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PMC:1359074 / 28789-28995 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T12437 204-205 -RRB- denotes )
T12436 203-204 CD denotes 2
T12435 196-202 NN denotes Figure
T12434 195-196 -LRB- denotes (
T12433 189-194 FW denotes vitro
T12432 186-188 FW denotes in
T12431 182-185 CC denotes and
T12430 180-181 -RRB- denotes )
T12429 179-180 CD denotes 1
T12428 172-178 NN denotes Figure
T12427 171-172 -LRB- denotes (
T12426 166-170 FW denotes vivo
T12425 163-165 FW denotes in
T12424 158-162 CC denotes both
T12423 147-157 NN denotes expression
T12422 140-146 NN denotes globin
T12421 137-139 JJ denotes ɛy
T12420 127-136 VB denotes represses
T12419 122-126 NN denotes Sox6
T12418 118-121 CC denotes and
T12417 116-117 -COMMA- denotes ,
T12416 115-116 -RRB- denotes )
T12415 114-115 CD denotes 6
T12414 107-113 NN denotes Figure
T12413 106-107 -LRB- denotes (
T12412 91-105 NN denotes erythropoiesis
T12411 89-90 -RRB- denotes )
T12410 80-89 JJ denotes primitive
T12409 76-79 RB denotes not
T12408 72-75 CC denotes but
T12407 71-72 -LRB- denotes (
T12406 60-70 JJ denotes definitive
T12405 55-59 IN denotes with
T12404 44-54 JJ denotes coincident
T12403 34-43 RB denotes spatially
T12402 30-33 CC denotes and
T12401 19-29 RB denotes temporally
T12400 16-18 VB denotes is
T12399 5-15 NN denotes expression
T12398 0-4 NN denotes Sox6
R8280 T12399 T12398 arg1Of expression,Sox6
R8281 T12399 T12400 arg1Of expression,is
R8282 T12399 T12404 arg1Of expression,coincident
R8283 T12400 T12418 arg1Of is,and
R8284 T12401 T12402 arg1Of temporally,and
R8285 T12403 T12402 arg2Of spatially,and
R8286 T12404 T12400 arg2Of coincident,is
R8287 T12404 T12401 arg1Of coincident,temporally
R8288 T12404 T12403 arg1Of coincident,spatially
R8289 T12404 T12405 arg1Of coincident,with
R8290 T12406 T12407 arg1Of definitive,(
R8291 T12410 T12407 arg2Of primitive,(
R8292 T12410 T12408 arg1Of primitive,but
R8293 T12410 T12409 arg1Of primitive,not
R8294 T12411 T12407 arg3Of ),(
R8295 T12412 T12405 arg2Of erythropoiesis,with
R8296 T12412 T12406 arg1Of erythropoiesis,definitive
R8297 T12412 T12413 arg1Of erythropoiesis,(
R8298 T12414 T12413 arg2Of Figure,(
R8299 T12414 T12415 arg1Of Figure,6
R8300 T12416 T12413 arg3Of ),(
R8301 T12418 T12417 arg1Of and,","
R8302 T12419 T12420 arg1Of Sox6,represses
R8303 T12420 T12418 arg2Of represses,and
R8304 T12423 T12421 arg1Of expression,ɛy
R8305 T12423 T12422 arg1Of expression,globin
R8306 T12423 T12426 arg1Of expression,vivo
R8307 T12423 T12427 arg1Of expression,(
R8308 T12423 T12431 arg1Of expression,and
R8309 T12426 T12424 arg1Of vivo,both
R8310 T12426 T12425 arg1Of vivo,in
R8311 T12428 T12427 arg2Of Figure,(
R8312 T12428 T12429 arg1Of Figure,1
R8313 T12430 T12427 arg3Of ),(
R8314 T12431 T12420 arg2Of and,represses
R8315 T12433 T12432 arg1Of vitro,in
R8316 T12435 T12431 arg2Of Figure,and
R8317 T12435 T12433 arg1Of Figure,vitro
R8318 T12435 T12434 arg2Of Figure,(
R8319 T12435 T12436 arg1Of Figure,2
R8320 T12437 T12434 arg3Of ),(

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T11506 137-146 Protein denotes ɛy globin
T11505 122-126 Protein denotes Sox6
T11504 0-4 Protein denotes Sox6

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T13268 122-126 http://www.uniprot.org/uniprot/P35712 denotes Sox6
T13267 0-4 http://www.uniprot.org/uniprot/P35712 denotes Sox6

