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PMC:1359074 / 22509-23467 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T10029 943-957 NN denotes erythropoiesis
T10028 932-942 JJ denotes definitive
T10027 929-931 IN denotes in
T10026 919-928 NN denotes functions
T10025 914-918 NN denotes Sox6
T10024 909-913 IN denotes that
T10023 897-908 VB denotes demonstrate
T10022 895-896 -COMMA- denotes ,
T10021 894-895 -RRB- denotes )
T10020 893-894 CD denotes 5
T10019 886-892 NN denotes Figure
T10018 885-886 -LRB- denotes (
T10017 880-884 NN denotes mice
T10016 873-879 JJ denotes mutant
T10015 867-872 NN denotes p100H
T10014 858-866 JJ denotes 14.5-dpc
T10013 855-857 IN denotes of
T10012 849-854 NN denotes cells
T10011 843-848 NN denotes liver
T10010 839-842 DT denotes the
T10009 836-838 IN denotes in
T10008 826-835 VB denotes expressed
T10007 819-825 RB denotes highly
T10006 816-818 VB denotes is
T10005 809-815 NN denotes globin
T10004 806-808 JJ denotes ɛy
T10003 801-805 IN denotes that
T10002 789-800 NN denotes observation
T10001 785-788 DT denotes the
T10000 780-784 IN denotes with
T9999 771-779 RB denotes together
T9998 765-770 VB denotes taken
T9997 763-764 -COMMA- denotes ,
T9996 759-763 NN denotes data
T9995 753-758 DT denotes These
T9994 737-751 NN denotes erythropoiesis
T9993 735-736 -COMMA- denotes ,
T9992 726-735 JJ denotes primitive
T9991 722-725 RB denotes not
T9990 718-721 CC denotes but
T9989 716-717 -COMMA- denotes ,
T9988 706-716 JJ denotes definitive
T9987 701-705 IN denotes with
T9986 690-700 JJ denotes coincident
T9985 680-689 RB denotes spatially
T9984 676-679 CC denotes and
T9983 665-675 RB denotes temporally
T9982 662-664 VB denotes is
T9981 651-661 NN denotes expression
T9980 646-650 NN denotes Sox6
T9979 644-645 -COMMA- denotes ,
T9978 635-644 RB denotes Therefore
T9977 632-633 -RRB- denotes )
T9976 630-632 NN denotes 6B
T9975 623-629 NN denotes Figure
T9974 622-623 -LRB- denotes (
T9973 618-621 NN denotes dpc
T9972 614-617 CD denotes 7.5
T9971 611-613 IN denotes at
T9970 603-610 NN denotes islands
T9969 597-602 NN denotes blood
T9968 593-596 NN denotes sac
T9967 588-592 NN denotes yolk
T9966 585-587 IN denotes in
T9965 581-584 RB denotes not
T9964 577-580 CC denotes but
T9963 575-576 -COMMA- denotes ,
T9962 570-575 NN denotes liver
T9961 561-569 NN denotes 12.5-dpc
T9960 558-560 IN denotes in
T9959 546-557 VB denotes transcribed
T9958 539-545 RB denotes highly
T9957 536-538 VB denotes is
T9956 531-535 NN denotes Sox6
T9955 526-530 IN denotes that
T9954 520-525 VB denotes shows
T9953 506-519 NN denotes hybridization
T9952 501-505 FW denotes situ
T9951 498-500 FW denotes in
T9950 496-497 -COMMA- denotes ,
T9949 485-496 RB denotes Furthermore
T9948 478-483 NN denotes liver
T9947 474-477 DT denotes the
T9946 471-473 IN denotes in
T9945 456-470 NN denotes erythropoiesis
T9944 445-455 JJ denotes definitive
T9943 442-444 IN denotes of
T9942 436-441 NN denotes onset
T9941 427-435 JJ denotes temporal
T9940 423-426 DT denotes the
T9939 418-422 IN denotes with
T9938 407-417 JJ denotes coincident
T9937 405-406 -COMMA- denotes ,
T9936 402-405 NN denotes dpc
T9935 397-401 CD denotes 10.5
T9934 394-396 IN denotes at
T9933 384-393 VB denotes beginning
T9932 379-383 NN denotes blot
T9931 370-378 JJ denotes Northern
T9930 367-369 IN denotes by
T9929 356-366 JJ denotes detectable
T9928 353-355 VB denotes is
T9927 348-352 NN denotes Sox6
T9926 346-347 -COMMA- denotes ,
T9925 344-346 NN denotes 6A
T9924 337-343 NN denotes Figure
T9923 334-336 IN denotes in
T9922 328-333 VB denotes shown
T9921 325-327 IN denotes As
T9920 315-323 VB denotes employed
T9919 310-314 VB denotes were
T9918 303-309 NN denotes assays
T9917 289-302 NN denotes hybridization
T9916 284-288 FW denotes situ
