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2_test

Id Subject Object Predicate Lexical cue
16462943-15721738-85760951 210-211 15721738 denotes 1
16462943-1425584-85760952 352-353 1425584 denotes 2
16462943-8078769-85760953 354-355 8078769 denotes 3
16462943-8404853-85760954 429-430 8404853 denotes 4
16462943-11504872-85760955 822-823 11504872 denotes 5
16462943-9755172-85760956 824-825 9755172 denotes 6
16462943-11818535-85760957 943-944 11818535 denotes 7
16462943-11818535-85760958 1174-1175 11818535 denotes 7
16462943-7567444-85760959 1391-1392 7567444 denotes 8
16462943-14988021-85760959 1391-1392 14988021 denotes 8
16462943-15527762-85760959 1391-1392 15527762 denotes 8
16462943-15846364-85760959 1391-1392 15846364 denotes 8
16462943-9755172-85760960 1409-1410 9755172 denotes 6
16462943-11702786-85760961 1414-1416 11702786 denotes 13
16462943-10760285-85760962 1431-1433 10760285 denotes 14
16462943-14530442-85760963 1434-1436 14530442 denotes 15
16462943-10760285-85760964 1522-1524 10760285 denotes 14
16462943-10760285-85760965 1660-1662 10760285 denotes 14
16462943-10760285-85760966 1859-1861 10760285 denotes 14
16462943-11310796-85760967 1917-1919 11310796 denotes 16
T25472 210-211 15721738 denotes 1
T92399 352-353 1425584 denotes 2
T83652 354-355 8078769 denotes 3
T27842 429-430 8404853 denotes 4
T61683 822-823 11504872 denotes 5
T79059 824-825 9755172 denotes 6
T88037 943-944 11818535 denotes 7
T40137 1174-1175 11818535 denotes 7
T45738 1391-1392 7567444 denotes 8
T82032 1391-1392 14988021 denotes 8
T33694 1391-1392 15527762 denotes 8
T38280 1391-1392 15846364 denotes 8
T90351 1409-1410 9755172 denotes 6
T9372 1414-1416 11702786 denotes 13
T69328 1431-1433 10760285 denotes 14
T86458 1434-1436 14530442 denotes 15
T16581 1522-1524 10760285 denotes 14
T66355 1660-1662 10760285 denotes 14
T42 1859-1861 10760285 denotes 14
T20259 1917-1919 11310796 denotes 16