GO-BP

Id Subject Object Predicate Lexical cue
T11243 80-105 http://purl.obolibrary.org/obo/GO_0060319 denotes primitive) erythropoiesis
T11233 91-105 http://purl.obolibrary.org/obo/GO_0030218 denotes erythropoiesis
T11210 140-146 http://purl.obolibrary.org/obo/GO_0005344 denotes globin

GO-MF

Id Subject Object Predicate Lexical cue
T11560 140-146 http://purl.obolibrary.org/obo/GO_0005344 denotes globin

sentences

Id Subject Object Predicate Lexical cue
T11171 0-206 Sentence denotes Sox6 expression is temporally and spatially coincident with definitive (but not primitive) erythropoiesis (Figure 6), and Sox6 represses ɛy globin expression both in vivo (Figure 1) and in vitro (Figure 2).
T220 0-206 Sentence denotes Sox6 expression is temporally and spatially coincident with definitive (but not primitive) erythropoiesis (Figure 6), and Sox6 represses ɛy globin expression both in vivo (Figure 1) and in vitro (Figure 2).

simple1

Id Subject Object Predicate Lexical cue
T11770 137-146 Protein denotes ɛy globin
T11769 122-126 Protein denotes Sox6
T11768 0-4 Protein denotes Sox6

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T15807 127-136 Negative_regulation denotes represses
T15806 147-157 Gene_expression denotes expression
T15805 5-15 Gene_expression denotes expression
T15741 137-146 Protein denotes ɛy globin
T15740 122-126 Protein denotes Sox6
T15739 0-4 Protein denotes Sox6
R11043 T15739 T15805 themeOf Sox6,expression
R11044 T15740 T15807 causeOf Sox6,represses
R11046 T15741 T15806 themeOf ɛy globin,expression
R11054 T15806 T15807 themeOf expression,represses

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T13398 5-15 Gene_expression denotes expression
T13397 147-157 Gene_expression denotes expression
T13396 127-136 Negative_regulation denotes represses
T13331 137-146 Protein denotes ɛy globin
T13330 122-126 Protein denotes Sox6
T13329 0-4 Protein denotes Sox6
R9167 T13329 T13398 themeOf Sox6,expression
R9168 T13330 T13396 causeOf Sox6,represses
R9169 T13331 T13397 themeOf ɛy globin,expression
R9222 T13397 T13396 themeOf expression,represses

DLUT931

Id Subject Object Predicate Lexical cue
T13651 127-136 Negative_regulation denotes represses
T13650 147-157 Gene_expression denotes expression
T13649 44-54 Negative_regulation denotes coincident
T13648 5-15 Gene_expression denotes expression
T13577 137-146 Protein denotes ɛy globin
T13576 122-126 Protein denotes Sox6
T13575 0-4 Protein denotes Sox6
R9320 T13575 T13648 themeOf Sox6,expression
R9322 T13576 T13651 causeOf Sox6,represses
R9323 T13577 T13650 themeOf ɛy globin,expression
R9328 T13648 T13649 themeOf expression,coincident
R9330 T13650 T13651 themeOf expression,represses

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T15694 122-188 Negative_regulation denotes Sox6 represses ɛy globin expression both in vivo (Figure 1) and in
T15688 137-157 Gene_expression denotes ɛy globin expression
T15563 137-157 Protein denotes ɛy globin expression
T15488 122-126 Protein denotes Sox6
T15450 0-59 Protein denotes Sox6 expression is temporally and spatially coincident with
T15613 140-146 Protein denotes globin
R10980 T15488 T15694 causeOf Sox6,Sox6 represses ɛy globin expression both in vivo (Figure 1) and in
R10996 T15613 T15688 themeOf globin,ɛy globin expression
R11010 T15688 T15694 themeOf ɛy globin expression,Sox6 represses ɛy globin expression both in vivo (Figure 1) and in