T9915 281-283 FW denotes in
T9914 277-280 CC denotes and
T9913 272-276 NN denotes blot
T9912 263-271 NN denotes Northern
T9911 261-262 -COMMA- denotes ,
T9910 257-261 NN denotes Sox6
T9909 254-256 IN denotes of
T9908 246-253 NN denotes pattern
T9907 235-245 NN denotes expression
T9906 227-234 JJ denotes spatial
T9905 223-226 CC denotes and
T9904 214-222 JJ denotes temporal
T9903 210-213 DT denotes the
T9902 200-209 VB denotes determine
T9901 197-199 TO denotes To
T9900 181-195 NN denotes erythropoiesis
T9899 170-180 JJ denotes definitive
T9898 167-169 IN denotes in
T9897 157-166 NN denotes regulator
T9896 147-156 JJ denotes important
T9895 144-146 DT denotes an
T9894 141-143 VB denotes is
T9878 41-52 RB denotes ectopically
T9877 36-40 NN denotes mice
T9876 21-35 JJ denotes Sox6-deficient
T9875 16-20 IN denotes that
T9874 4-15 NN denotes observation
T9873 0-3 DT denotes The
T9893 136-140 NN denotes Sox6
T9892 131-135 IN denotes that
T9891 122-130 VB denotes suggests
T9890 120-121 -COMMA- denotes ,
T9889 114-120 VB denotes mature
T9888 108-113 NN denotes cells
T9887 98-107 JJ denotes erythroid
T9886 87-97 JJ denotes definitive
T9885 81-86 WRB denotes where
T9884 79-80 -COMMA- denotes ,
T9883 74-79 NN denotes liver
T9882 71-73 IN denotes in
T9881 64-70 NN denotes globin
T9880 61-63 JJ denotes ɛy
T9879 53-60 VB denotes express
R6791 T9874 T9873 arg1Of observation,The
R6792 T9874 T9891 arg1Of observation,suggests
R6793 T9877 T9876 arg1Of mice,Sox6-deficient
R6794 T9877 T9879 arg1Of mice,express
R6795 T9879 T9874 arg2Of express,observation
R6796 T9879 T9875 arg1Of express,that
R6797 T9879 T9878 arg1Of express,ectopically
R6798 T9879 T9882 arg1Of express,in
R6799 T9881 T9879 arg2Of globin,express
R6800 T9881 T9880 arg1Of globin,ɛy
R6801 T9883 T9882 arg2Of liver,in
R6802 T9883 T9884 arg1Of liver,","
R6803 T9883 T9885 arg1Of liver,where
R6804 T9888 T9886 arg1Of cells,definitive
R6805 T9888 T9887 arg1Of cells,erythroid
R6806 T9888 T9889 arg1Of cells,mature
R6807 T9889 T9885 arg2Of mature,where
R6808 T9891 T9890 arg1Of suggests,","
R6809 T9893 T9894 arg1Of Sox6,is
R6810 T9894 T9891 arg2Of is,suggests
R6811 T9894 T9892 arg1Of is,that
R6812 T9897 T9894 arg2Of regulator,is
R6813 T9897 T9895 arg1Of regulator,an
R6814 T9897 T9896 arg1Of regulator,important
R6815 T9897 T9898 arg1Of regulator,in
R6816 T9900 T9898 arg2Of erythropoiesis,in
R6817 T9900 T9899 arg1Of erythropoiesis,definitive
R6818 T9902 T9901 arg1Of determine,To
R6819 T9904 T9905 arg1Of temporal,and
R6820 T9906 T9905 arg2Of spatial,and
R6821 T9908 T9902 arg2Of pattern,determine
R6822 T9908 T9903 arg1Of pattern,the
R6823 T9908 T9904 arg1Of pattern,temporal
R6824 T9908 T9906 arg1Of pattern,spatial
R6825 T9908 T9907 arg1Of pattern,expression
R6826 T9908 T9909 arg1Of pattern,of
R6827 T9910 T9909 arg2Of Sox6,of
R6828 T9913 T9912 arg1Of blot,Northern
R6829 T9913 T9914 arg1Of blot,and
R6830 T9914 T9919 arg1Of and,were
R6831 T9914 T9920 arg2Of and,employed
R6832 T9916 T9915 arg1Of situ,in
R6833 T9918 T9914 arg2Of assays,and
R6834 T9918 T9916 arg1Of assays,situ
R6835 T9918 T9917 arg1Of assays,hybridization
R6836 T9920 T9901 modOf employed,To
R6837 T9920 T9911 arg1Of employed,","
R6838 T9920 T9919 arg2Of employed,were
R6839 T9922 T9921 arg2Of shown,As
R6840 T9922 T9923 arg1Of shown,in
R6841 T9925 T9923 arg2Of 6A,in
R6842 T9925 T9924 arg1Of 6A,Figure
R6843 T9927 T9928 arg1Of Sox6,is
R6844 T9927 T9929 arg1Of Sox6,detectable
R6845 T9928 T9921 arg1Of is,As
R6846 T9928 T9926 arg1Of is,","
R6847 T9928 T9937 arg1Of is,","
R6848 T9928 T9938 arg1Of is,coincident
R6849 T9929 T9928 arg2Of detectable,is
R6850 T9929 T9930 arg1Of detectable,by
R6851 T9932 T9930 arg2Of blot,by
R6852 T9932 T9931 arg1Of blot,Northern
R6853 T9932 T9933 arg1Of blot,beginning
R6854 T9933 T9934 arg1Of beginning,at
