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PMC:1359074 / 27223-27405 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T12159 174-181 NN denotes complex
T12158 167-173 NN denotes weight
T12157 157-166 JJ denotes molecular
T12156 152-156 JJ denotes high
T12155 150-151 DT denotes a
T12154 147-149 IN denotes of
T12153 142-146 NN denotes part
T12152 139-141 VB denotes is
T12151 134-138 NN denotes Sox6
T12150 129-133 IN denotes that
T12149 118-128 VB denotes suggesting
T12148 116-117 -COMMA- denotes ,
T12147 112-116 NN denotes band
T12146 96-111 JJ denotes Sox6-associated
T12145 92-95 DT denotes the
T12144 85-91 VB denotes detect
T12143 82-84 TO denotes to
T12142 80-81 NN denotes h
T12141 76-79 CD denotes 4–8
T12140 70-75 JJ denotes least
T12139 67-69 IN denotes at
T12138 63-66 IN denotes for
T12137 59-62 NN denotes gel
T12136 57-58 NN denotes %
T12135 55-57 CD denotes –6
T12134 54-55 NN denotes %
T12133 53-54 CD denotes 4
T12132 51-52 DT denotes a
T12131 48-50 IN denotes on
T12130 32-47 NN denotes electrophoresis
T12129 28-31 DT denotes the
T12128 24-27 VB denotes run
T12127 21-23 TO denotes to
T12126 17-20 VB denotes had
T12125 14-16 PRP denotes we
T12124 12-13 -COMMA- denotes ,
T12123 7-12 NN denotes EMSAs
T12122 3-6 PRP-DOLLAR- denotes our
T12121 0-2 IN denotes In
R7991 T12123 T12121 arg2Of EMSAs,In
R7992 T12123 T12122 arg1Of EMSAs,our
R7993 T12125 T12126 arg1Of we,had
R7994 T12125 T12128 arg1Of we,run
R7995 T12126 T12121 arg1Of had,In
R7996 T12126 T12124 arg1Of had,","
R7997 T12128 T12126 arg2Of run,had
R7998 T12128 T12127 arg1Of run,to
R7999 T12128 T12131 arg1Of run,on
R8000 T12128 T12138 arg1Of run,for
R8001 T12128 T12143 modOf run,to
R8002 T12128 T12148 arg1Of run,","
R8003 T12128 T12149 modOf run,suggesting
R8004 T12130 T12128 arg2Of electrophoresis,run
R8005 T12130 T12129 arg1Of electrophoresis,the
R8006 T12135 T12136 arg1Of –6,%
R8007 T12137 T12131 arg2Of gel,on
R8008 T12137 T12132 arg1Of gel,a
R8009 T12137 T12133 arg1Of gel,4
R8010 T12137 T12134 arg1Of gel,%
R8011 T12137 T12135 arg1Of gel,–6
R8012 T12141 T12139 arg1Of 4–8,at
R8013 T12141 T12140 arg1Of 4–8,least
R8014 T12142 T12138 arg2Of h,for
R8015 T12142 T12141 arg1Of h,4–8
R8016 T12144 T12143 arg1Of detect,to
R8017 T12147 T12144 arg2Of band,detect
R8018 T12147 T12145 arg1Of band,the
R8019 T12147 T12146 arg1Of band,Sox6-associated
R8020 T12151 T12152 arg1Of Sox6,is
R8021 T12152 T12149 arg2Of is,suggesting
R8022 T12152 T12150 arg1Of is,that
R8023 T12153 T12152 arg2Of part,is
R8024 T12153 T12154 arg1Of part,of
R8025 T12159 T12154 arg2Of complex,of
R8026 T12159 T12155 arg1Of complex,a
R8027 T12159 T12156 arg1Of complex,high
R8028 T12159 T12157 arg1Of complex,molecular
R8029 T12159 T12158 arg1Of complex,weight

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T11485 134-138 Protein denotes Sox6
T11484 96-100 Protein denotes Sox6

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T13261 134-138 http://www.uniprot.org/uniprot/P35712 denotes Sox6
T13260 96-100 http://www.uniprot.org/uniprot/P35712 denotes Sox6

sentences

Id Subject Object Predicate Lexical cue
T11161 0-182 Sentence denotes In our EMSAs, we had to run the electrophoresis on a 4%–6% gel for at least 4–8 h to detect the Sox6-associated band, suggesting that Sox6 is part of a high molecular weight complex.
T210 0-182 Sentence denotes In our EMSAs, we had to run the electrophoresis on a 4%–6% gel for at least 4–8 h to detect the Sox6-associated band, suggesting that Sox6 is part of a high molecular weight complex.

simple1

Id Subject Object Predicate Lexical cue
T11749 134-138 Protein denotes Sox6
T11748 96-100 Protein denotes Sox6

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T15720 134-138 Protein denotes Sox6
T15719 96-100 Protein denotes Sox6