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T2052 1979-1989 NN denotes phenotypes
T2051 1973-1978 JJ denotes other
T2050 1969-1972 DT denotes all
T2049 1966-1968 IN denotes in
T2048 1955-1965 VB denotes implicated
T2047 1952-1954 VB denotes is
T2046 1945-1951 NN denotes factor
T2045 1931-1944 NN denotes transcription
T2044 1926-1930 NN denotes Sox6
T2043 1922-1925 DT denotes the
T2042 1920-1921 -COMMA- denotes ,
T2041 1919-1920 -RRB- denotes ]
T2040 1917-1919 CD denotes 16
T2039 1916-1917 -LRB- denotes [
T2038 1903-1915 NN denotes pigmentation
T2037 1900-1902 IN denotes in
T2036 1893-1899 RB denotes solely
T2035 1883-1892 VB denotes functions
T2034 1878-1882 NN denotes gene
T2033 1876-1877 NN denotes p
T2032 1872-1875 DT denotes the
T2031 1864-1871 IN denotes Because
T2030 1861-1862 -RRB- denotes ]
T2029 1859-1861 CD denotes 14
T2028 1858-1859 -LRB- denotes [
T2027 1856-1857 -RRB- denotes )
T2026 1845-1856 NN denotes breakpoints
T2025 1833-1844 JJ denotes chromosomal
T2024 1829-1832 DT denotes the
T2023 1826-1828 IN denotes of
T2022 1814-1825 NN denotes nucleotides
T2021 1807-1813 CD denotes 50,000
T2020 1800-1806 IN denotes within
T2019 1795-1799 NN denotes gene
T2018 1789-1794 JJ denotes other
T2017 1786-1788 DT denotes no
T2016 1782-1785 CC denotes and
T2015 1781-1782 -LRB- denotes (
T1782 444-447 NN denotes Sox
T1781 442-443 -COMMA- denotes ,
T1780 433-442 RB denotes Therefore
T1779 430-431 -RRB- denotes ]
T1778 429-430 CD denotes 4
T1777 428-429 -LRB- denotes [
T1776 424-427 NN denotes DNA
T1775 421-423 IN denotes of
T1774 414-420 NN denotes groove
T1773 408-413 JJ denotes major
T1772 404-407 DT denotes the
T1771 397-403 VB denotes target
T1770 389-396 NN denotes factors
T1769 375-388 NN denotes transcription
T1768 369-374 JJ denotes other
T1767 364-368 JJ denotes most
T1766 358-363 IN denotes while
T1765 356-357 -COMMA- denotes ,
T1764 355-356 -RRB- denotes ]
T1763 352-355 CD denotes 2,3
T1762 351-352 -LRB- denotes [
T1761 343-350 NN denotes changes
T1760 328-342 JJ denotes conformational
T1759 322-327 JJ denotes local
T1758 319-321 TO denotes to
T1757 313-318 VB denotes leads
T1756 308-312 WDT denotes that
T1755 304-307 NN denotes DNA
T1754 300-303 DT denotes the
T1753 297-299 IN denotes of
T1752 292-296 NN denotes bend
T1751 284-291 JJ denotes 70°–85°
T1750 282-283 DT denotes a
T1749 276-281 VB denotes cause
T1748 272-275 CC denotes and
T1747 268-271 NN denotes DNA
T1746 265-267 IN denotes of
T1745 258-264 NN denotes groove
T1744 252-257 JJ denotes minor
T1743 248-251 DT denotes the
T1742 245-247 TO denotes to
T1741 240-244 VB denotes bind
T1740 232-239 NN denotes factors
T1739 218-231 NN denotes transcription
T1738 214-217 NN denotes Sox
T1737 211-212 -RRB- denotes ]
T1736 210-211 CD denotes 1
T1735 209-210 -LRB- denotes [
T1734 201-208 NN denotes binding
T1733 197-200 CC denotes and
T1732 185-196 NN denotes recognition
T1731 181-184 NN denotes DNA
T1730 178-180 IN denotes in
T1729 169-177 VB denotes involved
T1728 163-168 NN denotes acids
T1727 157-162 NN denotes amino
T1726 154-156 CD denotes 79
T1725 151-153 IN denotes of
T1724 140-150 VB denotes consisting
T1723 138-139 -COMMA- denotes ,
T1722 132-138 NN denotes domain
T1721 130-131 -RRB- denotes )
T1720 127-130 NN denotes HMG
T1719 126-127 -LRB- denotes (
T1718 120-125 NN denotes group
T1717 111-119 NN denotes mobility
T1716 106-110 JJ denotes high
T1715 96-105 VB denotes conserved
T1714 92-95 DT denotes the
T1713 89-91 IN denotes by
T1712 75-88 VB denotes characterized
T1711 68-74 NN denotes family
T1710 61-67 NN denotes factor
T1709 47-60 NN denotes transcription
T1708 43-46 NN denotes Sox
T1707 39-42 DT denotes the
T1706 36-38 IN denotes of
T1705 29-35 NN denotes member
T1972 1547-1552 NN denotes p100H
T1971 1543-1546 IN denotes for
T1970 1532-1542 JJ denotes homozygous
T1969 1527-1531 NN denotes Mice
T1968 1524-1525 -RRB- denotes ]
T1967 1522-1524 CD denotes 14
T1966 1521-1522 -LRB- denotes [
T1965 1510-1520 NN denotes laboratory
T1964 1506-1509 PRP-DOLLAR- denotes our
T1963 1503-1505 IN denotes in
T1962 1492-1502 VB denotes identified
T1961 1487-1491 VB denotes been
T1960 1476-1486 RB denotes previously
T1959 1472-1475 VB denotes has
T1958 1470-1471 -RRB- denotes )
T1957 1465-1470 NN denotes p100H
T1956 1464-1465 -LRB- denotes (
T1955 1458-1463 NN denotes mouse
T1954 1451-1457 JJ denotes mutant
T1953 1441-1450 JJ denotes Sox6-null
T1952 1439-1440 DT denotes A
T1951 1436-1437 -RRB- denotes ]
T1950 1431-1436 CD denotes 14,15
T1949 1430-1431 -LRB- denotes [
T1948 1423-1429 NN denotes muscle
T1947 1419-1422 CC denotes and
T1946 1417-1418 -COMMA- denotes ,
T1945 1416-1417 -RRB- denotes ]
T1944 1409-1416 CD denotes 6,12,13
T1943 1408-1409 -LRB- denotes [
T1942 1398-1407 NN denotes cartilage
T1941 1396-1397 -COMMA- denotes ,
T1940 1395-1396 -RRB- denotes ]
T1939 1391-1395 CD denotes 8–11
T1938 1390-1391 -LRB- denotes [
T1937 1383-1389 NN denotes system
T1936 1375-1382 JJ denotes nervous
T1935 1367-1374 JJ denotes central
T1934 1363-1366 DT denotes the
T1933 1360-1362 IN denotes of
T1932 1348-1359 NN denotes development
T1931 1344-1347 DT denotes the
T1930 1341-1343 IN denotes in
T1929 1336-1340 NN denotes role
T1928 1334-1335 DT denotes a
T1927 1328-1333 VB denotes plays
T1926 1323-1327 WDT denotes that
T1925 1314-1322 NN denotes molecule
T1924 1303-1313 JJ denotes regulatory
T1923 1293-1302 JJ denotes important
T1922 1290-1292 DT denotes an
T1921 1287-1289 VB denotes is
T1920 1282-1286 NN denotes Sox6
T1919 1277-1281 IN denotes that
T1918 1264-1276 VB denotes demonstrated
T1917 1259-1263 VB denotes have
T1916 1251-1258 NN denotes studies
T1915 1242-1250 JJ denotes previous
T1914 1240-1241 -COMMA- denotes ,
T1913 1230-1240 NN denotes expression
T1912 1225-1229 NN denotes gene
T1911 1214-1224 VB denotes regulating
T1910 1211-1213 IN denotes in
T1909 1201-1210 NN denotes functions
T1908 1196-1200 NN denotes Sox6
T1907 1192-1195 WRB denotes how
T1906 1189-1191 IN denotes of
T1905 1178-1188 RB denotes Regardless
T1904 1175-1176 -RRB- denotes ]
T1903 1174-1175 CD denotes 7
T1902 1173-1174 -LRB- denotes [
T1901 1164-1172 NN denotes proteins
T1900 1158-1163 DT denotes these
T1899 1155-1157 IN denotes of
T1898 1147-1154 NN denotes overlap
T1897 1136-1146 JJ denotes functional
T1896 1125-1135 VB denotes indicating
T1895 1123-1124 -COMMA- denotes ,
T1894 1115-1123 NN denotes splicing
T1893 1106-1114 VB denotes restored
T1892 1097-1105 NN denotes extracts
T1891 1093-1096 DT denotes the
T1890 1090-1092 IN denotes in
T1889 1086-1089 NN denotes Sry
T1888 1083-1085 CC denotes or
T1887 1081-1082 -COMMA- denotes ,
T1886 1077-1081 NN denotes Sox9
T1885 1075-1076 -COMMA- denotes ,
T1884 1071-1075 NN denotes Sox6
T1883 1064-1070 DT denotes either
T1882 1061-1063 IN denotes of
T1881 1054-1060 NN denotes domain
T1880 1050-1053 NN denotes HMG
T1879 1046-1049 DT denotes the
T1878 1043-1045 IN denotes of
T1877 1032-1042 NN denotes expression
T1876 1028-1031 CC denotes and
T1875 1026-1027 -COMMA- denotes ,
T1874 1016-1026 NN denotes substrates
T1873 1007-1015 JJ denotes multiple
T1872 1004-1006 IN denotes of
T1871 995-1003 NN denotes splicing
T1870 987-994 VB denotes blocked
T1869 978-986 NN denotes extracts
T1868 973-977 NN denotes cell
T1867 968-972 NN denotes HeLa
T1866 965-967 IN denotes in
T1865 960-964 NN denotes Sox6
T1864 957-959 IN denotes of
T1863 947-956 NN denotes Depletion
T1862 944-945 -RRB- denotes ]
T1861 943-944 CD denotes 7
T1860 942-943 -LRB- denotes [
T1859 933-941 NN denotes splicing
T1858 924-932 JJ denotes pre-mRNA
T1857 921-923 IN denotes in
T1856 908-920 VB denotes participates
T1855 903-907 WDT denotes that
T1854 896-902 NN denotes factor
T1853 887-895 NN denotes splicing
T1852 879-886 JJ denotes general
T1851 877-878 DT denotes a
T1850 874-876 IN denotes as
T1849 870-873 VB denotes act
T1848 867-869 TO denotes to
T1847 861-866 VB denotes shown
T1846 856-860 VB denotes been
T1845 851-855 RB denotes also
T1844 847-850 VB denotes has
T1843 842-846 NN denotes Sox6
T1842 840-841 -COMMA- denotes ,
T1841 828-840 RB denotes Intriguingly
T1840 825-826 -RRB- denotes ]
T1839 822-825 CD denotes 5,6
T1838 821-822 -LRB- denotes [
T1837 813-820 NN denotes context
T1836 804-812 NN denotes promoter
T1835 797-803 NN denotes target
T1834 793-796 PRP-DOLLAR- denotes its
T1833 789-792 CC denotes and
T1832 777-788 NN denotes interactors
T1831 773-776 PRP-DOLLAR- denotes its
T1830 770-772 IN denotes on
T1829 760-769 VB denotes depending
T1828 758-759 -COMMA- denotes ,
T1827 749-758 NN denotes repressor
T1826 747-748 DT denotes a
T1825 744-746 CC denotes or
T1824 734-743 NN denotes activator
T1823 731-733 DT denotes an
T1822 724-730 CC denotes either
T1821 721-723 IN denotes as
T1820 717-720 VB denotes act
T1819 714-716 TO denotes to
T1818 709-713 JJ denotes able
T1817 706-708 VB denotes be
T1816 703-705 TO denotes to
T1815 694-702 VB denotes reported
T1814 689-693 VB denotes been
T1813 685-688 VB denotes has
T1812 680-684 NN denotes Sox6
T1811 669-678 NN denotes complexes
T1810 656-668 NN denotes multiprotein
T1809 648-655 VB denotes defined
T1808 637-647 RB denotes sterically
T1807 635-636 -COMMA- denotes ,
T1806 629-635 JJ denotes active
T1805 616-628 RB denotes biologically
T1804 611-615 IN denotes into
T1803 603-610 NN denotes factors
T1802 589-602 NN denotes transcription
T1801 579-588 JJ denotes DNA-bound
T1800 573-578 JJ denotes other
T1799 562-572 VB denotes assembling
T1798 558-561 CC denotes and
T1797 548-557 NN denotes structure
T1796 538-547 NN denotes chromatin
T1795 532-537 JJ denotes local
T1794 521-531 VB denotes organizing
T1793 518-520 IN denotes by
T1792 509-517 NN denotes proteins
T1791 495-508 JJ denotes architectural
T1790 492-494 IN denotes as
T1789 483-491 NN denotes function
T1788 477-482 PRP-DOLLAR- denotes their
T1787 474-476 IN denotes of
T1786 469-473 NN denotes part
T1784 457-460 MD denotes may
T1783 448-456 NN denotes proteins
T2006 1738-1746 VB denotes disrupts
T2005 1733-1737 WDT denotes that
T2004 1723-1732 NN denotes inversion
T2003 1721-1722 CD denotes 7
T2002 1710-1720 NN denotes Chromosome
T2001 1708-1709 DT denotes a
T2000 1703-1707 IN denotes with
T1999 1692-1702 VB denotes associated
T1998 1689-1691 VB denotes is
T1997 1682-1688 NN denotes allele
T1996 1675-1681 JJ denotes mutant
T1995 1669-1674 NN denotes p100H
T1994 1665-1668 DT denotes The
T1993 1662-1663 -RRB- denotes ]
T1992 1660-1662 CD denotes 14
T1991 1659-1660 -LRB- denotes [
T1990 1653-1658 NN denotes birth
T1989 1647-1652 IN denotes after
T1988 1644-1646 NN denotes wk
T1987 1642-1643 CD denotes 2
T1986 1635-1641 IN denotes within
T1985 1631-1634 VB denotes die
T1984 1627-1630 CC denotes and
T1983 1625-1626 -COMMA- denotes ,
T1982 1620-1625 NN denotes block
T1981 1614-1619 NN denotes heart
T1980 1595-1613 JJ denotes arterioventricular
T1979 1591-1594 CC denotes and
T1978 1582-1590 NN denotes myopathy
T1977 1574-1581 VB denotes develop
T1976 1572-1573 -COMMA- denotes ,
T1975 1566-1572 NN denotes growth
T1974 1558-1565 VB denotes delayed
T1973 1553-1557 VB denotes show
T2014 1776-1780 NN denotes gene
T2013 1771-1775 NN denotes Sox6
T2012 1767-1770 DT denotes the
T2011 1763-1766 CC denotes and
T2010 1758-1762 NN denotes gene
T2009 1756-1757 NN denotes p
T2008 1752-1755 DT denotes the
T2007 1747-1751 CC denotes both
T1704 27-28 DT denotes a
T1703 24-26 VB denotes is
T1702 22-23 -RRB- denotes )
T1701 18-22 NN denotes Sox6
T1700 17-18 -LRB- denotes (
T1699 13-16 NN denotes box
T1698 9-12 NN denotes HMG
T1697 4-8 NN denotes type
T1696 0-3 NN denotes Sry
T1785 461-468 VB denotes perform
R811 T1705 T1704 arg1Of member,a
R812 T1705 T1706 arg1Of member,of
R813 T1711 T1706 arg2Of family,of
R814 T1711 T1707 arg1Of family,the
R815 T1711 T1708 arg1Of family,Sox
R816 T1711 T1709 arg1Of family,transcription
R817 T1711 T1710 arg1Of family,factor
R818 T1711 T1712 arg2Of family,characterized
R819 T1720 T1719 arg2Of HMG,(
R820 T1721 T1719 arg3Of ),(
R821 T1722 T1712 arg1Of domain,characterized
R822 T1722 T1713 arg2Of domain,by
R823 T1722 T1714 arg1Of domain,the
R824 T1722 T1715 arg2Of domain,conserved
R825 T1722 T1716 arg1Of domain,high
R826 T1722 T1717 arg1Of domain,mobility
R827 T1722 T1718 arg1Of domain,group
R828 T1722 T1719 arg1Of domain,(
R829 T1722 T1723 arg1Of domain,","
R830 T1722 T1724 arg1Of domain,consisting
R831 T1724 T1725 arg1Of consisting,of
R832 T1728 T1725 arg2Of acids,of
R833 T1728 T1726 arg1Of acids,79
R834 T1728 T1727 arg1Of acids,amino
R835 T1728 T1729 arg2Of acids,involved