R6855 T9936 T9934 arg2Of dpc,at
R6856 T9936 T9935 arg1Of dpc,10.5
R6857 T9938 T9939 arg1Of coincident,with
R6858 T9942 T9939 arg2Of onset,with
R6859 T9942 T9940 arg1Of onset,the
R6860 T9942 T9941 arg1Of onset,temporal
R6861 T9942 T9943 arg1Of onset,of
R6862 T9942 T9946 arg1Of onset,in
R6863 T9945 T9943 arg2Of erythropoiesis,of
R6864 T9945 T9944 arg1Of erythropoiesis,definitive
R6865 T9948 T9946 arg2Of liver,in
R6866 T9948 T9947 arg1Of liver,the
R6867 T9952 T9951 arg1Of situ,in
R6868 T9953 T9952 arg1Of hybridization,situ
R6869 T9953 T9954 arg1Of hybridization,shows
R6870 T9954 T9949 arg1Of shows,Furthermore
R6871 T9954 T9950 arg1Of shows,","
R6872 T9956 T9957 arg1Of Sox6,is
R6873 T9956 T9959 arg2Of Sox6,transcribed
R6874 T9959 T9954 arg2Of transcribed,shows
R6875 T9959 T9955 arg1Of transcribed,that
R6876 T9959 T9957 arg2Of transcribed,is
R6877 T9959 T9958 arg1Of transcribed,highly
R6878 T9959 T9960 arg1Of transcribed,in
R6879 T9959 T9966 arg1Of transcribed,in
R6880 T9960 T9964 arg1Of in,but
R6881 T9962 T9960 arg2Of liver,in
R6882 T9962 T9961 arg1Of liver,12.5-dpc
R6883 T9964 T9963 arg1Of but,","
R6884 T9966 T9964 arg2Of in,but
R6885 T9966 T9965 arg1Of in,not
R6886 T9970 T9966 arg2Of islands,in
R6887 T9970 T9967 arg1Of islands,yolk
R6888 T9970 T9968 arg1Of islands,sac
R6889 T9970 T9969 arg1Of islands,blood
R6890 T9970 T9971 arg1Of islands,at
R6891 T9973 T9971 arg2Of dpc,at
R6892 T9973 T9972 arg1Of dpc,7.5
R6893 T9973 T9974 arg1Of dpc,(
R6894 T9976 T9974 arg2Of 6B,(
R6895 T9976 T9975 arg1Of 6B,Figure
R6896 T9977 T9974 arg3Of ),(
R6897 T9981 T9980 arg1Of expression,Sox6
R6898 T9981 T9982 arg1Of expression,is
R6899 T9981 T9986 arg1Of expression,coincident
R6900 T9982 T9978 arg1Of is,Therefore
R6901 T9982 T9979 arg1Of is,","
R6902 T9983 T9984 arg1Of temporally,and
R6903 T9985 T9984 arg2Of spatially,and
R6904 T9986 T9982 arg2Of coincident,is
R6905 T9986 T9983 arg1Of coincident,temporally
R6906 T9986 T9985 arg1Of coincident,spatially
R6907 T9986 T9987 arg1Of coincident,with
R6908 T9988 T9990 arg1Of definitive,but
R6909 T9990 T9989 arg1Of but,","
R6910 T9992 T9990 arg2Of primitive,but
R6911 T9992 T9991 arg1Of primitive,not
R6912 T9994 T9987 arg2Of erythropoiesis,with
R6913 T9994 T9988 arg1Of erythropoiesis,definitive
R6914 T9994 T9992 arg1Of erythropoiesis,primitive
R6915 T9994 T9993 arg1Of erythropoiesis,","
R6916 T9996 T9995 arg1Of data,These
R6917 T9996 T9998 arg2Of data,taken
R6918 T9996 T10023 arg1Of data,demonstrate
R6919 T9998 T9997 arg1Of taken,","
R6920 T9998 T9999 arg1Of taken,together
R6921 T9998 T10000 arg1Of taken,with
R6922 T10002 T10000 arg2Of observation,with
R6923 T10002 T10001 arg1Of observation,the
R6924 T10005 T10004 arg1Of globin,ɛy
R6925 T10005 T10006 arg1Of globin,is
R6926 T10005 T10008 arg2Of globin,expressed
R6927 T10008 T10002 arg2Of expressed,observation
R6928 T10008 T10003 arg1Of expressed,that
R6929 T10008 T10006 arg2Of expressed,is
R6930 T10008 T10007 arg1Of expressed,highly
R6931 T10008 T10009 arg1Of expressed,in
R6932 T10012 T10009 arg2Of cells,in
R6933 T10012 T10010 arg1Of cells,the
R6934 T10012 T10011 arg1Of cells,liver
R6935 T10012 T10013 arg1Of cells,of
R6936 T10017 T10013 arg2Of mice,of
R6937 T10017 T10014 arg1Of mice,14.5-dpc
R6938 T10017 T10015 arg1Of mice,p100H
R6939 T10017 T10016 arg1Of mice,mutant
R6940 T10017 T10018 arg1Of mice,(
R6941 T10019 T10018 arg2Of Figure,(
R6942 T10019 T10020 arg1Of Figure,5
R6943 T10021 T10018 arg3Of ),(
R6944 T10023 T10022 arg1Of demonstrate,","
R6945 T10023 T10027 arg1Of demonstrate,in
R6946 T10026 T10023 arg2Of functions,demonstrate
R6947 T10026 T10024 arg1Of functions,that
R6948 T10026 T10025 arg1Of functions,Sox6
R6949 T10029 T10027 arg2Of erythropoiesis,in
R6950 T10029 T10028 arg1Of erythropoiesis,definitive

