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PMC:1359074 / 22994-23143 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T9977 147-148 -RRB- denotes )
T9976 145-147 NN denotes 6B
T9975 138-144 NN denotes Figure
T9974 137-138 -LRB- denotes (
T9973 133-136 NN denotes dpc
T9972 129-132 CD denotes 7.5
T9971 126-128 IN denotes at
T9970 118-125 NN denotes islands
T9969 112-117 NN denotes blood
T9968 108-111 NN denotes sac
T9967 103-107 NN denotes yolk
T9966 100-102 IN denotes in
T9965 96-99 RB denotes not
T9964 92-95 CC denotes but
T9963 90-91 -COMMA- denotes ,
T9962 85-90 NN denotes liver
T9961 76-84 NN denotes 12.5-dpc
T9960 73-75 IN denotes in
T9959 61-72 VB denotes transcribed
T9958 54-60 RB denotes highly
T9957 51-53 VB denotes is
T9956 46-50 NN denotes Sox6
T9955 41-45 IN denotes that
T9954 35-40 VB denotes shows
T9953 21-34 NN denotes hybridization
T9952 16-20 FW denotes situ
T9951 13-15 FW denotes in
T9950 11-12 -COMMA- denotes ,
T9949 0-11 RB denotes Furthermore
R6867 T9952 T9951 arg1Of situ,in
R6868 T9953 T9952 arg1Of hybridization,situ
R6869 T9953 T9954 arg1Of hybridization,shows
R6870 T9954 T9949 arg1Of shows,Furthermore
R6871 T9954 T9950 arg1Of shows,","
R6872 T9956 T9957 arg1Of Sox6,is
R6873 T9956 T9959 arg2Of Sox6,transcribed
R6874 T9959 T9954 arg2Of transcribed,shows
R6875 T9959 T9955 arg1Of transcribed,that
R6876 T9959 T9957 arg2Of transcribed,is
R6877 T9959 T9958 arg1Of transcribed,highly
R6878 T9959 T9960 arg1Of transcribed,in
R6879 T9959 T9966 arg1Of transcribed,in
R6880 T9960 T9964 arg1Of in,but
R6881 T9962 T9960 arg2Of liver,in
R6882 T9962 T9961 arg1Of liver,12.5-dpc
R6883 T9964 T9963 arg1Of but,","
R6884 T9966 T9964 arg2Of in,but
R6885 T9966 T9965 arg1Of in,not
R6886 T9970 T9966 arg2Of islands,in
R6887 T9970 T9967 arg1Of islands,yolk
R6888 T9970 T9968 arg1Of islands,sac
R6889 T9970 T9969 arg1Of islands,blood
R6890 T9970 T9971 arg1Of islands,at
R6891 T9973 T9971 arg2Of dpc,at
R6892 T9973 T9972 arg1Of dpc,7.5
R6893 T9973 T9974 arg1Of dpc,(
R6894 T9976 T9974 arg2Of 6B,(
R6895 T9976 T9975 arg1Of 6B,Figure
R6896 T9977 T9974 arg3Of ),(

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T9826 46-50 Protein denotes Sox6

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T10035 46-50 http://www.uniprot.org/uniprot/P35712 denotes Sox6

UBERON-AE

Id Subject Object Predicate Lexical cue
T9781 112-125 http://purl.obolibrary.org/obo/UBERON_0003061 denotes blood islands
T9780 112-117 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T9779 108-111 http://purl.obolibrary.org/obo/UBERON_0009856 denotes sac
T9778 103-125 http://purl.obolibrary.org/obo/UBERON_0011919 denotes yolk sac blood islands
T9777 103-111 http://purl.obolibrary.org/obo/UBERON_0001040 denotes yolk sac
T9776 103-107 http://purl.obolibrary.org/obo/UBERON_2000084 denotes yolk
T9774 85-90 http://purl.obolibrary.org/obo/UBERON_0002107 denotes liver

GO-CC

Id Subject Object Predicate Lexical cue
T9834 103-107 http://purl.obolibrary.org/obo/GO_0060417 denotes yolk

sentences

Id Subject Object Predicate Lexical cue
T9786 0-149 Sentence denotes Furthermore, in situ hybridization shows that Sox6 is highly transcribed in 12.5-dpc liver, but not in yolk sac blood islands at 7.5 dpc (Figure 6B).
T171 0-149 Sentence denotes Furthermore, in situ hybridization shows that Sox6 is highly transcribed in 12.5-dpc liver, but not in yolk sac blood islands at 7.5 dpc (Figure 6B).