R836 T1729 T1730 arg1Of involved,in
R837 T1729 T1735 arg1Of involved,[
R838 T1732 T1733 arg1Of recognition,and
R839 T1733 T1730 arg2Of and,in
R840 T1733 T1731 arg1Of and,DNA
R841 T1734 T1733 arg2Of binding,and
R842 T1736 T1735 arg2Of 1,[
R843 T1737 T1735 arg3Of ],[
R844 T1740 T1738 arg1Of factors,Sox
R845 T1740 T1739 arg1Of factors,transcription
R846 T1740 T1741 arg1Of factors,bind
R847 T1740 T1749 arg1Of factors,cause
R848 T1741 T1742 arg1Of bind,to
R849 T1741 T1748 arg1Of bind,and
R850 T1745 T1742 arg2Of groove,to
R851 T1745 T1743 arg1Of groove,the
R852 T1745 T1744 arg1Of groove,minor
R853 T1745 T1746 arg1Of groove,of
R854 T1747 T1746 arg2Of DNA,of
R855 T1749 T1748 arg2Of cause,and
R856 T1752 T1749 arg2Of bend,cause
R857 T1752 T1750 arg1Of bend,a
R858 T1752 T1751 arg1Of bend,70°–85°
R859 T1752 T1753 arg1Of bend,of
R860 T1755 T1753 arg2Of DNA,of
R861 T1755 T1754 arg1Of DNA,the
R862 T1755 T1756 arg1Of DNA,that
R863 T1755 T1757 arg1Of DNA,leads
R864 T1757 T1758 arg1Of leads,to
R865 T1757 T1765 arg1Of leads,","
R866 T1757 T1766 arg1Of leads,while
R867 T1761 T1758 arg2Of changes,to
R868 T1761 T1759 arg1Of changes,local
R869 T1761 T1760 arg1Of changes,conformational
R870 T1761 T1762 arg1Of changes,[
R871 T1763 T1762 arg2Of "2,3",[
R872 T1764 T1762 arg3Of ],[
R873 T1770 T1767 arg1Of factors,most
R874 T1770 T1768 arg1Of factors,other
R875 T1770 T1769 arg1Of factors,transcription
R876 T1770 T1771 arg1Of factors,target
R877 T1771 T1766 arg2Of target,while
R878 T1771 T1777 arg1Of target,[
R879 T1774 T1771 arg2Of groove,target
R880 T1774 T1772 arg1Of groove,the
R881 T1774 T1773 arg1Of groove,major
R882 T1774 T1775 arg1Of groove,of
R883 T1776 T1775 arg2Of DNA,of
R884 T1778 T1777 arg2Of 4,[
R885 T1779 T1777 arg3Of ],[
R886 T1783 T1782 arg1Of proteins,Sox
R887 T1783 T1784 arg1Of proteins,may
R888 T1783 T1785 arg1Of proteins,perform
R889 T1783 T1794 arg1Of proteins,organizing
R890 T1785 T1780 arg1Of perform,Therefore
R891 T1785 T1781 arg1Of perform,","
R892 T1785 T1784 arg2Of perform,may
R893 T1785 T1790 arg1Of perform,as
R894 T1785 T1793 arg1Of perform,by
R895 T1786 T1785 arg2Of part,perform
R896 T1786 T1787 arg1Of part,of
R897 T1789 T1787 arg2Of function,of
R898 T1789 T1788 arg1Of function,their
R899 T1792 T1790 arg2Of proteins,as
R900 T1792 T1791 arg1Of proteins,architectural
R901 T1794 T1793 arg2Of organizing,by
R902 T1797 T1795 arg1Of structure,local
R903 T1797 T1796 arg1Of structure,chromatin
R904 T1797 T1798 arg1Of structure,and
R905 T1798 T1794 arg2Of and,organizing
R906 T1798 T1804 arg1Of and,into
R907 T1803 T1798 arg2Of factors,and
R908 T1803 T1799 arg1Of factors,assembling
R909 T1803 T1800 arg1Of factors,other
R910 T1803 T1801 arg1Of factors,DNA-bound
R911 T1803 T1802 arg1Of factors,transcription
R912 T1806 T1805 arg1Of active,biologically
R913 T1806 T1807 arg1Of active,","
R914 T1809 T1807 arg2Of defined,","
R915 T1809 T1808 arg1Of defined,sterically
R916 T1811 T1804 arg2Of complexes,into
R917 T1811 T1806 arg1Of complexes,active
R918 T1811 T1809 arg1Of complexes,defined
R919 T1811 T1810 arg1Of complexes,multiprotein
R920 T1812 T1813 arg1Of Sox6,has
R921 T1812 T1814 arg1Of Sox6,been
R922 T1812 T1815 arg2Of Sox6,reported
R923 T1812 T1817 arg1Of Sox6,be
R924 T1812 T1818 arg1Of Sox6,able
R925 T1812 T1820 arg1Of Sox6,act
R926 T1815 T1813 arg2Of reported,has
R927 T1815 T1814 arg2Of reported,been
R928 T1817 T1815 arg3Of be,reported
R929 T1817 T1816 arg1Of be,to
R930 T1818 T1817 arg2Of able,be
R931 T1820 T1818 arg2Of act,able
R932 T1820 T1819 arg1Of act,to
R933 T1820 T1821 arg1Of act,as
R934 T1820 T1828 arg1Of act,","
R935 T1820 T1829 arg1Of act,depending
R936 T1824 T1823 arg1Of activator,an
R937 T1824 T1825 arg1Of activator,or
R938 T1825 T1821 arg2Of or,as
R939 T1825 T1822 arg1Of or,either
R940 T1827 T1825 arg2Of repressor,or
R941 T1827 T1826 arg1Of repressor,a
R942 T1830 T1829 arg2Of on,depending
R943 T1832 T1831 arg1Of interactors,its
R944 T1832 T1833 arg1Of interactors,and
R945 T1833 T1830 arg2Of and,on
R946 T1837 T1833 arg2Of context,and
R947 T1837 T1834 arg1Of context,its
R948 T1837 T1835 arg1Of context,target
R949 T1837 T1836 arg1Of context,promoter
R950 T1837 T1838 arg1Of context,[
R951 T1839 T1838 arg2Of "5,6",[
R952 T1840 T1838 arg3Of ],[
R953 T1843 T1844 arg1Of Sox6,has
R954 T1843 T1846 arg1Of Sox6,been
R955 T1843 T1847 arg2Of Sox6,shown
R956 T1843 T1849 arg1Of Sox6,act
R957 T1847 T1841 arg1Of shown,Intriguingly
R958 T1847 T1842 arg1Of shown,","
R959 T1847 T1844 arg2Of shown,has
R960 T1847 T1845 arg1Of shown,also
R961 T1847 T1846 arg2Of shown,been
R962 T1849 T1847 arg3Of act,shown
R963 T1849 T1848 arg1Of act,to
R964 T1849 T1850 arg1Of act,as
R965 T1854 T1850 arg2Of factor,as
R966 T1854 T1851 arg1Of factor,a
R967 T1854 T1852 arg1Of factor,general
R968 T1854 T1853 arg1Of factor,splicing
R969 T1854 T1855 arg1Of factor,that
R970 T1854 T1856 arg1Of factor,participates
R971 T1856 T1857 arg1Of participates,in
R972 T1859 T1857 arg2Of splicing,in
R973 T1859 T1858 arg1Of splicing,pre-mRNA
R974 T1859 T1860 arg1Of splicing,[
R975 T1861 T1860 arg2Of 7,[
R976 T1862 T1860 arg3Of ],[
R977 T1863 T1864 arg1Of Depletion,of
R978 T1863 T1866 arg1Of Depletion,in
R979 T1863 T1870 arg1Of Depletion,blocked
R980 T1865 T1864 arg2Of Sox6,of
R981 T1869 T1866 arg2Of extracts,in
R982 T1869 T1867 arg1Of extracts,HeLa
R983 T1869 T1868 arg1Of extracts,cell
R984 T1870 T1876 arg1Of blocked,and
R985 T1871 T1870 arg2Of splicing,blocked
R986 T1871 T1872 arg1Of splicing,of
R987 T1874 T1872 arg2Of substrates,of
R988 T1874 T1873 arg1Of substrates,multiple
R989 T1876 T1875 arg1Of and,","
R990 T1876 T1896 modOf and,indicating
R991 T1876 T1902 arg1Of and,[
R992 T1877 T1878 arg1Of expression,of
R993 T1877 T1893 arg1Of expression,restored
R994 T1881 T1878 arg2Of domain,of
R995 T1881 T1879 arg1Of domain,the
R996 T1881 T1880 arg1Of domain,HMG
R997 T1881 T1882 arg1Of domain,of
R998 T1881 T1890 arg1Of domain,in
R999 T1884 T1885 arg1Of Sox6,","
R1000 T1885 T1888 arg1Of ",",or
R1001 T1886 T1885 arg2Of Sox9,","
R1002 T1888 T1882 arg2Of or,of
R1003 T1888 T1883 arg1Of or,either
R1004 T1888 T1887 arg1Of or,","
R1005 T1889 T1888 arg2Of Sry,or
R1006 T1892 T1890 arg2Of extracts,in
R1007 T1892 T1891 arg1Of extracts,the
R1008 T1893 T1876 arg2Of restored,and
R1009 T1893 T1895 arg1Of restored,","
R1010 T1894 T1893 arg2Of splicing,restored
R1011 T1898 T1896 arg2Of overlap,indicating
R1012 T1898 T1897 arg1Of overlap,functional
R1013 T1898 T1899 arg1Of overlap,of
R1014 T1901 T1899 arg2Of proteins,of
R1015 T1901 T1900 arg1Of proteins,these
R1016 T1903 T1902 arg2Of 7,[
R1017 T1904 T1902 arg3Of ],[
R1018 T1905 T1906 arg1Of Regardless,of
R1019 T1907 T1906 arg2Of how,of
R1020 T1909 T1908 arg1Of functions,Sox6
R1021 T1909 T1910 arg1Of functions,in
R1022 T1909 T1911 arg1Of functions,regulating
R1023 T1911 T1907 arg1Of regulating,how
R1024 T1913 T1911 arg2Of expression,regulating
R1025 T1913 T1912 arg1Of expression,gene
R1026 T1916 T1915 arg1Of studies,previous
R1027 T1916 T1917 arg1Of studies,have
R1028 T1916 T1918 arg1Of studies,demonstrated
R1029 T1918 T1905 arg1Of demonstrated,Regardless
R1030 T1918 T1914 arg1Of demonstrated,","
R1031 T1918 T1917 arg2Of demonstrated,have
R1032 T1920 T1921 arg1Of Sox6,is
R1033 T1921 T1918 arg2Of is,demonstrated
R1034 T1921 T1919 arg1Of is,that
R1035 T1925 T1921 arg2Of molecule,is
R1036 T1925 T1922 arg1Of molecule,an
R1037 T1925 T1923 arg1Of molecule,important
R1038 T1925 T1924 arg1Of molecule,regulatory
R1039 T1925 T1926 arg1Of molecule,that
R1040 T1925 T1927 arg1Of molecule,plays
R1041 T1927 T1930 arg1Of plays,in
R1042 T1929 T1927 arg2Of role,plays
R1043 T1929 T1928 arg1Of role,a
R1044 T1932 T1933 arg1Of development,of
R1045 T1932 T1941 arg1Of development,","
R1046 T1937 T1933 arg2Of system,of
R1047 T1937 T1934 arg1Of system,the
R1048 T1937 T1935 arg1Of system,central
R1049 T1937 T1936 arg1Of system,nervous
R1050 T1937 T1938 arg1Of system,[
R1051 T1939 T1938 arg2Of 8–11,[
R1052 T1940 T1938 arg3Of ],[
R1053 T1941 T1947 arg1Of ",",and
R1054 T1942 T1941 arg2Of cartilage,","
R1055 T1942 T1943 arg1Of cartilage,[
R1056 T1944 T1943 arg2Of "6,12,13",[
R1057 T1945 T1943 arg3Of ],[
R1058 T1947 T1930 arg2Of and,in
R1059 T1947 T1931 arg1Of and,the
R1060 T1947 T1946 arg1Of and,","
R1061 T1948 T1947 arg2Of muscle,and
R1062 T1948 T1949 arg1Of muscle,[
R1063 T1950 T1949 arg2Of "14,15",[
R1064 T1951 T1949 arg3Of ],[
R1065 T1955 T1952 arg1Of mouse,A
R1066 T1955 T1953 arg1Of mouse,Sox6-null
R1067 T1955 T1954 arg1Of mouse,mutant
R1068 T1955 T1956 arg1Of mouse,(
R1069 T1955 T1959 arg1Of mouse,has
R1070 T1955 T1961 arg1Of mouse,been
R1071 T1955 T1962 arg2Of mouse,identified
R1072 T1957 T1956 arg2Of p100H,(
R1073 T1958 T1956 arg3Of ),(
R1074 T1962 T1959 arg2Of identified,has
R1075 T1962 T1960 arg1Of identified,previously
R1076 T1962 T1961 arg2Of identified,been
R1077 T1962 T1963 arg1Of identified,in
R1078 T1965 T1963 arg2Of laboratory,in
R1079 T1965 T1964 arg1Of laboratory,our
R1080 T1965 T1966 arg1Of laboratory,[
R1081 T1967 T1966 arg2Of 14,[
R1082 T1968 T1966 arg3Of ],[
R1083 T1969 T1970 arg1Of Mice,homozygous
R1084 T1969 T1973 arg1Of Mice,show
R1085 T1969 T1977 arg1Of Mice,develop
R1086 T1969 T1985 arg1Of Mice,die
R1087 T1970 T1971 arg1Of homozygous,for
R1088 T1972 T1971 arg2Of p100H,for
R1089 T1973 T1976 arg1Of show,","
R1090 T1975 T1973 arg2Of growth,show
R1091 T1975 T1974 arg2Of growth,delayed
R1092 T1976 T1984 arg1Of ",",and
R1093 T1977 T1976 arg2Of develop,","
R1094 T1978 T1979 arg1Of myopathy,and
R1095 T1980 T1979 arg2Of arterioventricular,and
R1096 T1982 T1977 arg2Of block,develop
R1097 T1982 T1978 arg1Of block,myopathy
R1098 T1982 T1980 arg1Of block,arterioventricular
R1099 T1982 T1981 arg1Of block,heart
R1100 T1984 T1983 arg1Of and,","
R1101 T1984 T1991 arg1Of and,[
R1102 T1985 T1984 arg2Of die,and
R1103 T1985 T1986 arg1Of die,within
R1104 T1985 T1989 arg1Of die,after
R1105 T1988 T1986 arg2Of wk,within
R1106 T1988 T1987 arg1Of wk,2
R1107 T1990 T1989 arg2Of birth,after
R1108 T1992 T1991 arg2Of 14,[
R1109 T1993 T1991 arg3Of ],[
R1110 T1997 T1994 arg1Of allele,The
R1111 T1997 T1995 arg1Of allele,p100H
R1112 T1997 T1996 arg1Of allele,mutant
R1113 T1997 T1998 arg1Of allele,is
R1114 T1997 T1999 arg2Of allele,associated
R1115 T1999 T1998 arg2Of associated,is
R1116 T1999 T2000 arg1Of associated,with
R1117 T2004 T2000 arg2Of inversion,with
R1118 T2004 T2001 arg1Of inversion,a
R1119 T2004 T2002 arg1Of inversion,Chromosome
R1120 T2004 T2003 arg1Of inversion,7
R1121 T2004 T2005 arg1Of inversion,that
R1122 T2004 T2006 arg1Of inversion,disrupts
R1123 T2006 T2028 arg1Of disrupts,[
R1124 T2010 T2008 arg1Of gene,the
R1125 T2010 T2009 arg1Of gene,p
R1126 T2010 T2011 arg1Of gene,and
R1127 T2011 T2006 arg2Of and,disrupts
R1128 T2011 T2007 arg1Of and,both
R1129 T2014 T2011 arg2Of gene,and
R1130 T2014 T2012 arg1Of gene,the
R1131 T2014 T2013 arg1Of gene,Sox6
R1132 T2014 T2015 arg1Of gene,(
R1133 T2019 T2015 arg2Of gene,(
R1134 T2019 T2016 arg1Of gene,and
R1135 T2019 T2017 arg1Of gene,no
R1136 T2019 T2018 arg1Of gene,other
R1137 T2019 T2020 arg1Of gene,within
R1138 T2022 T2020 arg2Of nucleotides,within
R1139 T2022 T2021 arg1Of nucleotides,"50,000"
R1140 T2022 T2023 arg1Of nucleotides,of
R1141 T2026 T2023 arg2Of breakpoints,of
R1142 T2026 T2024 arg1Of breakpoints,the
R1143 T2026 T2025 arg1Of breakpoints,chromosomal
R1144 T2027 T2015 arg3Of ),(
R1145 T2029 T2028 arg2Of 14,[
R1146 T2030 T2028 arg3Of ],[
R1147 T2034 T2032 arg1Of gene,the
R1148 T2034 T2033 arg1Of gene,p
R1149 T2034 T2035 arg1Of gene,functions
R1150 T2035 T2031 arg2Of functions,Because
R1151 T2035 T2036 arg1Of functions,solely
R1152 T2035 T2037 arg1Of functions,in
R1153 T2038 T2037 arg2Of pigmentation,in
R1154 T2038 T2039 arg1Of pigmentation,[
R1155 T2040 T2039 arg2Of 16,[
R1156 T2041 T2039 arg3Of ],[
R1157 T2046 T2043 arg1Of factor,the
R1158 T2046 T2044 arg1Of factor,Sox6
R1159 T2046 T2045 arg1Of factor,transcription
R1160 T2046 T2047 arg1Of factor,is
R1161 T2046 T2048 arg2Of factor,implicated
R1162 T2048 T2031 arg1Of implicated,Because
R1163 T2048 T2042 arg1Of implicated,","
R1164 T2048 T2047 arg2Of implicated,is
R1165 T2048 T2049 arg1Of implicated,in
R1166 T2052 T2049 arg2Of phenotypes,in
R1167 T2052 T2050 arg1Of phenotypes,all
R1168 T2052 T2051 arg1Of phenotypes,other
R803 T1699 T1696 arg1Of box,Sry
R804 T1699 T1697 arg1Of box,type
R805 T1699 T1698 arg1Of box,HMG
R806 T1699 T1700 arg1Of box,(
R807 T1699 T1703 arg1Of box,is
R808 T1701 T1700 arg2Of Sox6,(
R809 T1702 T1700 arg3Of ),(
R810 T1705 T1703 arg2Of member,is