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T9829 914-918 Protein denotes Sox6
T9828 806-815 Protein denotes ɛy globin
T9827 646-650 Protein denotes Sox6
T9826 531-535 Protein denotes Sox6
T9825 348-352 Protein denotes Sox6
T9824 257-261 Protein denotes Sox6
T9823 136-140 Protein denotes Sox6
T9822 61-70 Protein denotes ɛy globin
T9821 21-25 Protein denotes Sox6

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T10037 914-918 http://www.uniprot.org/uniprot/P35712 denotes Sox6
T10036 646-650 http://www.uniprot.org/uniprot/P35712 denotes Sox6
T10035 531-535 http://www.uniprot.org/uniprot/P35712 denotes Sox6
T10034 348-352 http://www.uniprot.org/uniprot/P35712 denotes Sox6
T10033 257-261 http://www.uniprot.org/uniprot/P35712 denotes Sox6
T10032 136-140 http://www.uniprot.org/uniprot/P35712 denotes Sox6
T10031 21-25 http://www.uniprot.org/uniprot/P35712 denotes Sox6

UBERON-AE

Id Subject Object Predicate Lexical cue
T9781 597-610 http://purl.obolibrary.org/obo/UBERON_0003061 denotes blood islands
T9780 597-602 http://purl.obolibrary.org/obo/UBERON_0000178 denotes blood
T9779 593-596 http://purl.obolibrary.org/obo/UBERON_0009856 denotes sac
T9778 588-610 http://purl.obolibrary.org/obo/UBERON_0011919 denotes yolk sac blood islands
T9777 588-596 http://purl.obolibrary.org/obo/UBERON_0001040 denotes yolk sac
T9776 588-592 http://purl.obolibrary.org/obo/UBERON_2000084 denotes yolk
T9775 843-848 http://purl.obolibrary.org/obo/UBERON_0002107 denotes liver
T9774 570-575 http://purl.obolibrary.org/obo/UBERON_0002107 denotes liver
T9773 478-483 http://purl.obolibrary.org/obo/UBERON_0002107 denotes liver
T9772 74-79 http://purl.obolibrary.org/obo/UBERON_0002107 denotes liver

