein denotes ɛy globin

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T13270 48-52 http://www.uniprot.org/uniprot/P35712 denotes Sox6

GO-BP

Id Subject Object Predicate Lexical cue
T11213 27-33 http://purl.obolibrary.org/obo/GO_0005344 denotes globin

GO-MF

Id Subject Object Predicate Lexical cue
T11563 27-33 http://purl.obolibrary.org/obo/GO_0005344 denotes globin

sentences

Id Subject Object Predicate Lexical cue
T11174 0-221 Sentence denotes The expression level of ɛy globin in homozygous Sox6 null mice at 15.5 dpc and 18.5 dpc is statistically equivalent to the level of βmaj/min expression in the livers of 15.5-dpc and 18.5-dpc homozygous WT mice (Figure 1).
T223 0-221 Sentence denotes The expression level of ɛy globin in homozygous Sox6 null mice at 15.5 dpc and 18.5 dpc is statistically equivalent to the level of βmaj/min expression in the livers of 15.5-dpc and 18.5-dpc homozygous WT mice (Figure 1).

simple1

Id Subject Object Predicate Lexical cue
T11777 137-140 Protein denotes min
T11776 132-136 Protein denotes βmaj
T11775 48-52 Protein denotes Sox6
T11774 24-33 Protein denotes ɛy globin

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T15813 141-151 Gene_expression denotes expression
T15812 4-14 Gene_expression denotes expression
T15811 123-128 Negative_regulation denotes level
T15748 137-140 Protein denotes min
T15747 132-136 Protein denotes βmaj
T15746 48-52 Protein denotes Sox6
T15745 24-33 Protein denotes ɛy globin
R11051 T15745 T15812 themeOf ɛy globin,expression
R11052 T15747 T15813 themeOf βmaj,expression
R11053 T15748 T15813 themeOf min,expression
R11059 T15813 T15811 themeOf expression,level
R11060 T15813 T15811 themeOf expression,level

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T13404 4-14 Gene_expression denotes expression
T13403 141-151 Gene_expression denotes expression
T13402 53-57 Negative_regulation denotes null
T13338 137-140 Protein denotes min
T13337 132-136 Protein denotes βmaj
T13336 48-52 Protein denotes Sox6
T13335 24-33 Protein denotes ɛy globin
R9175 T13335 T13404 themeOf ɛy globin,expression
R9176 T13336 T13402 themeOf Sox6,null
R9177 T13337 T13403 themeOf βmaj,expression
R9179 T13338 T13403 themeOf min,expression
R9231 T13403 T13402 themeOf expression,null
R9234 T13403 T13402 themeOf expression,null

DLUT931

Id Subject Object Predicate Lexical cue
T13660 105-115 Positive_regulation denotes equivalent
T13659 141-151 Gene_expression denotes expression
T13658 53-57 Negative_regulation denotes null
T13657 37-47 Negative_regulation denotes homozygous
T13656 4-14 Gene_expression denotes expression
T13584 137-140 Protein denotes min
T13583 132-136 Protein denotes βmaj
T13582 48-52 Protein denotes Sox6
T13581 24-33 Protein denotes ɛy globin
R9329 T13581 T13656 themeOf ɛy globin,expression
R9331 T13582 T13657 themeOf Sox6,homozygous
R9333 T13582 T13658 themeOf Sox6,null
R9335 T13583 T13659 themeOf βmaj,expression
R9336 T13584 T13659 themeOf min,expression
R9337 T13659 T13660 themeOf expression,equivalent
R9338 T13659 T13660 themeOf expression,equivalent

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T15690 132-177 Gene_expression denotes βmaj/min expression in the livers of 15.5-dpc
T15597 24-26 Protein denotes ɛy
T15580 137-140 Protein denotes min
T15569 79-87 Entity denotes 18.5 dpc
T15543 24-33 Entity denotes ɛy globin
T15525 132-140 Protein denotes βmaj/min
T15508 205-220 Protein denotes mice (Figure 1)
T15461 37-52 Protein denotes homozygous Sox6
T15449 132-140 Protein denotes βmaj/min
T15652 53-62 Protein denotes null mice
T15623 66-74 Entity denotes 15.5 dpc
R10965 T15525 T15690 themeOf βmaj/min,βmaj/min expression in the livers of 15.5-dpc