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T1429 1926-1930 Protein denotes Sox6
T1428 1876-1877 Protein denotes p
T1427 1771-1775 Protein denotes Sox6
T1426 1756-1757 Protein denotes p
T1425 1441-1445 Protein denotes Sox6
T1424 1282-1286 Protein denotes Sox6
T1423 1196-1200 Protein denotes Sox6
T1422 1086-1089 Protein denotes Sry
T1421 1077-1081 Protein denotes Sox9
T1420 1071-1075 Protein denotes Sox6
T1419 960-964 Protein denotes Sox6
T1418 842-846 Protein denotes Sox6
T1417 680-684 Protein denotes Sox6
T1416 18-22 Protein denotes Sox6
T1415 0-3 Protein denotes Sry

UBERON-AE

Id Subject Object Predicate Lexical cue
T1199 1614-1619 http://purl.obolibrary.org/obo/UBERON_0000948 denotes heart
T1198 1375-1389 http://purl.obolibrary.org/obo/UBERON_0001016 denotes nervous system
T1197 1367-1389 http://purl.obolibrary.org/obo/UBERON_0001017 denotes central nervous system
T1196 1367-1374 http://purl.obolibrary.org/obo/UBERON_0012131 denotes central

GO-BP

Id Subject Object Predicate Lexical cue
T1263 1903-1915 http://purl.obolibrary.org/obo/GO_0043473 denotes pigmentation
T1262 1566-1572 http://purl.obolibrary.org/obo/GO_0040007 denotes growth
T1260 1348-1389 http://purl.obolibrary.org/obo/GO_0021954 denotes development of the central nervous system
T1258 1348-1389 http://purl.obolibrary.org/obo/GO_0007417 denotes development of the central nervous system
T1255 1348-1359 http://purl.obolibrary.org/obo/GO_0032502 denotes development
T1253 1225-1240 http://purl.obolibrary.org/obo/GO_0010467 denotes gene expression
T1252 928-941 http://purl.obolibrary.org/obo/GO_0000394 denotes mRNA splicing
T1251 928-941 http://purl.obolibrary.org/obo/GO_0000374 denotes mRNA splicing
T1250 928-941 http://purl.obolibrary.org/obo/GO_0000373 denotes mRNA splicing
T1249 928-941 http://purl.obolibrary.org/obo/GO_0000372 denotes mRNA splicing
T1248 928-941 http://purl.obolibrary.org/obo/GO_0000398 denotes mRNA splicing
T1247 924-941 http://purl.obolibrary.org/obo/GO_0048024 denotes pre-mRNA splicing
T1246 1115-1123 http://purl.obolibrary.org/obo/GO_0045292 denotes splicing
T1245 995-1003 http://purl.obolibrary.org/obo/GO_0045292 denotes splicing
T1244 933-941 http://purl.obolibrary.org/obo/GO_0045292 denotes splicing
T1243 887-895 http://purl.obolibrary.org/obo/GO_0045292 denotes splicing
T1239 1931-1944 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T1238 589-602 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T1237 375-388 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T1236 218-231 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T1235 47-60 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription

GO-MF

Id Subject Object Predicate Lexical cue
T1469 201-208 http://purl.obolibrary.org/obo/GO_0005488 denotes binding

GO-CC

Id Subject Object Predicate Lexical cue
T1494 1710-1720 http://purl.obolibrary.org/obo/GO_0005694 denotes Chromosome
T1491 973-977 http://purl.obolibrary.org/obo/GO_0005623 denotes cell
T1489 538-547 http://purl.obolibrary.org/obo/GO_0000785 denotes chromatin
T1487 414-420 http://purl.obolibrary.org/obo/GO_0097610 denotes groove
T1486 258-264 http://purl.obolibrary.org/obo/GO_0097610 denotes groove

sentences

Id Subject Object Predicate Lexical cue
T1210 1864-1990 Sentence denotes Because the p gene functions solely in pigmentation [16], the Sox6 transcription factor is implicated in all other phenotypes.
T1209 1665-1863 Sentence denotes The p100H mutant allele is associated with a Chromosome 7 inversion that disrupts both the p gene and the Sox6 gene (and no other gene within 50,000 nucleotides of the chromosomal breakpoints) [14].
T1208 1527-1664 Sentence denotes Mice homozygous for p100H show delayed growth, develop myopathy and arterioventricular heart block, and die within 2 wk after birth [14].
T1207 1439-1526 Sentence denotes A Sox6-null mutant mouse (p100H) has previously been identified in our laboratory [14].
T1206 1178-1438 Sentence denotes Regardless of how Sox6 functions in regulating gene expression, previous studies have demonstrated that Sox6 is an important regulatory molecule that plays a role in the development of the central nervous system [8–11], cartilage [6,12,13], and muscle [14,15].
T1205 947-1177 Sentence denotes Depletion of Sox6 in HeLa cell extracts blocked splicing of multiple substrates, and expression of the HMG domain of either Sox6, Sox9, or Sry in the extracts restored splicing, indicating functional overlap of these proteins [7].
T1204 828-946 Sentence denotes Intriguingly, Sox6 has also been shown to act as a general splicing factor that participates in pre-mRNA splicing [7].
T1203 680-827 Sentence denotes Sox6 has been reported to be able to act as either an activator or a repressor, depending on its interactors and its target promoter context [5,6].
T1202 433-679 Sentence denotes Therefore, Sox proteins may perform part of their function as architectural proteins by organizing local chromatin structure and assembling other DNA-bound transcription factors into biologically active, sterically defined multiprotein complexes.
T1201 214-432 Sentence denotes Sox transcription factors bind to the minor groove of DNA and cause a 70°–85° bend of the DNA that leads to local conformational changes [2,3], while most other transcription factors target the major groove of DNA [4].
T1200 0-213 Sentence denotes Sry type HMG box (Sox6) is a member of the Sox transcription factor family characterized by the conserved high mobility group (HMG) domain, consisting of 79 amino acids involved in DNA recognition and binding [1].
T20 0-213 Sentence denotes Sry type HMG box (Sox6) is a member of the Sox transcription factor family characterized by the conserved high mobility group (HMG) domain, consisting of 79 amino acids involved in DNA recognition and binding [1].
T21 214-432 Sentence denotes Sox transcription factors bind to the minor groove of DNA and cause a 70°–85° bend of the DNA that leads to local conformational changes [2,3], while most other transcription factors target the major groove of DNA [4].
T22 433-679 Sentence denotes Therefore, Sox proteins may perform part of their function as architectural proteins by organizing local chromatin structure and assembling other DNA-bound transcription factors into biologically active, sterically defined multiprotein complexes.
T23 680-827 Sentence denotes Sox6 has been reported to be able to act as either an activator or a repressor, depending on its interactors and its target promoter context [5,6].
T24 828-946 Sentence denotes Intriguingly, Sox6 has also been shown to act as a general splicing factor that participates in pre-mRNA splicing [7].
T25 947-1177 Sentence denotes Depletion of Sox6 in HeLa cell extracts blocked splicing of multiple substrates, and expression of the HMG domain of either Sox6, Sox9, or Sry in the extracts restored splicing, indicating functional overlap of these proteins [7].
T26 1178-1438 Sentence denotes Regardless of how Sox6 functions in regulating gene expression, previous studies have demonstrated that Sox6 is an important regulatory molecule that plays a role in the development of the central nervous system [8–11], cartilage [6,12,13], and muscle [14,15].
T27 1439-1526 Sentence denotes A Sox6-null mutant mouse (p100H) has previously been identified in our laboratory [14].
T28 1527-1664 Sentence denotes Mice homozygous for p100H show delayed growth, develop myopathy and arterioventricular heart block, and die within 2 wk after birth [14].
T29 1665-1863 Sentence denotes The p100H mutant allele is associated with a Chromosome 7 inversion that disrupts both the p gene and the Sox6 gene (and no other gene within 50,000 nucleotides of the chromosomal breakpoints) [14].
T30 1864-1990 Sentence denotes Because the p gene functions solely in pigmentation [16], the Sox6 transcription factor is implicated in all other phenotypes.

ICD10

Id Subject Object Predicate Lexical cue
T1485 1582-1590 http://purl.bioontology.org/ontology/ICD10/G72.9 denotes myopathy
T1483 1375-1382 http://purl.bioontology.org/ontology/ICD10/R45.0 denotes nervous

simple1

Id Subject Object Predicate Lexical cue
T1656 1926-1930 Protein denotes Sox6
T1655 1876-1877 Protein denotes p
T1654 1771-1775 Protein denotes Sox6
T1653 1756-1757 Protein denotes p
T1652 1441-1445 Protein denotes Sox6
T1651 1282-1286 Protein denotes Sox6
T1650 1196-1200 Protein denotes Sox6
T1649 1086-1089 Protein denotes Sry
T1648 1077-1081 Protein denotes Sox9
T1647 1071-1075 Protein denotes Sox6
T1646 960-964 Protein denotes Sox6
T1645 842-846 Protein denotes Sox6
T1644 680-684 Protein denotes Sox6
T1643 18-22 Protein denotes Sox6
T1642 0-3 Protein denotes Sry

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T4277 1738-1746 Negative_regulation denotes disrupts
T4276 1032-1042 Gene_expression denotes expression
T4275 1106-1114 Positive_regulation denotes restored
T4274 947-956 Negative_regulation denotes Depletion
T4234 1926-1930 Protein denotes Sox6
T4233 1876-1877 Protein denotes p
T4232 1771-1775 Protein denotes Sox6
T4231 1756-1757 Protein denotes p
T4230 1441-1445 Protein denotes Sox6
T4229 1196-1200 Protein denotes Sox6
T4228 1282-1286 Protein denotes Sox6
T4227 1086-1089 Protein denotes Sry
T4226 1077-1081 Protein denotes Sox9
T4225 1071-1075 Protein denotes Sox6
T4224 960-964 Protein denotes Sox6
T4223 842-846 Protein denotes Sox6
T4222 680-684 Protein denotes Sox6
T4221 18-22 Protein denotes Sox6
T4220 0-3 Protein denotes Sry
R3021 T4224 T4274 themeOf Sox6,Depletion
R3025 T4225 T4276 themeOf Sox6,expression
R3026 T4226 T4276 themeOf Sox9,expression
R3027 T4227 T4276 themeOf Sry,expression
R3029 T4231 T4277 themeOf p,disrupts
R3030 T4232 T4277 themeOf Sox6,disrupts
R3059 T4276 T4275 themeOf expression,restored
R3060 T4276 T4275 themeOf expression,restored
R3061 T4276 T4275 themeOf expression,restored