GO-BP

Id Subject Object Predicate Lexical cue
T9800 726-751 http://purl.obolibrary.org/obo/GO_0060319 denotes primitive, erythropoiesis
T9799 809-815 http://purl.obolibrary.org/obo/GO_0005344 denotes globin
T9798 64-70 http://purl.obolibrary.org/obo/GO_0005344 denotes globin
T9797 943-957 http://purl.obolibrary.org/obo/GO_0030218 denotes erythropoiesis
T9796 737-751 http://purl.obolibrary.org/obo/GO_0030218 denotes erythropoiesis
T9795 456-470 http://purl.obolibrary.org/obo/GO_0030218 denotes erythropoiesis
T9794 181-195 http://purl.obolibrary.org/obo/GO_0030218 denotes erythropoiesis
T9792 932-957 http://purl.obolibrary.org/obo/GO_0060318 denotes definitive erythropoiesis
T9791 445-470 http://purl.obolibrary.org/obo/GO_0060318 denotes definitive erythropoiesis
T9790 170-195 http://purl.obolibrary.org/obo/GO_0060318 denotes definitive erythropoiesis

GO-MF

Id Subject Object Predicate Lexical cue
T9831 809-815 http://purl.obolibrary.org/obo/GO_0005344 denotes globin
T9830 64-70 http://purl.obolibrary.org/obo/GO_0005344 denotes globin

GO-CC

Id Subject Object Predicate Lexical cue
T9834 588-592 http://purl.obolibrary.org/obo/GO_0060417 denotes yolk
T9833 849-854 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T9832 108-113 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T9788 753-958 Sentence denotes These data, taken together with the observation that ɛy globin is highly expressed in the liver cells of 14.5-dpc p100H mutant mice (Figure 5), demonstrate that Sox6 functions in definitive erythropoiesis.
T9787 635-752 Sentence denotes Therefore, Sox6 expression is temporally and spatially coincident with definitive, but not primitive, erythropoiesis.
T9786 485-634 Sentence denotes Furthermore, in situ hybridization shows that Sox6 is highly transcribed in 12.5-dpc liver, but not in yolk sac blood islands at 7.5 dpc (Figure 6B).
T9785 325-484 Sentence denotes As shown in Figure 6A, Sox6 is detectable by Northern blot beginning at 10.5 dpc, coincident with the temporal onset of definitive erythropoiesis in the liver.
T9784 197-324 Sentence denotes To determine the temporal and spatial expression pattern of Sox6, Northern blot and in situ hybridization assays were employed.
T9783 0-196 Sentence denotes The observation that Sox6-deficient mice ectopically express ɛy globin in liver, where definitive erythroid cells mature, suggests that Sox6 is an important regulator in definitive erythropoiesis.
T168 0-196 Sentence denotes The observation that Sox6-deficient mice ectopically express ɛy globin in liver, where definitive erythroid cells mature, suggests that Sox6 is an important regulator in definitive erythropoiesis.
T169 197-324 Sentence denotes To determine the temporal and spatial expression pattern of Sox6, Northern blot and in situ hybridization assays were employed.
T170 325-484 Sentence denotes As shown in Figure 6A, Sox6 is detectable by Northern blot beginning at 10.5 dpc, coincident with the temporal onset of definitive erythropoiesis in the liver.
T171 485-634 Sentence denotes Furthermore, in situ hybridization shows that Sox6 is highly transcribed in 12.5-dpc liver, but not in yolk sac blood islands at 7.5 dpc (Figure 6B).
T172 635-752 Sentence denotes Therefore, Sox6 expression is temporally and spatially coincident with definitive, but not primitive, erythropoiesis.
T173 753-958 Sentence denotes These data, taken together with the observation that ɛy globin is highly expressed in the liver cells of 14.5-dpc p100H mutant mice (Figure 5), demonstrate that Sox6 functions in definitive erythropoiesis.

