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PMC:1359074 / 28996-29222 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T12476 224-225 -RRB- denotes )
T12475 223-224 CD denotes 5
T12474 216-222 NN denotes Figure
T12473 215-216 -LRB- denotes (
T12472 209-214 NN denotes liver
T12471 205-208 DT denotes the
T12470 202-204 IN denotes in
T12469 196-201 NN denotes place
T12468 190-195 VB denotes takes
T12467 185-189 WDT denotes that
T12466 170-184 NN denotes erythropoiesis
T12465 159-169 JJ denotes definitive
T12464 156-158 IN denotes of
T12463 146-155 NN denotes mechanism
T12462 136-145 NN denotes silencing
T12461 132-135 DT denotes the
T12460 129-131 IN denotes in
T12459 121-128 NN denotes defects
T12458 118-120 TO denotes to
T12457 114-117 IN denotes due
T12456 111-113 VB denotes is
T12455 106-110 NN denotes mice
T12454 99-105 JJ denotes mutant
T12453 93-98 NN denotes p100H
T12452 90-92 IN denotes in
T12451 83-89 NN denotes globin
T12450 80-82 JJ denotes ɛy
T12449 77-79 IN denotes of
T12448 66-76 NN denotes expression
T12447 55-65 JJ denotes persistent
T12446 51-54 DT denotes the
T12445 46-50 IN denotes that
T12444 40-45 VB denotes shows
T12443 32-39 RB denotes clearly
T12442 18-31 NN denotes hybridization
T12441 13-17 FW denotes situ
T12440 10-12 FW denotes in
T12439 8-9 -COMMA- denotes ,
T12438 0-8 RB denotes Moreover
R8321 T12441 T12440 arg1Of situ,in
R8322 T12442 T12441 arg1Of hybridization,situ
R8323 T12442 T12444 arg1Of hybridization,shows
R8324 T12444 T12438 arg1Of shows,Moreover
R8325 T12444 T12439 arg1Of shows,","
R8326 T12444 T12443 arg1Of shows,clearly
R8327 T12448 T12446 arg1Of expression,the
R8328 T12448 T12447 arg1Of expression,persistent
R8329 T12448 T12449 arg1Of expression,of
R8330 T12448 T12452 arg1Of expression,in
R8331 T12448 T12456 arg1Of expression,is
R8332 T12448 T12458 arg1Of expression,to
R8333 T12451 T12449 arg2Of globin,of
R8334 T12451 T12450 arg1Of globin,ɛy
R8335 T12455 T12452 arg2Of mice,in
R8336 T12455 T12453 arg1Of mice,p100H
R8337 T12455 T12454 arg1Of mice,mutant
R8338 T12456 T12444 arg2Of is,shows
R8339 T12456 T12445 arg1Of is,that
R8340 T12458 T12456 arg2Of to,is
R8341 T12458 T12457 arg1Of to,due
R8342 T12459 T12458 arg2Of defects,to
R8343 T12459 T12460 arg1Of defects,in
R8344 T12463 T12460 arg2Of mechanism,in
R8345 T12463 T12461 arg1Of mechanism,the
R8346 T12463 T12462 arg1Of mechanism,silencing
R8347 T12463 T12464 arg1Of mechanism,of
R8348 T12463 T12467 arg1Of mechanism,that
R8349 T12463 T12468 arg1Of mechanism,takes
R8350 T12466 T12464 arg2Of erythropoiesis,of
R8351 T12466 T12465 arg1Of erythropoiesis,definitive
R8352 T12468 T12470 arg1Of takes,in
R8353 T12469 T12468 arg2Of place,takes
R8354 T12472 T12470 arg2Of liver,in
R8355 T12472 T12471 arg1Of liver,the
R8356 T12472 T12473 arg1Of liver,(
R8357 T12474 T12473 arg2Of Figure,(
R8358 T12474 T12475 arg1Of Figure,5
R8359 T12476 T12473 arg3Of ),(

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T11507 80-89 Protein denotes ɛy globin

UBERON-AE

Id Subject Object Predicate Lexical cue
T11145 209-214 http://purl.obolibrary.org/obo/UBERON_0002107 denotes liver

GO-BP

Id Subject Object Predicate Lexical cue
T11234 170-184 http://purl.obolibrary.org/obo/GO_0030218 denotes erythropoiesis
T11230 159-184 http://purl.obolibrary.org/obo/GO_0060318 denotes definitive erythropoiesis
T11211 83-89 http://purl.obolibrary.org/obo/GO_0005344 denotes globin

GO-MF

Id Subject Object Predicate Lexical cue
T11561 83-89 http://purl.obolibrary.org/obo/GO_0005344 denotes globin

sentences

Id Subject Object Predicate Lexical cue
T11172 0-226 Sentence denotes Moreover, in situ hybridization clearly shows that the persistent expression of ɛy globin in p100H mutant mice is due to defects in the silencing mechanism of definitive erythropoiesis that takes place in the liver (Figure 5).
T221 0-226 Sentence denotes Moreover, in situ hybridization clearly shows that the persistent expression of ɛy globin in p100H mutant mice is due to defects in the silencing mechanism of definitive erythropoiesis that takes place in the liver (Figure 5).