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T2741 1738-1746 Negative_regulation denotes disrupts
T2740 947-956 Negative_regulation denotes Depletion
T2739 1106-1114 Positive_regulation denotes restored
T2738 1032-1042 Gene_expression denotes expression
T2698 1926-1930 Protein denotes Sox6
T2697 1876-1877 Protein denotes p
T2696 1771-1775 Protein denotes Sox6
T2695 1756-1757 Protein denotes p
T2694 1441-1445 Protein denotes Sox6
T2693 1196-1200 Protein denotes Sox6
T2692 1282-1286 Protein denotes Sox6
T2691 1086-1089 Protein denotes Sry
T2690 1077-1081 Protein denotes Sox9
T2689 1071-1075 Protein denotes Sox6
T2688 960-964 Protein denotes Sox6
T2687 842-846 Protein denotes Sox6
T2686 680-684 Protein denotes Sox6
T2685 18-22 Protein denotes Sox6
T2684 0-3 Protein denotes Sry
R1774 T2688 T2740 themeOf Sox6,Depletion
R1775 T2689 T2738 themeOf Sox6,expression
R1780 T2690 T2738 themeOf Sox9,expression
R1782 T2691 T2738 themeOf Sry,expression
R1786 T2696 T2741 themeOf Sox6,disrupts
R1849 T2738 T2739 themeOf expression,restored
R1851 T2738 T2739 themeOf expression,restored
R1852 T2738 T2739 themeOf expression,restored

DLUT931

Id Subject Object Predicate Lexical cue
T2820 1931-1944 Transcription denotes transcription
T2819 1738-1746 Negative_regulation denotes disrupts
T2818 1032-1042 Gene_expression denotes expression
T2817 947-956 Negative_regulation denotes Depletion
T2816 201-208 Binding denotes binding
T2776 1926-1930 Protein denotes Sox6
T2775 1876-1877 Protein denotes p
T2774 1771-1775 Protein denotes Sox6
T2773 1756-1757 Protein denotes p
T2772 1441-1445 Protein denotes Sox6
T2771 1196-1200 Protein denotes Sox6
T2770 1282-1286 Protein denotes Sox6
T2769 1086-1089 Protein denotes Sry
T2768 1077-1081 Protein denotes Sox9
T2767 1071-1075 Protein denotes Sox6
T2766 960-964 Protein denotes Sox6
T2765 842-846 Protein denotes Sox6
T2764 680-684 Protein denotes Sox6
T2763 18-22 Protein denotes Sox6
T2762 0-3 Protein denotes Sry
R1850 T2768 T2818 themeOf Sox9,expression
R1853 T2769 T2818 themeOf Sry,expression
R1855 T2774 T2819 themeOf Sox6,disrupts
R1840 T2762 T2816 themeOf Sry,binding
R1844 T2763 T2816 themeOf Sox6,binding
R1846 T2766 T2817 themeOf Sox6,Depletion
R1848 T2767 T2818 themeOf Sox6,expression
R1854 T2773 T2819 themeOf p,disrupts
R1856 T2776 T2820 themeOf Sox6,transcription

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T4119 0-3 Protein denotes Sry
T4117 1043-1060 Entity denotes of the HMG domain
T4115 1077-1081 Protein denotes Sox9
T4114 495-517 Protein denotes architectural proteins
T4112 154-177 Entity denotes 79 amino acids involved
T4104 1527-1573 Protein denotes Mice homozygous for p100H show delayed growth,
T4103 268-271 Entity denotes DNA
T4102 1282-1286 Protein denotes Sox6
T4100 1872-1882 Protein denotes the p gene
T4098 181-184 Entity denotes DNA
T4088 1086-1089 Protein denotes Sry
T4086 656-668 Protein denotes multiprotein
T4084 1196-1200 Protein denotes Sox6
T4083 1876-1877 Protein denotes p
T4080 579-588 Entity denotes DNA-bound
T4079 444-456 Protein denotes Sox proteins
T4070 39-74 Protein denotes the Sox transcription factor family
T4066 1155-1176 Protein denotes of these proteins [7]
T4065 1093-1105 Entity denotes the extracts
T4064 1703-1720 Entity denotes with a Chromosome
T4063 1290-1397 Entity denotes an important regulatory molecule that plays a role in the development of the central nervous system [8–11],
T4061 669-678 Entity denotes complexes
T4060 214-217 Protein denotes Sox
T4059 424-427 Entity denotes DNA
T4055 1004-1026 Entity denotes of multiple substrates
T4045 1752-1762 Protein denotes the p gene
T4043 1786-1856 Protein denotes no other gene within 50,000 nucleotides of the chromosomal breakpoints
T4041 793-826 Entity denotes its target promoter context [5,6]
T4040 1547-1573 Entity denotes p100H show delayed growth,
T4038 444-447 Protein denotes Sox
T4034 43-46 Protein denotes Sox
T4032 1665-1688 Protein denotes The p100H mutant allele
T4031 731-743 Entity denotes an activator
T4219 1086-1123 Binding denotes Sry in the extracts restored splicing
T4213 573-610 Binding denotes other DNA-bound transcription factors
T4212 1665-1722 Binding denotes The p100H mutant allele is associated with a Chromosome 7
T4211 1214-1241 Regulation denotes regulating gene expression,
T4209 214-271 Binding denotes Sox transcription factors bind to the minor groove of DNA
T4202 521-610 Binding denotes organizing local chromatin structure and assembling other DNA-bound transcription factors
T4196 1922-1951 Transcription denotes the Sox6 transcription factor
T4191 404-431 Entity denotes the major groove of DNA [4]
T4187 957-964 Protein denotes of Sox6
T4184 245-271 Entity denotes to the minor groove of DNA
T4176 968-986 Entity denotes HeLa cell extracts
T4175 573-610 Protein denotes other DNA-bound transcription factors
T4147 18-22 Protein denotes Sox6
T4144 214-239 Protein denotes Sox transcription factors
T4139 1771-1775 Protein denotes Sox6
T4137 157-162 Entity denotes amino
T4133 1926-1930 Protein denotes Sox6
T4130 132-139 Entity denotes domain,
T4127 1756-1757 Protein denotes p
T4123 1465-1470 Entity denotes p100H
T4160 1071-1082 Protein denotes Sox6, Sox9,
T4157 842-846 Protein denotes Sox6
T4150 1767-1857 Protein denotes the Sox6 gene (and no other gene within 50,000 nucleotides of the chromosomal breakpoints)
T4173 538-547 Entity denotes chromatin
T4172 297-307 Entity denotes of the DNA
T4171 0-23 Entity denotes Sry type HMG box (Sox6)
T4168 1807-1856 Entity denotes 50,000 nucleotides of the chromosomal breakpoints
T4166 680-684 Protein denotes Sox6
R2959 T4032 T4212 themeOf The p100H mutant allele,The p100H mutant allele is associated with a Chromosome 7
R2997 T4064 T4212 themeOf with a Chromosome,The p100H mutant allele is associated with a Chromosome 7
R3008 T4080 T4213 themeOf DNA-bound,other DNA-bound transcription factors
R3011 T4133 T4196 themeOf Sox6,the Sox6 transcription factor
R3013 T4088 T4219 themeOf Sry,Sry in the extracts restored splicing
R3015 T4144 T4209 themeOf Sox transcription factors,Sox transcription factors bind to the minor groove of DNA
R3023 T4175 T4213 themeOf other DNA-bound transcription factors,other DNA-bound transcription factors
R3024 T4184 T4209 themeOf to the minor groove of DNA,Sox transcription factors bind to the minor groove of DNA