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T13387 101-111 Binding denotes associated
T13310 134-138 Protein denotes Sox6
T13309 96-100 Protein denotes Sox6
R9185 T13309 T13387 themeOf Sox6,associated

DLUT931

Id Subject Object Predicate Lexical cue
T13639 101-111 Binding denotes associated
T13556 134-138 Protein denotes Sox6
T13555 96-100 Protein denotes Sox6
R9287 T13555 T13639 themeOf Sox6,associated

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T15515 147-181 Entity denotes of a high molecular weight complex
T15482 51-62 Entity denotes a 4%–6% gel
T15663 129-138 Protein denotes that Sox6
T15651 70-117 Entity denotes least 4–8 h to detect the Sox6-associated band,
T15643 96-111 Protein denotes Sox6-associated

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T14160 181-182 . denotes .
T14159 174-181 NN denotes complex
T14158 167-173 NN denotes weight
T14157 157-166 JJ denotes molecular
T14156 152-156 JJ denotes high
T14155 150-151 DT denotes a
T14154 147-149 IN denotes of
T14153 142-146 NN denotes part
T14152 139-141 VBZ denotes is
T14151 134-138 NNP denotes Sox6
T14150 129-133 IN denotes that
T14149 118-128 VBG denotes suggesting
T14148 116-117 , denotes ,
T14147 112-116 NN denotes band
T14146 96-111 JJ denotes Sox6-associated
T14145 92-95 DT denotes the
T14144 85-91 VB denotes detect
T14143 82-84 TO denotes to
T14142 80-81 NN denotes h
T14141 78-79 CD denotes 8
T14140 76-77 CD denotes 4
T14139 70-75 JJS denotes least
T14138 67-69 IN denotes at
T14137 63-66 IN denotes for
T14136 59-62 NN denotes gel
T14135 57-58 NN denotes %
T14134 56-57 CD denotes 6
T14133 54-55 NN denotes %
T14132 53-54 CD denotes 4
T14131 51-52 DT denotes a
T14130 48-50 IN denotes on
T14129 32-47 NN denotes electrophoresis
T14128 28-31 DT denotes the
T14127 24-27 VB denotes run
T14126 21-23 TO denotes to
T14125 17-20 VBD denotes had
T14124 14-16 PRP denotes we
T14123 12-13 , denotes ,
T14122 7-12 NNS denotes EMSAs
T14121 3-6 PRP$ denotes our
T14120 0-2 IN denotes In
R9658 T14120 T14125 prep In,had
R9659 T14121 T14122 poss our,EMSAs
R9660 T14122 T14120 pobj EMSAs,In
R9661 T14123 T14125 punct ",",had
R9663 T14124 T14125 nsubj we,had
R9664 T14125 T14125 ROOT had,had
R9666 T14126 T14127 aux to,run
R9667 T14127 T14125 xcomp run,had
R9668 T14128 T14129 det the,electrophoresis
R9669 T14129 T14127 dobj electrophoresis,run
R9671 T14130 T14127 prep on,run
R9672 T14131 T14133 det a,%
R9674 T14132 T14133 nummod 4,%
R9675 T14133 T14136 nmod %,gel
R9676 T14134 T14135 nummod 6,%
R9678 T14135 T14136 compound %,gel
R9681 T14136 T14130 pobj gel,on
R9682 T14137 T14127 prep for,run
R9684 T14138 T14139 advmod at,least
R9685 T14139 T14140 advmod least,4
R9687 T14140 T14137 pobj 4,for
R9688 T14141 T14142 nummod 8,h
R9689 T14142 T14140 appos h,4
R9691 T14143 T14144 aux to,detect
R9692 T14144 T14127 advcl detect,run
R9696 T14145 T14147 det the,band
R9697 T14146 T14147 amod Sox6-associated,band
R9699 T14147 T14144 dobj band,detect
R9701 T14148 T14125 punct ",",had
R9702 T14149 T14125 advcl suggesting,had
R9703 T14150 T14152 mark that,is
R9704 T14151 T14152 nsubj Sox6,is
R9706 T14152 T14149 ccomp is,suggesting
R9707 T14153 T14152 attr part,is
R9708 T14154 T14153 prep of,part
R9709 T14155 T14159 det a,complex
R9710 T14156 T14158 amod high,weight
R9712 T14157 T14158 amod molecular,weight
R9713 T14158 T14159 compound weight,complex
R9714 T14159 T14154 pobj complex,of
R9716 T14160 T14125 punct .,had

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T13432 134-138 Protein denotes Sox6
T13431 96-100 Protein denotes Sox6

testone

Id Subject Object Predicate Lexical cue
T10802 134-138 Protein denotes Sox6
T10801 96-100 Protein denotes Sox6

test3

Id Subject Object Predicate Lexical cue
T11052 134-138 Protein denotes Sox6
T11051 96-100 Protein denotes Sox6
T10947 134-138 Protein denotes Sox6
T10946 96-100 Protein denotes Sox6