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PMC:1359074 / 26409-26601 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T11998 89-95 VB denotes harbor
T11997 80-88 RB denotes probably
T11996 78-79 -COMMA- denotes ,
T11995 74-78 NN denotes Sox6
T11994 71-73 IN denotes as
T11993 66-70 JJ denotes such
T11992 64-65 -COMMA- denotes ,
T11991 56-64 NN denotes proteins
T11990 52-55 NN denotes Sox
T11989 50-51 NN denotes D
T11988 44-49 NN denotes group
T11987 40-43 IN denotes for
T11986 34-39 NN denotes genes
T11985 27-33 NN denotes target
T11984 22-26 IN denotes that
T11983 14-21 VB denotes appears
T11982 11-13 PRP denotes it
T11981 9-10 -COMMA- denotes ,
T11980 0-9 RB denotes Therefore
T12013 185-191 NN denotes dimers
T12012 177-184 NN denotes protein
T12011 171-176 NN denotes D-Sox
T12010 168-170 IN denotes of
T12009 160-167 NN denotes binding
T12008 155-159 IN denotes with
T12007 144-154 JJ denotes compatible
T12006 130-143 NN denotes configuration
T12005 128-129 DT denotes a
T12004 123-127 IN denotes with
T12003 117-122 NN denotes sites
T12002 109-116 NN denotes binding
T12001 105-108 NN denotes HMG
T12000 102-104 IN denotes of
T11999 96-101 NN denotes pairs
R7851 T11982 T11983 arg1Of it,appears
R7852 T11983 T11980 arg1Of appears,Therefore
R7853 T11983 T11981 arg1Of appears,","
R7854 T11986 T11985 arg1Of genes,target
R7855 T11986 T11987 arg1Of genes,for
R7856 T11986 T11998 arg1Of genes,harbor
R7857 T11991 T11987 arg2Of proteins,for
R7858 T11991 T11988 arg1Of proteins,group
R7859 T11991 T11989 arg1Of proteins,D
R7860 T11991 T11990 arg1Of proteins,Sox
R7861 T11991 T11992 arg1Of proteins,","
R7862 T11991 T11994 arg1Of proteins,as
R7863 T11994 T11993 arg1Of as,such
R7864 T11995 T11994 arg2Of Sox6,as
R7865 T11998 T11983 arg2Of harbor,appears
R7866 T11998 T11984 arg1Of harbor,that
R7867 T11998 T11996 arg1Of harbor,","
R7868 T11998 T11997 arg1Of harbor,probably
R7869 T11999 T11998 arg2Of pairs,harbor
R7870 T11999 T12000 arg1Of pairs,of
R7871 T12003 T12000 arg2Of sites,of
R7872 T12003 T12001 arg1Of sites,HMG
R7873 T12003 T12002 arg1Of sites,binding
R7874 T12003 T12004 arg1Of sites,with
R7875 T12006 T12004 arg2Of configuration,with
R7876 T12006 T12005 arg1Of configuration,a
R7877 T12006 T12007 arg1Of configuration,compatible
R7878 T12007 T12008 arg1Of compatible,with
R7879 T12009 T12008 arg2Of binding,with
R7880 T12009 T12010 arg1Of binding,of
R7881 T12013 T12010 arg2Of dimers,of
R7882 T12013 T12011 arg1Of dimers,D-Sox
R7883 T12013 T12012 arg1Of dimers,protein

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T11477 74-78 Protein denotes Sox6

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T13255 74-78 http://www.uniprot.org/uniprot/P35712 denotes Sox6

GO-MF

Id Subject Object Predicate Lexical cue
T11581 160-167 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T11580 109-116 http://purl.obolibrary.org/obo/GO_0005488 denotes binding

sentences

Id Subject Object Predicate Lexical cue
T11156 0-192 Sentence denotes Therefore, it appears that target genes for group D Sox proteins, such as Sox6, probably harbor pairs of HMG binding sites with a configuration compatible with binding of D-Sox protein dimers.
T205 0-192 Sentence denotes Therefore, it appears that target genes for group D Sox proteins, such as Sox6, probably harbor pairs of HMG binding sites with a configuration compatible with binding of D-Sox protein dimers.

simple1

Id Subject Object Predicate Lexical cue
T11741 74-78 Protein denotes Sox6

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T15712 74-78 Protein denotes Sox6

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T13302 74-78 Protein denotes Sox6