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T3284 1989-1990 . denotes .
T3247 1786-1788 DT denotes no
T3246 1782-1785 CC denotes and
T3245 1781-1782 -LRB- denotes (
T3244 1776-1780 NN denotes gene
T3243 1771-1775 NNP denotes Sox6
T3242 1767-1770 DT denotes the
T3241 1763-1766 CC denotes and
T3240 1758-1762 NN denotes gene
T3239 1756-1757 NN denotes p
T3238 1752-1755 DT denotes the
T3237 1747-1751 CC denotes both
T3236 1738-1746 VBZ denotes disrupts
T3235 1733-1737 WDT denotes that
T3234 1723-1732 NN denotes inversion
T3233 1721-1722 CD denotes 7
T3232 1710-1720 NN denotes Chromosome
T3231 1708-1709 DT denotes a
T3230 1703-1707 IN denotes with
T3229 1692-1702 VBN denotes associated
T3228 1689-1691 VBZ denotes is
T3227 1682-1688 NN denotes allele
T3226 1675-1681 JJ denotes mutant
T3225 1669-1674 JJ denotes p100H
T3224 1665-1668 DT denotes The
T3223 1663-1664 . denotes .
T3222 1662-1663 NNP denotes ]
T3221 1660-1662 CD denotes 14
T3220 1659-1660 NNP denotes [
T3219 1653-1658 NN denotes birth
T3218 1647-1652 IN denotes after
T3217 1644-1646 NN denotes wk
T3216 1642-1643 CD denotes 2
T3215 1635-1641 IN denotes within
T3214 1631-1634 VB denotes die
T3213 1627-1630 CC denotes and
T3212 1625-1626 , denotes ,
T3211 1620-1625 NN denotes block
T3210 1614-1619 NN denotes heart
T3209 1595-1613 JJ denotes arterioventricular
T3208 1591-1594 CC denotes and
T3207 1582-1590 NN denotes myopathy
T3206 1574-1581 VB denotes develop
T3205 1572-1573 , denotes ,
T3204 1566-1572 NN denotes growth
T3203 1558-1565 VBN denotes delayed
T3202 1553-1557 NN denotes show
T3201 1547-1552 JJ denotes p100H
T3200 1543-1546 IN denotes for
T3199 1532-1542 NNS denotes homozygous
T3198 1527-1531 NN denotes Mice
T3197 1525-1526 . denotes .
T3196 1524-1525 NNP denotes ]
T3195 1522-1524 CD denotes 14
T3194 1521-1522 NNP denotes [
T3193 1510-1520 NN denotes laboratory
T3192 1506-1509 PRP$ denotes our
T3191 1503-1505 IN denotes in
T3190 1492-1502 VBN denotes identified
T3189 1487-1491 VBN denotes been
T3188 1476-1486 RB denotes previously
T3187 1472-1475 VBZ denotes has
T3186 1470-1471 -RRB- denotes )
T3185 1465-1470 JJ denotes p100H
T3184 1464-1465 -LRB- denotes (
T3183 1458-1463 NN denotes mouse
T3182 1451-1457 JJ denotes mutant
T3181 1441-1450 JJ denotes Sox6-null
T3180 1439-1440 DT denotes A
T3179 1437-1438 . denotes .
T3178 1436-1437 NNP denotes ]
T3177 1431-1436 CD denotes 14,15
T3176 1430-1431 NNP denotes [
T3175 1423-1429 NN denotes muscle
T3174 1419-1422 CC denotes and
T3173 1417-1418 , denotes ,
T3172 1416-1417 NNP denotes ]
T3171 1409-1416 CD denotes 6,12,13
T3170 1408-1409 NNP denotes [
T3169 1398-1407 NN denotes cartilage
T3168 1396-1397 , denotes ,
T3167 1395-1396 NNP denotes ]
T3166 1393-1395 CD denotes 11
T3165 1391-1392 CD denotes 8
T3164 1390-1391 NN denotes [
T3163 1383-1389 NN denotes system
T3162 1375-1382 JJ denotes nervous
T3161 1367-1374 JJ denotes central
T3160 1363-1366 DT denotes the
T3159 1360-1362 IN denotes of
T3158 1348-1359 NN denotes development
T3157 1344-1347 DT denotes the
T3156 1341-1343 IN denotes in
T3155 1336-1340 NN denotes role
T3154 1334-1335 DT denotes a
T3153 1328-1333 VBZ denotes plays
T3152 1323-1327 WDT denotes that
T3151 1314-1322 NN denotes molecule
T3150 1303-1313 JJ denotes regulatory
T3149 1293-1302 JJ denotes important
T3148 1290-1292 DT denotes an
T3147 1287-1289 VBZ denotes is
T3146 1282-1286 NNP denotes Sox6
T3145 1277-1281 IN denotes that
T3144 1264-1276 VBN denotes demonstrated
T3143 1259-1263 VBP denotes have
T3142 1251-1258 NNS denotes studies
T3141 1242-1250 JJ denotes previous
T3140 1240-1241 , denotes ,
T3139 1230-1240 NN denotes expression
T3138 1225-1229 NN denotes gene
T3137 1214-1224 VBG denotes regulating
T3136 1211-1213 IN denotes in
T3135 1201-1210 NNS denotes functions
T3134 1196-1200 JJ denotes Sox6
T3133 1192-1195 WRB denotes how
T3132 1189-1191 IN denotes of
T3131 1178-1188 RB denotes Regardless
T3130 1176-1177 . denotes .
T3129 1175-1176 NNP denotes ]
T3128 1174-1175 CD denotes 7
T3127 1173-1174 VBP denotes [
T3126 1164-1172 NNS denotes proteins
T3125 1158-1163 DT denotes these
T3124 1155-1157 IN denotes of
T3123 1147-1154 VBP denotes overlap
T3122 1136-1146 JJ denotes functional
T3121 1125-1135 VBG denotes indicating
T3120 1123-1124 , denotes ,
T3119 1115-1123 NN denotes splicing
T3118 1106-1114 VBD denotes restored
T3117 1097-1105 NNS denotes extracts
T3116 1093-1096 DT denotes the
T3115 1090-1092 IN denotes in
T3114 1086-1089 NNP denotes Sry
T3113 1083-1085 CC denotes or
T3112 1081-1082 , denotes ,
T3111 1077-1081 NNP denotes Sox9
T3110 1075-1076 , denotes ,
T3109 1071-1075 NNP denotes Sox6
T3108 1064-1070 DT denotes either
T3107 1061-1063 IN denotes of
T3106 1054-1060 NN denotes domain
T3105 1050-1053 NNP denotes HMG
T3104 1046-1049 DT denotes the
T3103 1043-1045 IN denotes of
T3102 1032-1042 NN denotes expression
T3101 1028-1031 CC denotes and
T3100 1026-1027 , denotes ,
T3099 1016-1026 NNS denotes substrates
T3098 1007-1015 JJ denotes multiple
T3097 1004-1006 IN denotes of
T3096 995-1003 NN denotes splicing
T3095 987-994 VBN denotes blocked
T3094 978-986 VBZ denotes extracts
T3093 973-977 NN denotes cell
T3092 968-972 NNP denotes HeLa
T3091 965-967 IN denotes in
T3090 960-964 NNP denotes Sox6
T3089 957-959 IN denotes of
T3088 947-956 NN denotes Depletion
T3087 945-946 . denotes .
T3086 944-945 NNP denotes ]
T3085 943-944 CD denotes 7
T3084 942-943 NN denotes [
T3083 933-941 NN denotes splicing
T3082 924-932 JJ denotes pre-mRNA
T3081 921-923 IN denotes in
T3080 908-920 VBZ denotes participates
T3079 903-907 WDT denotes that
T3078 896-902 NN denotes factor
T3077 887-895 NN denotes splicing
T3076 879-886 JJ denotes general
T3075 877-878 DT denotes a
T3074 874-876 IN denotes as
T3073 870-873 VB denotes act
T3072 867-869 TO denotes to
T3071 861-866 VBN denotes shown
T3070 856-860 VBN denotes been
T3069 851-855 RB denotes also
T3068 847-850 VBZ denotes has
T3067 842-846 NNP denotes Sox6
T3066 840-841 , denotes ,
T3065 828-840 RB denotes Intriguingly
T3064 826-827 . denotes .
T3063 825-826 NNP denotes ]
T3062 822-825 CD denotes 5,6
T3061 821-822 NNP denotes [
T3060 813-820 NN denotes context
T3059 804-812 NN denotes promoter
T3058 797-803 NN denotes target
T3057 793-796 PRP$ denotes its
T3056 789-792 CC denotes and
T3055 777-788 NNS denotes interactors
T3054 773-776 PRP$ denotes its
T3053 770-772 IN denotes on
T3052 760-769 VBG denotes depending
T3051 758-759 , denotes ,
T3050 749-758 NN denotes repressor
T3049 747-748 DT denotes a
T3048 744-746 CC denotes or
T3047 734-743 NN denotes activator
T3046 731-733 DT denotes an
T3045 724-730 DT denotes either
T3044 721-723 IN denotes as
T3043 717-720 VB denotes act
T3042 714-716 TO denotes to
T3041 709-713 JJ denotes able
T3040 706-708 VB denotes be
T3039 703-705 TO denotes to
T3038 694-702 VBN denotes reported
T3037 689-693 VBN denotes been
T3036 685-688 VBZ denotes has
T3035 680-684 NNP denotes Sox6
T3034 678-679 . denotes .
T3033 669-678 NNS denotes complexes
T3032 656-668 NN denotes multiprotein
T2967 276-281 VB denotes cause
T2966 272-275 CC denotes and
T2965 268-271 NNP denotes DNA
T2964 265-267 IN denotes of
T2963 258-264 NN denotes groove
T2962 252-257 JJ denotes minor
T2961 248-251 DT denotes the
T2960 245-247 TO denotes to
T2959 240-244 NN denotes bind
T2958 232-239 NNS denotes factors
T2957 218-231 NN denotes transcription
T2956 214-217 NNP denotes Sox
T2955 212-213 . denotes .
T2954 211-212 NNP denotes ]
T2953 210-211 CD denotes 1
T2952 209-210 NN denotes [
T2951 201-208 JJ denotes binding
T2950 197-200 CC denotes and
T2949 185-196 NN denotes recognition
T2948 181-184 NNP denotes DNA
T2947 178-180 IN denotes in
T2946 169-177 VBN denotes involved
T2945 163-168 NNS denotes acids
T2944 157-162 JJ denotes amino
T2943 154-156 CD denotes 79
T2942 151-153 IN denotes of
T2941 140-150 VBG denotes consisting
T2940 138-139 , denotes ,
T2939 132-138 NN denotes domain
T2938 130-131 -RRB- denotes )
T2937 127-130 NNP denotes HMG
T2936 126-127 -LRB- denotes (
T2935 120-125 NN denotes group
T2934 111-119 NN denotes mobility
T2933 106-110 JJ denotes high
T2932 96-105 JJ denotes conserved
T2931 92-95 DT denotes the
T2930 89-91 IN denotes by
T2929 75-88 VBN denotes characterized
T2928 68-74 NN denotes family
T2927 61-67 NN denotes factor
T2926 47-60 NN denotes transcription
T3283 1979-1989 NNS denotes phenotypes
T3282 1973-1978 JJ denotes other
T3281 1969-1972 DT denotes all
T3280 1966-1968 IN denotes in
T3279 1955-1965 VBN denotes implicated
T3278 1952-1954 VBZ denotes is
T3277 1945-1951 NN denotes factor
T3276 1931-1944 NN denotes transcription
T3275 1926-1930 NNP denotes Sox6
T3274 1922-1925 DT denotes the
T3273 1920-1921 , denotes ,
T3272 1919-1920 NNP denotes ]
T3271 1917-1919 CD denotes 16
T3270 1916-1917 NNP denotes [
T3269 1903-1915 NN denotes pigmentation
T3268 1900-1902 IN denotes in
T3267 1893-1899 RB denotes solely
T3266 1883-1892 NNS denotes functions
T3265 1878-1882 NN denotes gene
T3264 1876-1877 NN denotes p
T3263 1872-1875 DT denotes the
T3262 1864-1871 IN denotes Because
T3261 1862-1863 . denotes .
T3260 1861-1862 NNP denotes ]
T3259 1859-1861 CD denotes 14
T3258 1858-1859 NNP denotes [
T3257 1856-1857 -RRB- denotes )
T3256 1845-1856 NNS denotes breakpoints
T3255 1833-1844 JJ denotes chromosomal
T3254 1829-1832 DT denotes the
T3253 1826-1828 IN denotes of
T3252 1814-1825 NNS denotes nucleotides
T3251 1807-1813 CD denotes 50,000
T3250 1800-1806 IN denotes within
T3249 1795-1799 NN denotes gene
T3248 1789-1794 JJ denotes other
T3031 648-655 VBN denotes defined
T3030 637-647 RB denotes sterically
T3029 635-636 , denotes ,
T3028 629-635 JJ denotes active
T3027 616-628 RB denotes biologically
T3026 611-615 IN denotes into
T3025 603-610 NNS denotes factors
T3024 589-602 NN denotes transcription
T3023 579-588 JJ denotes DNA-bound
T3022 573-578 JJ denotes other
T3021 562-572 VBG denotes assembling
T3020 558-561 CC denotes and
T3019 548-557 NN denotes structure
T3018 538-547 NN denotes chromatin
T3017 532-537 JJ denotes local
T3016 521-531 VBG denotes organizing
T3015 518-520 IN denotes by
T3014 509-517 NNS denotes proteins
T3013 495-508 JJ denotes architectural
T3012 492-494 IN denotes as
T3011 483-491 NN denotes function
T3010 477-482 PRP$ denotes their
T3009 474-476 IN denotes of
T3008 469-473 NN denotes part
T3007 461-468 VB denotes perform
T3006 457-460 MD denotes may
T3005 448-456 NNS denotes proteins
T3004 444-447 NNP denotes Sox
T3003 442-443 , denotes ,
T3002 433-442 RB denotes Therefore
T3001 431-432 . denotes .
T3000 430-431 NNP denotes ]
T2999 429-430 CD denotes 4
T2998 428-429 NNP denotes [
T2997 424-427 NNP denotes DNA
T2996 421-423 IN denotes of
T2995 414-420 NN denotes groove
T2994 408-413 JJ denotes major
T2993 404-407 DT denotes the
T2992 397-403 VBP denotes target
T2991 389-396 NNS denotes factors
T2990 375-388 NN denotes transcription
T2989 369-374 JJ denotes other
T2988 364-368 RBS denotes most
T2987 358-363 IN denotes while
T2986 356-357 , denotes ,
T2985 355-356 NNP denotes ]
T2984 352-355 CD denotes 2,3
T2983 351-352 NNP denotes [
T2982 343-350 NNS denotes changes
T2981 328-342 JJ denotes conformational
T2980 322-327 JJ denotes local
T2979 319-321 TO denotes to
T2978 313-318 VBZ denotes leads
T2977 308-312 WDT denotes that
T2976 304-307 NN denotes DNA
T2975 300-303 DT denotes the
T2974 297-299 IN denotes of
T2973 292-296 VB denotes bend
T2972 290-291 NN denotes °
T2971 288-290 CD denotes 85
T2970 286-287 NN denotes °
T2969 284-286 CD denotes 70
T2968 282-283 DT denotes a
T2925 43-46 NNPS denotes Sox
T2924 39-42 DT denotes the
T2923 36-38 IN denotes of
T2922 29-35 NN denotes member
T2921 27-28 DT denotes a
T2920 24-26 VBZ denotes is
T2919 22-23 -RRB- denotes )
T2918 18-22 NNP denotes Sox6
T2917 17-18 -LRB- denotes (
T2916 13-16 NN denotes box
T2915 9-12 NNP denotes HMG
T2914 4-8 NN denotes type
T2913 0-3 NNP denotes Sry
R1907 T2913 T2916 compound Sry,box
R1909 T2914 T2916 compound type,box
R1914 T2915 T2916 compound HMG,box
R1918 T2916 T2920 nsubj box,is
R1921 T2917 T2918 punct (,Sox6
R1922 T2918 T2916 appos Sox6,box
R1923 T2919 T2916 punct ),box
R1924 T2920 T2920 ROOT is,is
R1925 T2921 T2922 det a,member
R1926 T2922 T2920 attr member,is
R1927 T2926 T2927 compound transcription,factor
R1928 T2923 T2922 prep of,member
R1929 T2927 T2928 compound factor,family
R1930 T2928 T2923 pobj family,of
R1931 T2929 T2922 acl characterized,member
R1932 T2924 T2928 det the,family
R1933 T2930 T2929 agent by,characterized
R1934 T2931 T2935 det the,group
R1935 T2925 T2928 compound Sox,family
R1936 T2932 T2935 amod conserved,group
R1937 T2933 T2935 amod high,group
R1938 T2934 T2935 compound mobility,group
R1939 T3023 T3025 amod DNA-bound,factors
R1940 T2935 T2930 pobj group,by
R1941 T2936 T2937 punct (,HMG
R1942 T2937 T2935 appos HMG,group
R1943 T2938 T2937 punct ),HMG
R1944 T3024 T3025 compound transcription,factors
R1945 T2939 T2935 conj domain,group
R1946 T2940 T2935 punct ",",group
R1947 T2941 T2935 acl consisting,group
R1948 T3025 T3021 dobj factors,assembling
R1949 T2942 T2941 prep of,consisting
R1950 T2943 T2945 nummod 79,acids
R1951 T3026 T3021 prep into,assembling
R1952 T2944 T2945 compound amino,acids
R1953 T2945 T2942 pobj acids,of
R1954 T2946 T2945 acl involved,acids
R1955 T3027 T3028 advmod biologically,active
R1956 T2947 T2946 prep in,involved
R1957 T2948 T2949 compound DNA,recognition
R1958 T2949 T2947 pobj recognition,in
R1959 T3028 T3033 amod active,complexes
R1960 T2950 T2949 cc and,recognition
R1961 T2951 T2952 amod binding,[
R1962 T2952 T2949 conj [,recognition
R1963 T2953 T2954 nummod 1,]
R1964 T3029 T3033 punct ",",complexes
R1965 T2954 T2952 appos ],[
R1966 T2955 T2920 punct .,is
R1967 T3030 T3031 advmod sterically,defined
R1968 T2956 T2959 nsubj Sox,bind
R1969 T2957 T2958 compound transcription,factors
R1970 T2958 T2959 nsubj factors,bind
R1971 T3031 T3033 amod defined,complexes
R1972 T2959 T2959 ROOT bind,bind
R1973 T2960 T2959 prep to,bind
R1974 T3032 T3033 compound multiprotein,complexes
R1975 T2961 T2963 det the,groove
R1976 T2962 T2963 amod minor,groove
R1977 T3033 T3026 pobj complexes,into
R1978 T2963 T2960 pobj groove,to
R1979 T2964 T2963 prep of,groove
R1980 T2965 T2964 pobj DNA,of
R1981 T2966 T2959 cc and,bind
R1982 T2967 T2959 conj cause,bind
R1983 T2968 T2970 det a,°
R1984 T3034 T3007 punct .,perform
R1985 T2969 T2970 nummod 70,°
R1986 T2970 T2967 dobj °,cause
R1987 T2971 T2973 nummod 85,bend
R1988 T3035 T3038 nsubjpass Sox6,reported
R1989 T2972 T2973 compound °,bend
R1990 T2973 T2970 appos bend,°
R1991 T2974 T2973 prep of,bend
R1992 T3036 T3038 aux has,reported
R1993 T2975 T2976 det the,DNA
R1994 T2976 T2974 pobj DNA,of
R1995 T2977 T2978 nsubj that,leads
R1996 T3037 T3038 auxpass been,reported
R1997 T2978 T2976 relcl leads,DNA
R1998 T2979 T2978 prep to,leads
R1999 T2980 T2982 amod local,changes
R2000 T2981 T2982 amod conformational,changes
R2001 T3038 T3038 ROOT reported,reported
R2002 T2982 T2979 pobj changes,to
R2003 T2983 T2985 compound [,]
R2004 T3039 T3040 aux to,be
R2005 T2984 T2985 compound "2,3",]
R2006 T2985 T2982 appos ],changes
R2007 T2986 T2973 punct ",",bend
R2008 T3040 T3038 xcomp be,reported
R2009 T2987 T2992 mark while,target
R2010 T2988 T2991 amod most,factors
R2011 T2989 T2991 amod other,factors
R2012 T3041 T3040 acomp able,be
R2013 T2990 T2991 compound transcription,factors
R2014 T2991 T2992 nsubj factors,target
R2015 T2992 T2973 advcl target,bend
R2016 T2993 T2995 det the,groove
R2017 T2994 T2995 amod major,groove
R2018 T2995 T2992 dobj groove,target
R2019 T2996 T2995 prep of,groove
R2020 T2997 T3000 compound DNA,]
R2021 T3042 T3043 aux to,act
R2022 T2998 T3000 nmod [,]
R2023 T2999 T3000 nummod 4,]
R2024 T3000 T2996 pobj ],of
R2025 T3043 T3041 xcomp act,able
R2026 T3001 T2959 punct .,bind
R2027 T3002 T3007 advmod Therefore,perform
R2028 T3044 T3043 prep as,act
R2029 T3003 T3007 punct ",",perform
R2030 T3004 T3005 compound Sox,proteins
R2031 T3005 T3007 nsubj proteins,perform
R2032 T3045 T3047 preconj either,activator
R2033 T3006 T3007 aux may,perform
R2034 T3007 T3007 ROOT perform,perform
R2035 T3008 T3007 dobj part,perform
R2036 T3046 T3047 det an,activator
R2037 T3009 T3008 prep of,part
R2038 T3010 T3011 poss their,function
R2039 T3047 T3044 pobj activator,as
R2040 T3011 T3009 pobj function,of
R2041 T3012 T3007 prep as,perform
R2042 T3013 T3014 amod architectural,proteins
R2043 T3048 T3047 cc or,activator
R2044 T3014 T3012 pobj proteins,as
R2045 T3015 T3007 prep by,perform
R2046 T3016 T3015 pcomp organizing,by
R2047 T3049 T3050 det a,repressor
R2048 T3017 T3019 amod local,structure
R2049 T3018 T3019 compound chromatin,structure
R2050 T3050 T3047 conj repressor,activator
R2051 T3019 T3016 dobj structure,organizing
R2052 T3020 T3016 cc and,organizing
R2053 T3021 T3016 conj assembling,organizing
R2054 T3051 T3050 punct ",",repressor
R2055 T3022 T3025 amod other,factors
R2056 T3052 T3043 prep depending,act
R2057 T3053 T3052 prep on,depending
R2058 T3054 T3055 poss its,interactors
R2059 T3055 T3053 pobj interactors,on
R2060 T3056 T3055 cc and,interactors
R2061 T3120 T3118 punct ",",restored
R2062 T3057 T3060 poss its,context
R2063 T3121 T3118 advcl indicating,restored
R2064 T3122 T3123 amod functional,overlap
R2065 T3123 T3121 dobj overlap,indicating
R2066 T3124 T3123 prep of,overlap
R2067 T3125 T3126 det these,proteins
R2068 T3058 T3059 compound target,promoter
R2069 T3126 T3124 pobj proteins,of
R2070 T3127 T3123 conj [,overlap
R2071 T3128 T3129 nummod 7,]
R2072 T3059 T3060 compound promoter,context
R2073 T3129 T3127 dobj ],[
R2074 T3130 T3118 punct .,restored
R2075 T3131 T3131 ROOT Regardless,Regardless
R2076 T3060 T3052 conj context,depending
R2077 T3132 T3131 prep of,Regardless
R2078 T3133 T3144 advmod how,demonstrated
R2079 T3134 T3135 amod Sox6,functions
R2080 T3061 T3063 compound [,]
R2081 T3135 T3144 nsubj functions,demonstrated
R2082 T3136 T3135 prep in,functions
R2083 T3062 T3063 compound "5,6",]
R2084 T3137 T3136 pcomp regulating,in
R2085 T3138 T3139 compound gene,expression
R2086 T3063 T3060 appos ],context
R2087 T3139 T3137 dobj expression,regulating
R2088 T3140 T3144 punct ",",demonstrated
R2089 T3141 T3142 amod previous,studies
R2090 T3064 T3038 punct .,reported
R2091 T3142 T3144 nsubj studies,demonstrated
R2092 T3143 T3144 aux have,demonstrated
R2093 T3144 T3132 pcomp demonstrated,of
R2094 T3065 T3071 advmod Intriguingly,shown
R2095 T3145 T3147 mark that,is
R2096 T3146 T3147 nsubj Sox6,is
R2097 T3147 T3144 ccomp is,demonstrated
R2098 T3066 T3071 punct ",",shown
R2099 T3148 T3151 det an,molecule
R2100 T3149 T3151 amod important,molecule
R2101 T3150 T3151 amod regulatory,molecule
R2102 T3067 T3071 nsubj Sox6,shown
R2103 T3151 T3147 attr molecule,is
R2104 T3152 T3153 nsubj that,plays
R2105 T3068 T3071 aux has,shown
R2106 T3153 T3151 relcl plays,molecule
R2107 T3154 T3155 det a,role
R2108 T3155 T3153 dobj role,plays
R2109 T3156 T3155 prep in,role
R2110 T3069 T3071 advmod also,shown
R2111 T3157 T3158 det the,development
R2112 T3158 T3156 pobj development,in
R2113 T3159 T3158 prep of,development
R2114 T3160 T3163 det the,system
R2115 T3161 T3163 amod central,system
R2116 T3162 T3163 amod nervous,system
R2117 T3070 T3071 auxpass been,shown
R2118 T3163 T3159 pobj system,of
R2119 T3164 T3172 nmod [,]
R2120 T3165 T3164 nummod 8,[
R2121 T3071 T3071 ROOT shown,shown
R2122 T3166 T3167 nummod 11,]
R2123 T3167 T3164 appos ],[
R2124 T3168 T3169 punct ",",cartilage
R2125 T3169 T3164 conj cartilage,[
R2126 T3072 T3073 aux to,act
R2127 T3170 T3172 compound [,]
R2128 T3171 T3172 compound "6,12,13",]
R2129 T3172 T3153 npadvmod ],plays
R2130 T3073 T3071 xcomp act,shown
R2131 T3173 T3172 punct ",",]
R2132 T3174 T3172 cc and,]
R2133 T3074 T3073 prep as,act
R2134 T3175 T3178 compound muscle,]
R2135 T3176 T3178 compound [,]
R2136 T3075 T3078 det a,factor
R2137 T3177 T3178 compound "14,15",]
R2138 T3178 T3172 conj ],]
R2139 T3179 T3131 punct .,Regardless
R2140 T3076 T3078 amod general,factor
R2141 T3180 T3183 det A,mouse
R2142 T3181 T3183 amod Sox6-null,mouse
R2143 T3182 T3183 amod mutant,mouse
R2144 T3077 T3078 compound splicing,factor
R2145 T3183 T3190 nsubjpass mouse,identified
R2146 T3184 T3185 punct (,p100H
R2147 T3185 T3183 appos p100H,mouse
R2148 T3078 T3074 pobj factor,as
R2149 T3186 T3185 punct ),p100H
R2150 T3187 T3190 aux has,identified
R2151 T3188 T3190 advmod previously,identified
R2152 T3079 T3080 nsubj that,participates
R2153 T3080 T3078 relcl participates,factor
R2154 T3189 T3190 auxpass been,identified
R2155 T3190 T3190 ROOT identified,identified
R2156 T3191 T3190 prep in,identified
R2157 T3081 T3080 prep in,participates
R2158 T3192 T3193 poss our,laboratory
R2159 T3193 T3191 pobj laboratory,in
R2160 T3082 T3084 amod pre-mRNA,[
R2161 T3194 T3196 nmod [,]
R2162 T3195 T3196 nummod 14,]
R2163 T3196 T3190 dobj ],identified
R2164 T3197 T3190 punct .,identified
R2165 T3198 T3199 compound Mice,homozygous
R2166 T3199 T3206 nsubj homozygous,develop
R2167 T3083 T3084 compound splicing,[
R2168 T3200 T3199 prep for,homozygous
R2169 T3201 T3202 amod p100H,show
R2170 T3202 T3200 pobj show,for
R2171 T3084 T3086 nmod [,]
R2172 T3203 T3204 amod delayed,growth
R2173 T3204 T3202 dobj growth,show
R2174 T3085 T3086 nummod 7,]
R2175 T3205 T3202 punct ",",show
R2176 T3206 T3206 ROOT develop,develop
R2177 T3207 T3211 nmod myopathy,block
R2178 T3086 T3081 pobj ],in
R2179 T3208 T3207 cc and,myopathy
R2180 T3209 T3207 conj arterioventricular,myopathy
R2181 T3210 T3211 compound heart,block
R2182 T3211 T3206 dobj block,develop
R2183 T3087 T3071 punct .,shown
R2184 T3212 T3206 punct ",",develop
R2185 T3213 T3206 cc and,develop
R2186 T3214 T3206 conj die,develop
R2187 T3088 T3095 nsubj Depletion,blocked
R2188 T3215 T3214 prep within,die
R2189 T3216 T3217 nummod 2,wk
R2190 T3089 T3088 prep of,Depletion
R2191 T3090 T3089 pobj Sox6,of
R2192 T3091 T3090 prep in,Sox6
R2193 T3217 T3215 pobj wk,within
R2194 T3218 T3214 prep after,die
R2195 T3219 T3218 pobj birth,after
R2196 T3092 T3093 compound HeLa,cell
R2197 T3220 T3222 nmod [,]
R2198 T3221 T3222 nummod 14,]
R2199 T3093 T3094 compound cell,extracts
R2200 T3222 T3214 conj ],die
R2201 T3223 T3206 punct .,develop
R2202 T3224 T3227 det The,allele
R2203 T3094 T3095 nsubj extracts,blocked
R2204 T3225 T3227 amod p100H,allele
R2205 T3226 T3227 amod mutant,allele
R2206 T3227 T3229 nsubjpass allele,associated
R2207 T3095 T3095 ROOT blocked,blocked
R2208 T3228 T3229 auxpass is,associated
R2209 T3229 T3229 ROOT associated,associated
R2210 T3096 T3095 dobj splicing,blocked
R2211 T3230 T3229 prep with,associated
R2212 T3231 T3234 det a,inversion
R2213 T3232 T3234 nmod Chromosome,inversion
R2214 T3233 T3232 nummod 7,Chromosome
R2215 T3234 T3230 pobj inversion,with
R2216 T3235 T3236 nsubj that,disrupts
R2217 T3097 T3096 prep of,splicing
R2218 T3236 T3234 relcl disrupts,inversion
R2219 T3237 T3240 preconj both,gene
R2220 T3238 T3240 det the,gene
R2221 T3098 T3099 amod multiple,substrates
R2222 T3239 T3240 compound p,gene
R2223 T3240 T3236 dobj gene,disrupts
R2224 T3241 T3240 cc and,gene
R2225 T3099 T3097 pobj substrates,of
R2226 T3242 T3244 det the,gene
R2227 T3243 T3244 compound Sox6,gene
R2228 T3244 T3240 conj gene,gene
R2229 T3100 T3095 punct ",",blocked
R2230 T3245 T3244 punct (,gene
R2231 T3246 T3244 cc and,gene
R2232 T3247 T3249 det no,gene
R2233 T3101 T3095 cc and,blocked
R2234 T3248 T3249 amod other,gene
R2235 T3249 T3244 conj gene,gene
R2236 T3250 T3249 prep within,gene
R2237 T3102 T3095 conj expression,blocked
R2238 T3251 T3252 nummod "50,000",nucleotides
R2239 T3252 T3250 pobj nucleotides,within
R2240 T3103 T3102 prep of,expression
R2241 T3253 T3252 prep of,nucleotides
R2242 T3254 T3256 det the,breakpoints
R2243 T3255 T3256 amod chromosomal,breakpoints
R2244 T3104 T3106 det the,domain
R2245 T3256 T3253 pobj breakpoints,of
R2246 T3257 T3229 punct ),associated
R2247 T3105 T3106 compound HMG,domain
R2248 T3258 T3260 nmod [,]
R2249 T3259 T3260 nummod 14,]
R2250 T3260 T3260 ROOT ],]
R2251 T3261 T3260 punct .,]
R2252 T3106 T3103 pobj domain,of
R2253 T3262 T3279 mark Because,implicated
R2254 T3263 T3266 det the,functions
R2255 T3107 T3106 prep of,domain
R2256 T3264 T3265 compound p,gene
R2257 T3265 T3266 compound gene,functions
R2258 T3266 T3279 advcl functions,implicated
R2259 T3108 T3118 preconj either,restored
R2260 T3267 T3268 advmod solely,in
R2261 T3268 T3266 prep in,functions
R2262 T3109 T3118 nsubj Sox6,restored
R2263 T3269 T3268 pobj pigmentation,in
R2264 T3110 T3109 punct ",",Sox6
R2265 T3270 T3272 nmod [,]
R2266 T3271 T3272 nummod 16,]
R2267 T3272 T3266 appos ],functions
R2268 T3273 T3279 punct ",",implicated
R2269 T3274 T3277 det the,factor
R2270 T3111 T3109 conj Sox9,Sox6
R2271 T3275 T3277 compound Sox6,factor
R2272 T3276 T3277 compound transcription,factor
R2273 T3112 T3111 punct ",",Sox9
R2274 T3277 T3279 nsubjpass factor,implicated
R2275 T3278 T3279 auxpass is,implicated
R2276 T3279 T3279 ROOT implicated,implicated
R2277 T3280 T3279 prep in,implicated
R2278 T3113 T3111 cc or,Sox9
R2279 T3281 T3283 det all,phenotypes
R2280 T3282 T3283 amod other,phenotypes
R2281 T3283 T3280 pobj phenotypes,in
R2282 T3114 T3111 conj Sry,Sox9
R2283 T3284 T3279 punct .,implicated
R2286 T3115 T3109 prep in,Sox6
R2290 T3116 T3117 det the,extracts
R2294 T3117 T3115 pobj extracts,in
R2298 T3118 T3095 conj restored,blocked
R2302 T3119 T3118 dobj splicing,restored