simple1

Id Subject Object Predicate Lexical cue
T9858 46-50 Protein denotes Sox6

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T10319 61-72 Transcription denotes transcribed
T10311 46-50 Protein denotes Sox6
R7156 T10311 T10319 themeOf Sox6,transcribed

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T10044 46-50 Protein denotes Sox6

DLUT931

Id Subject Object Predicate Lexical cue
T10070 46-50 Protein denotes Sox6

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T10303 13-148 Transcription denotes in situ hybridization shows that Sox6 is highly transcribed in 12.5-dpc liver, but not in yolk sac blood islands at 7.5 dpc (Figure 6B)
T10296 108-111 Protein denotes sac
T10293 129-148 Entity denotes 7.5 dpc (Figure 6B)
T10292 46-50 Protein denotes Sox6
T10290 103-107 Entity denotes yolk
R7150 T10292 T10303 themeOf Sox6,"in situ hybridization shows that Sox6 is highly transcribed in 12.5-dpc liver, but not in yolk sac blood islands at 7.5 dpc (Figure 6B)"

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T10213 148-149 . denotes .
T10212 147-148 -RRB- denotes )
T10211 145-147 NN denotes 6B
T10210 138-144 NN denotes Figure
T10209 137-138 -LRB- denotes (
T10208 133-136 NN denotes dpc
T10207 129-132 CD denotes 7.5
T10206 126-128 IN denotes at
T10205 118-125 NNS denotes islands
T10204 112-117 NN denotes blood
T10203 108-111 NN denotes sac
T10202 103-107 NN denotes yolk
T10201 100-102 IN denotes in
T10200 96-99 RB denotes not
T10199 92-95 CC denotes but
T10198 90-91 , denotes ,
T10197 85-90 NN denotes liver
T10196 76-84 JJ denotes 12.5-dpc
T10195 73-75 IN denotes in
T10194 61-72 VBN denotes transcribed
T10193 54-60 RB denotes highly
T10192 51-53 VBZ denotes is
T10191 46-50 NNP denotes Sox6
T10190 41-45 IN denotes that
T10189 35-40 VBZ denotes shows
T10188 21-34 NN denotes hybridization
T10187 16-20 NN denotes situ
T10186 13-15 IN denotes in
T10185 11-12 , denotes ,
T10184 0-11 RB denotes Furthermore
R7059 T10184 T10189 advmod Furthermore,shows
R7060 T10185 T10189 punct ",",shows
R7061 T10186 T10189 prep in,shows
R7062 T10187 T10188 compound situ,hybridization
R7063 T10188 T10189 compound hybridization,shows
R7064 T10189 T10189 ROOT shows,shows
R7065 T10190 T10194 mark that,transcribed
R7066 T10191 T10194 nsubjpass Sox6,transcribed
R7067 T10192 T10194 auxpass is,transcribed
R7068 T10193 T10194 advmod highly,transcribed
R7069 T10194 T10189 ccomp transcribed,shows
R7070 T10195 T10194 prep in,transcribed
R7071 T10196 T10197 amod 12.5-dpc,liver
R7072 T10197 T10195 pobj liver,in
R7073 T10198 T10194 punct ",",transcribed
R7074 T10199 T10194 cc but,transcribed
R7075 T10200 T10201 neg not,in
R7076 T10201 T10206 prep in,at
R7077 T10202 T10203 compound yolk,sac
R7078 T10203 T10205 compound sac,islands
R7079 T10204 T10205 compound blood,islands
R7080 T10205 T10201 pobj islands,in
R7081 T10206 T10194 conj at,transcribed
R7082 T10207 T10208 nummod 7.5,dpc
R7083 T10208 T10206 pobj dpc,at
R7084 T10209 T10211 punct (,6B
R7085 T10210 T10211 compound Figure,6B
R7086 T10211 T10208 appos 6B,dpc
R7087 T10212 T10211 punct ),6B
R7088 T10213 T10189 punct .,shows

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T9846 61-72 Transcription denotes transcribed
T9845 46-50 Protein denotes Sox6
R6778 T9845 T9846 themeOf Sox6,transcribed

testone

Id Subject Object Predicate Lexical cue
T9743 46-50 Protein denotes Sox6

test3

Id Subject Object Predicate Lexical cue
T9767 46-50 Protein denotes Sox6
T9757 46-50 Protein denotes Sox6