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T14449 205-206 . denotes .
T14448 204-205 -RRB- denotes )
T14447 203-204 CD denotes 2
T14446 196-202 NN denotes Figure
T14445 195-196 -LRB- denotes (
T14444 189-194 NN denotes vitro
T14443 186-188 IN denotes in
T14442 182-185 CC denotes and
T14441 180-181 -RRB- denotes )
T14440 179-180 CD denotes 1
T14439 172-178 NN denotes Figure
T14438 171-172 -LRB- denotes (
T14437 166-170 NN denotes vivo
T14436 163-165 IN denotes in
T14435 158-162 DT denotes both
T14434 147-157 NN denotes expression
T14433 140-146 NN denotes globin
T14432 137-139 JJ denotes ɛy
T14431 127-136 VBZ denotes represses
T14430 122-126 NNP denotes Sox6
T14429 118-121 CC denotes and
T14428 116-117 , denotes ,
T14427 115-116 -RRB- denotes )
T14426 114-115 CD denotes 6
T14425 107-113 NN denotes Figure
T14424 106-107 -LRB- denotes (
T14423 91-105 VBZ denotes erythropoiesis
T14422 89-90 -RRB- denotes )
T14421 80-89 JJ denotes primitive
T14420 76-79 RB denotes not
T14419 72-75 CC denotes but
T14418 71-72 -LRB- denotes (
T14417 60-70 JJ denotes definitive
T14416 55-59 IN denotes with
T14415 44-54 JJ denotes coincident
T14414 34-43 RB denotes spatially
T14413 30-33 CC denotes and
T14412 19-29 RB denotes temporally
T14411 16-18 VBZ denotes is
T14410 5-15 NN denotes expression
T14409 0-4 JJ denotes Sox6
R10051 T14409 T14410 amod Sox6,expression
R10056 T14410 T14411 nsubj expression,is
R10060 T14411 T14411 ROOT is,is
R10066 T14412 T14411 acomp temporally,is
R10070 T14413 T14412 cc and,temporally
R10073 T14414 T14412 conj spatially,temporally
R10077 T14415 T14412 conj coincident,temporally
R10081 T14416 T14411 prep with,is
R10084 T14417 T14416 pobj definitive,with
R10088 T14418 T14417 punct (,definitive
R10092 T14419 T14417 cc but,definitive
R10095 T14420 T14421 neg not,primitive
R10100 T14421 T14417 conj primitive,definitive
R10103 T14422 T14411 punct ),is
R10105 T14423 T14423 ROOT erythropoiesis,erythropoiesis
R10107 T14424 T14425 punct (,Figure
R10111 T14425 T14423 parataxis Figure,erythropoiesis
R10117 T14426 T14425 nummod 6,Figure
R10121 T14427 T14425 punct ),Figure
R10126 T14428 T14423 punct ",",erythropoiesis
R10130 T14429 T14423 cc and,erythropoiesis
R10133 T14430 T14431 nsubj Sox6,represses
R10134 T14431 T14423 conj represses,erythropoiesis
R10135 T14432 T14434 amod ɛy,expression
R10136 T14433 T14434 compound globin,expression
R10140 T14434 T14431 dobj expression,represses
R10143 T14435 T14436 preconj both,in
R10148 T14436 T14434 prep in,expression
R10151 T14437 T14436 pobj vivo,in
R10155 T14438 T14439 punct (,Figure
R10159 T14439 T14434 appos Figure,expression
R10162 T14440 T14439 nummod 1,Figure
R10165 T14441 T14439 punct ),Figure
R10168 T14442 T14431 cc and,represses
R10171 T14443 T14431 conj in,represses
R10175 T14444 T14446 amod vitro,Figure
R10179 T14445 T14446 punct (,Figure
R10183 T14446 T14443 pobj Figure,in
R10187 T14447 T14446 nummod 2,Figure
R10190 T14448 T14446 punct ),Figure
R10194 T14449 T14431 punct .,represses

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T13461 127-136 Negative_regulation denotes represses
T13460 147-157 Gene_expression denotes expression
T13459 5-15 Gene_expression denotes expression
T13458 137-146 Protein denotes ɛy globin
T13457 122-126 Protein denotes Sox6
T13456 0-4 Protein denotes Sox6
R9227 T13456 T13459 themeOf Sox6,expression
R9228 T13457 T13461 causeOf Sox6,represses
R9230 T13458 T13460 themeOf ɛy globin,expression
R9232 T13460 T13461 themeOf expression,represses

testone

Id Subject Object Predicate Lexical cue
T10823 137-146 Protein denotes ɛy globin
T10822 122-126 Protein denotes Sox6
T10821 0-4 Protein denotes Sox6
T10902 147-157 Gene_expression denotes expression
R7459 T10823 T10902 themeOf ɛy globin,expression

test3

Id Subject Object Predicate Lexical cue
T11085 147-157 Gene_expression denotes expression
T11084 137-146 Protein denotes ɛy globin
T11083 122-126 Protein denotes Sox6
T11082 0-4 Protein denotes Sox6
T10968 137-146 Protein denotes ɛy globin
T10967 122-126 Protein denotes Sox6
T10966 0-4 Protein denotes Sox6
R7520 T11084 T11085 themeOf ɛy globin,expression
R7521 T11085 T11083 themeOf expression,Sox6