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T1529 1926-1951 Protein denotes Sox6 transcription factor
T1528 1876-1882 Protein denotes p gene
T1527 1738-1746 Positive_regulation denotes disrupts
T1526 1771-1780 Protein denotes Sox6 gene
T1525 1669-1674 Protein denotes p100H
T1524 1547-1552 Protein denotes p100H
T1523 1441-1445 Protein denotes Sox6
T1522 1282-1286 Protein denotes Sox6
T1521 1196-1200 Protein denotes Sox6
T1520 1032-1042 Gene_expression denotes expression
T1519 1032-1042 Gene_expression denotes expression
T1518 1032-1042 Gene_expression denotes expression
T1517 1032-1042 Gene_expression denotes expression
T1516 947-956 Localization denotes Depletion
T1515 1086-1089 Protein denotes Sry
T1514 1077-1081 Protein denotes Sox9
T1513 1071-1075 Protein denotes Sox6
T1512 1050-1060 Protein denotes HMG domain
T1511 960-964 Protein denotes Sox6
T1510 842-846 Protein denotes Sox6
T1509 680-684 Protein denotes Sox6
T1508 444-456 Protein denotes Sox proteins
T1507 240-244 Binding denotes bind
T1506 214-217 Protein denotes Sox
T1505 29-35 Binding denotes member
T1504 29-35 Binding denotes member
T1503 29-35 Binding denotes member
T1502 43-74 Protein denotes Sox transcription factor family
T1501 18-22 Protein denotes Sox6
T1500 0-16 Protein denotes Sry type HMG box
R753 T1500 T1504 themeOf Sry type HMG box,member
R754 T1501 T1503 themeOf Sox6,member
R755 T1501 T1505 themeOf Sox6,member
R756 T1502 T1504 themeOf Sox transcription factor family,member
R757 T1502 T1505 themeOf Sox transcription factor family,member
R758 T1506 T1507 themeOf Sox,bind
R759 T1511 T1516 themeOf Sox6,Depletion
R760 T1512 T1517 themeOf HMG domain,expression
R761 T1513 T1518 themeOf Sox6,expression
R762 T1514 T1519 themeOf Sox9,expression
R763 T1515 T1520 themeOf Sry,expression
R764 T1526 T1527 themeOf Sox6 gene,disrupts