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T14550 220-221 . denotes .
T14549 219-220 -RRB- denotes )
T14548 218-219 CD denotes 1
T14547 211-217 NN denotes Figure
T14546 210-211 -LRB- denotes (
T14545 205-209 NNS denotes mice
T14544 202-204 NNP denotes WT
T14543 191-201 JJ denotes homozygous
T14542 182-190 JJ denotes 18.5-dpc
T14541 178-181 CC denotes and
T14540 169-177 JJ denotes 15.5-dpc
T14539 166-168 IN denotes of
T14538 159-165 NNS denotes livers
T14537 155-158 DT denotes the
T14536 152-154 IN denotes in
T14535 141-151 NN denotes expression
T14534 137-140 NN denotes min
T14533 136-137 NN denotes /
T14532 132-136 NN denotes βmaj
T14531 129-131 IN denotes of
T14530 123-128 NN denotes level
T14529 119-122 DT denotes the
T14528 116-118 TO denotes to
T14527 105-115 JJ denotes equivalent
T14526 91-104 RB denotes statistically
T14525 88-90 VBZ denotes is
T14524 84-87 NN denotes dpc
T14523 79-83 CD denotes 18.5
T14522 75-78 CC denotes and
T14521 71-74 NN denotes dpc
T14520 66-70 CD denotes 15.5
T14519 63-65 IN denotes at
T14518 58-62 NNS denotes mice
T14517 53-57 NN denotes null
T14516 48-52 JJ denotes Sox6
T14515 37-47 JJ denotes homozygous
T14514 34-36 IN denotes in
T14513 27-33 NN denotes globin
T14512 24-26 JJ denotes ɛy
T14511 21-23 IN denotes of
T14510 15-20 NN denotes level
T14509 4-14 NN denotes expression
T14508 0-3 DT denotes The
R10063 T14508 T14510 det The,level
R10064 T14509 T14510 compound expression,level
R10065 T14510 T14525 nsubj level,is
R10067 T14511 T14510 prep of,level
R10068 T14512 T14513 amod ɛy,globin
R10069 T14513 T14511 pobj globin,of
R10071 T14514 T14513 prep in,globin
R10072 T14515 T14518 amod homozygous,mice
R10074 T14516 T14518 amod Sox6,mice
R10075 T14517 T14518 amod null,mice
R10076 T14518 T14514 pobj mice,in
R10078 T14519 T14510 prep at,level
R10079 T14520 T14524 nummod 15.5,dpc
R10080 T14521 T14520 npadvmod dpc,15.5
R10082 T14522 T14520 cc and,15.5
R10083 T14523 T14520 conj 18.5,15.5
R10085 T14524 T14519 pobj dpc,at
R10086 T14525 T14525 ROOT is,is
R10087 T14526 T14527 advmod statistically,equivalent
R10089 T14527 T14525 acomp equivalent,is
R10090 T14528 T14527 prep to,equivalent
R10091 T14529 T14530 det the,level
R10093 T14530 T14528 pobj level,to
R10094 T14531 T14530 prep of,level
R10096 T14532 T14535 amod βmaj,expression
R10097 T14533 T14534 compound /,min
R10098 T14534 T14535 compound min,expression
R10099 T14535 T14531 pobj expression,of
R10101 T14536 T14530 prep in,level
R10102 T14537 T14538 det the,livers
R10104 T14538 T14536 pobj livers,in
R10106 T14539 T14538 prep of,livers
R10108 T14540 T14545 amod 15.5-dpc,mice
R10109 T14541 T14540 cc and,15.5-dpc
R10110 T14542 T14540 conj 18.5-dpc,15.5-dpc
R10112 T14543 T14545 amod homozygous,mice
R10113 T14544 T14545 compound WT,mice
R10114 T14545 T14539 pobj mice,of
R10115 T14546 T14547 punct (,Figure
R10116 T14547 T14538 appos Figure,livers
R10118 T14548 T14547 nummod 1,Figure
R10119 T14549 T14547 punct ),Figure
R10120 T14550 T14525 punct .,is

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T13471 4-14 Gene_expression denotes expression
T13470 48-52 Protein denotes Sox6
T13469 24-33 Protein denotes ɛy globin
R9240 T13469 T13471 themeOf ɛy globin,expression

testone

Id Subject Object Predicate Lexical cue
T10830 137-140 Protein denotes min
T10829 132-136 Protein denotes βmaj
T10828 48-52 Protein denotes Sox6
T10827 24-33 Protein denotes ɛy globin
T10905 141-151 Gene_expression denotes expression
R7462 T10829 T10905 themeOf βmaj,expression
R7463 T10830 T10905 themeOf min,expression

test3

Id Subject Object Predicate Lexical cue
T11096 141-151 Gene_expression denotes expression
T11095 137-140 Protein denotes min
T11094 132-136 Protein denotes βmaj
T11093 48-52 Protein denotes Sox6
T11092 24-33 Protein denotes ɛy globin
T11091 4-14 Gene_expression denotes expression
T10975 137-140 Protein denotes min
T10974 132-136 Protein denotes βmaj
T10973 48-52 Protein denotes Sox6
T10972 24-33 Protein denotes ɛy globin
R7525 T11092 T11091 themeOf ɛy globin,expression
R7526 T11094 T11096 themeOf βmaj,expression
R7527 T11095 T11096 themeOf min,expression