DLUT931

Id Subject Object Predicate Lexical cue
T13548 74-78 Protein denotes Sox6

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T15686 155-191 Binding denotes with binding of D-Sox protein dimers
T15598 50-78 Protein denotes D Sox proteins, such as Sox6
T15570 168-191 Protein denotes of D-Sox protein dimers
T15499 168-191 Entity denotes of D-Sox protein dimers
T15470 34-49 Protein denotes genes for group
T15466 52-73 Protein denotes Sox proteins, such as
T15668 52-55 Protein denotes Sox
T15639 168-191 Protein denotes of D-Sox protein dimers
R10977 T15570 T15686 themeOf of D-Sox protein dimers,with binding of D-Sox protein dimers

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T14008 191-192 . denotes .
T14007 185-191 NNS denotes dimers
T14006 177-184 NN denotes protein
T14005 171-176 JJ denotes D-Sox
T14004 168-170 IN denotes of
T14003 160-167 JJ denotes binding
T14002 155-159 IN denotes with
T14001 144-154 JJ denotes compatible
T14000 130-143 NN denotes configuration
T13999 128-129 DT denotes a
T13998 123-127 IN denotes with
T13997 117-122 NNS denotes sites
T13996 109-116 JJ denotes binding
T13995 105-108 NNP denotes HMG
T13994 102-104 IN denotes of
T13993 96-101 NNS denotes pairs
T13992 89-95 NN denotes harbor
T13991 80-88 RB denotes probably
T13990 78-79 , denotes ,
T13989 74-78 NNP denotes Sox6
T13988 71-73 IN denotes as
T13987 66-70 JJ denotes such
T13986 64-65 , denotes ,
T13985 56-64 NNS denotes proteins
T13984 52-55 NNP denotes Sox
T13983 50-51 NNP denotes D
T13982 44-49 NN denotes group
T13981 40-43 IN denotes for
T13980 34-39 NNS denotes genes
T13979 27-33 NN denotes target
T13978 22-26 IN denotes that
T13977 14-21 VBZ denotes appears
T13976 11-13 PRP denotes it
T13975 9-10 , denotes ,
T13974 0-9 RB denotes Therefore
R9555 T13974 T13977 advmod Therefore,appears
R9563 T13975 T13977 punct ",",appears
R9568 T13976 T13977 nsubj it,appears
R9572 T13977 T13977 ROOT appears,appears
R9575 T13978 T13992 mark that,harbor
R9579 T13979 T13980 compound target,genes
R9583 T13980 T13992 nsubj genes,harbor
R9587 T13981 T13980 prep for,genes
R9588 T13982 T13985 nmod group,proteins
R9589 T13983 T13985 amod D,proteins
R9590 T13984 T13985 compound Sox,proteins
R9591 T13985 T13992 nsubj proteins,harbor
R9593 T13986 T13985 punct ",",proteins
R9597 T13987 T13988 amod such,as
R9600 T13988 T13985 prep as,proteins
R9603 T13989 T13988 pobj Sox6,as
R9610 T13990 T13989 punct ",",Sox6
R9615 T13991 T13992 advmod probably,harbor
R9618 T13992 T13977 oprd harbor,appears
R9622 T13993 T13992 dobj pairs,harbor
R9626 T13994 T13993 prep of,pairs
R9630 T13995 T13997 nmod HMG,sites
R9632 T13996 T13997 amod binding,sites
R9636 T13997 T13994 pobj sites,of
R9640 T13998 T13997 prep with,sites
R9643 T13999 T14000 det a,configuration
R9647 T14000 T13998 pobj configuration,with
R9651 T14001 T14000 amod compatible,configuration
R9654 T14002 T14001 prep with,compatible
R9662 T14003 T14002 pobj binding,with
R9665 T14004 T14003 prep of,binding
R9670 T14005 T14007 amod D-Sox,dimers
R9673 T14006 T14007 compound protein,dimers
R9677 T14007 T14004 pobj dimers,of
R9679 T14008 T13977 punct .,appears

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T11627 89-95 Binding denotes harbor
T11626 89-95 Binding denotes harbor
T11625 171-184 Protein denotes D-Sox protein
T11624 105-108 Protein denotes HMG
T11623 74-78 Protein denotes Sox6
T11622 44-64 Protein denotes group D Sox proteins
T11628 160-167 Binding denotes binding
R7687 T11622 T11626 themeOf group D Sox proteins,harbor
R7688 T11623 T11627 themeOf Sox6,harbor
R7689 T11625 T11628 themeOf D-Sox protein,binding

testone

Id Subject Object Predicate Lexical cue
T10794 74-78 Protein denotes Sox6
T10885 160-167 Binding denotes binding
T10884 117-122 Entity denotes sites

test3

Id Subject Object Predicate Lexical cue
T11042 160-167 Binding denotes binding
T11041 109-116 Entity denotes binding
T11040 74-78 Protein denotes Sox6
T10939 74-78 Protein denotes Sox6
R7501 T11040 T11042 themeOf Sox6,binding