testone

Id Subject Object Predicate Lexical cue
T1035 1738-1746 Negative_regulation denotes disrupts
T1034 1032-1042 Gene_expression denotes expression
T1033 240-244 Binding denotes bind
T1032 201-208 Binding denotes binding
T992 1926-1930 Protein denotes Sox6
T991 1876-1877 Protein denotes p
T990 1771-1775 Protein denotes Sox6
T989 1756-1757 Protein denotes p
T988 1441-1445 Protein denotes Sox6
T987 1282-1286 Protein denotes Sox6
T986 1196-1200 Protein denotes Sox6
T985 1086-1089 Protein denotes Sry
T984 1077-1081 Protein denotes Sox9
T983 1071-1075 Protein denotes Sox6
T982 960-964 Protein denotes Sox6
T981 842-846 Protein denotes Sox6
T980 680-684 Protein denotes Sox6
T979 18-22 Protein denotes Sox6
T978 0-3 Protein denotes Sry
R597 T978 T1032 themeOf Sry,binding
R598 T979 T978 equivalentTo Sox6,Sry
R599 T983 T1034 themeOf Sox6,expression
R600 T984 T1034 themeOf Sox9,expression
R601 T985 T1034 themeOf Sry,expression
R602 T989 T1035 themeOf p,disrupts
R603 T990 T1035 themeOf Sox6,disrupts

test3

Id Subject Object Predicate Lexical cue
T1137 1926-1930 Protein denotes Sox6
T1136 1876-1877 Protein denotes p
T1135 1771-1775 Protein denotes Sox6
T1134 1756-1757 Protein denotes p
T1133 1441-1445 Protein denotes Sox6
T1132 1282-1286 Protein denotes Sox6
T1131 1196-1200 Protein denotes Sox6
T1130 1086-1089 Protein denotes Sry
T1129 1077-1081 Protein denotes Sox9
T1128 1071-1075 Protein denotes Sox6
T1127 1054-1060 Entity denotes domain
T1126 1032-1042 Gene_expression denotes expression
T1125 960-964 Protein denotes Sox6
T1124 842-846 Protein denotes Sox6
T1123 680-684 Protein denotes Sox6
T1122 240-244 Binding denotes bind
T1121 18-22 Protein denotes Sox6
T1120 0-3 Protein denotes Sry
T1080 1926-1930 Protein denotes Sox6
T1079 1876-1877 Protein denotes p
T1078 1771-1775 Protein denotes Sox6
T1077 1756-1757 Protein denotes p
T1076 1441-1445 Protein denotes Sox6
T1075 1282-1286 Protein denotes Sox6
T1074 1196-1200 Protein denotes Sox6
T1073 1086-1089 Protein denotes Sry
T1072 1077-1081 Protein denotes Sox9
T1071 1071-1075 Protein denotes Sox6
T1070 960-964 Protein denotes Sox6
T1069 842-846 Protein denotes Sox6
T1068 680-684 Protein denotes Sox6
T1067 18-22 Protein denotes Sox6
T1066 0-3 Protein denotes Sry
R639 T1128 T1126 themeOf Sox6,expression
R640 T1129 T1126 themeOf Sox9,expression
R641 T1130 T1126 themeOf Sry,expression
R642 T1132 T1131 themeOf Sox6,Sox6