simple1

Id Subject Object Predicate Lexical cue
T11771 80-89 Protein denotes ɛy globin

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T15808 66-76 Gene_expression denotes expression
T15742 80-89 Protein denotes ɛy globin
R11047 T15742 T15808 themeOf ɛy globin,expression

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T13399 66-76 Gene_expression denotes expression
T13332 80-89 Protein denotes ɛy globin
R9170 T13332 T13399 themeOf ɛy globin,expression

DLUT931

Id Subject Object Predicate Lexical cue
T13653 114-117 Positive_regulation denotes due
T13652 66-76 Gene_expression denotes expression
T13578 80-89 Protein denotes ɛy globin
R9324 T13578 T13652 themeOf ɛy globin,expression
R9332 T13652 T13653 themeOf expression,due

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T15685 51-89 Gene_expression denotes the persistent expression of ɛy globin
T15478 93-110 Protein denotes p100H mutant mice
T15462 77-89 Protein denotes of ɛy globin
R10971 T15462 T15685 themeOf of ɛy globin,the persistent expression of ɛy globin

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T14489 225-226 . denotes .
T14488 224-225 -RRB- denotes )
T14487 223-224 CD denotes 5
T14486 216-222 NN denotes Figure
T14485 215-216 -LRB- denotes (
T14484 209-214 NN denotes liver
T14483 205-208 DT denotes the
T14482 202-204 IN denotes in
T14481 196-201 NN denotes place
T14480 190-195 VBZ denotes takes
T14479 185-189 WDT denotes that
T14478 170-184 NNS denotes erythropoiesis
T14477 159-169 JJ denotes definitive
T14476 156-158 IN denotes of
T14475 146-155 NN denotes mechanism
T14474 136-145 VBG denotes silencing
T14473 132-135 DT denotes the
T14472 129-131 IN denotes in
T14471 121-128 NNS denotes defects
T14470 118-120 TO denotes to
T14469 114-117 JJ denotes due
T14468 111-113 VBZ denotes is
T14467 106-110 NNS denotes mice
T14466 99-105 JJ denotes mutant
T14465 93-98 JJ denotes p100H
T14464 90-92 IN denotes in
T14463 83-89 NN denotes globin
T14462 80-82 JJ denotes ɛy
T14461 77-79 IN denotes of
T14460 66-76 NN denotes expression
T14459 55-65 JJ denotes persistent
T14458 51-54 DT denotes the
T14457 46-50 IN denotes that
T14456 40-45 VBZ denotes shows
T14455 32-39 RB denotes clearly
T14454 18-31 NN denotes hybridization
T14453 13-17 NN denotes situ
T14452 10-12 IN denotes in
T14451 8-9 , denotes ,
T14450 0-8 RB denotes Moreover
R10003 T14463 T14461 pobj globin,of
R10005 T14464 T14463 prep in,globin
R10006 T14465 T14467 amod p100H,mice
R10008 T14466 T14467 amod mutant,mice
R10009 T14467 T14464 pobj mice,in
R10010 T14468 T14456 ccomp is,shows
R10011 T14469 T14468 acomp due,is
R10012 T14470 T14469 prep to,due
R10014 T14471 T14470 pobj defects,to
R10015 T14472 T14471 prep in,defects
R10016 T14473 T14475 det the,mechanism
R10018 T14474 T14475 amod silencing,mechanism
R10019 T14475 T14472 pobj mechanism,in
R10021 T14476 T14475 prep of,mechanism
R10022 T14477 T14478 amod definitive,erythropoiesis
R10023 T14478 T14476 pobj erythropoiesis,of
R10025 T14479 T14480 nsubj that,takes
R10026 T14480 T14475 relcl takes,mechanism
R10027 T14481 T14480 dobj place,takes
R10028 T14482 T14480 prep in,takes
R10030 T14483 T14484 det the,liver
R10031 T14484 T14482 pobj liver,in
R10033 T14485 T14486 punct (,Figure
R10034 T14486 T14480 npadvmod Figure,takes
R10035 T14487 T14486 nummod 5,Figure
R10036 T14488 T14486 punct ),Figure
R10038 T14489 T14456 punct .,shows
R10198 T14450 T14456 advmod Moreover,shows
R10201 T14451 T14456 punct ",",shows
R10205 T14452 T14456 prep in,shows
R10209 T14453 T14454 compound situ,hybridization
R10212 T14454 T14456 nsubj hybridization,shows
R10216 T14455 T14456 advmod clearly,shows
R10219 T14456 T14456 ROOT shows,shows
R10223 T14457 T14468 mark that,is
R10227 T14458 T14460 det the,expression
R10229 T14459 T14460 amod persistent,expression
R10233 T14460 T14468 nsubj expression,is
R10237 T14461 T14460 prep of,expression
R10241 T14462 T14463 amod ɛy,globin

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T13464 114-117 Positive_regulation denotes due
T13463 66-76 Gene_expression denotes expression
T13462 80-89 Protein denotes ɛy globin
R9233 T13462 T13463 themeOf ɛy globin,expression
R9235 T13463 T13464 themeOf expression,due

testone

Id Subject Object Predicate Lexical cue
T10824 80-89 Protein denotes ɛy globin

test3

Id Subject Object Predicate Lexical cue
T11087 80-89 Protein denotes ɛy globin
T11086 66-76 Gene_expression denotes expression
T10969 80-89 Protein denotes ɛy globin
R7522 T11087 T11086 themeOf ɛy globin,expression