simple1

Id Subject Object Predicate Lexical cue
T9861 914-918 Protein denotes Sox6
T9860 806-815 Protein denotes ɛy globin
T9859 646-650 Protein denotes Sox6
T9858 531-535 Protein denotes Sox6
T9857 348-352 Protein denotes Sox6
T9856 257-261 Protein denotes Sox6
T9855 136-140 Protein denotes Sox6
T9854 61-70 Protein denotes ɛy globin
T9853 21-25 Protein denotes Sox6

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T10321 826-835 Gene_expression denotes expressed
T10320 651-661 Gene_expression denotes expression
T10319 546-557 Transcription denotes transcribed
T10318 235-245 Gene_expression denotes expression
T10317 53-60 Gene_expression denotes express
T10316 26-35 Negative_regulation denotes deficient
T10314 806-815 Protein denotes ɛy globin
T10313 914-918 Protein denotes Sox6
T10312 646-650 Protein denotes Sox6
T10311 531-535 Protein denotes Sox6
T10310 348-352 Protein denotes Sox6
T10309 257-261 Protein denotes Sox6
T10308 136-140 Protein denotes Sox6
T10307 61-70 Protein denotes ɛy globin
T10306 21-25 Protein denotes Sox6
R7153 T10306 T10316 themeOf Sox6,deficient
R7154 T10307 T10317 themeOf ɛy globin,express
R7155 T10309 T10318 themeOf Sox6,expression
R7156 T10311 T10319 themeOf Sox6,transcribed
R7157 T10312 T10320 themeOf Sox6,expression
R7158 T10314 T10321 themeOf ɛy globin,expressed
R7159 T10317 T10316 themeOf express,deficient

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T10053 826-835 Gene_expression denotes expressed
T10052 651-661 Gene_expression denotes expression
T10051 235-245 Gene_expression denotes expression
T10050 26-35 Negative_regulation denotes deficient
T10049 53-60 Gene_expression denotes express
T10047 806-815 Protein denotes ɛy globin
T10046 914-918 Protein denotes Sox6
T10045 646-650 Protein denotes Sox6
T10044 531-535 Protein denotes Sox6
T10043 348-352 Protein denotes Sox6
T10042 257-261 Protein denotes Sox6
T10041 136-140 Protein denotes Sox6
T10040 61-70 Protein denotes ɛy globin
T10039 21-25 Protein denotes Sox6
R6952 T10039 T10050 themeOf Sox6,deficient
R6953 T10040 T10049 themeOf ɛy globin,express
R6954 T10042 T10051 themeOf Sox6,expression
R6955 T10045 T10052 themeOf Sox6,expression
R6956 T10047 T10053 themeOf ɛy globin,expressed

DLUT931

Id Subject Object Predicate Lexical cue
T10079 826-835 Gene_expression denotes expressed
T10078 651-661 Gene_expression denotes expression
T10077 235-245 Gene_expression denotes expression
T10076 53-60 Gene_expression denotes express
T10075 26-35 Negative_regulation denotes deficient
T10073 806-815 Protein denotes ɛy globin
T10072 914-918 Protein denotes Sox6
T10071 646-650 Protein denotes Sox6
T10070 531-535 Protein denotes Sox6
T10069 348-352 Protein denotes Sox6
T10068 257-261 Protein denotes Sox6
T10067 136-140 Protein denotes Sox6
T10066 61-70 Protein denotes ɛy globin
T10065 21-25 Protein denotes Sox6
R6958 T10065 T10075 themeOf Sox6,deficient
R6959 T10066 T10076 themeOf ɛy globin,express
R6960 T10068 T10077 themeOf Sox6,expression
R6961 T10071 T10078 themeOf Sox6,expression
R6962 T10073 T10079 themeOf ɛy globin,expressed

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T10304 646-661 Gene_expression denotes Sox6 expression
T10303 498-633 Transcription denotes in situ hybridization shows that Sox6 is highly transcribed in 12.5-dpc liver, but not in yolk sac blood islands at 7.5 dpc (Figure 6B)
T10302 646-650 Protein denotes Sox6
T10301 61-70 Protein denotes ɛy globin
T10299 858-895 Protein denotes 14.5-dpc p100H mutant mice (Figure 5)
T10298 348-352 Protein denotes Sox6
T10297 87-113 Entity denotes definitive erythroid cells
T10296 593-596 Protein denotes sac
T10295 801-815 Protein denotes that ɛy globin
T10294 914-918 Protein denotes Sox6
T10293 614-633 Entity denotes 7.5 dpc (Figure 6B)
T10292 531-535 Protein denotes Sox6
T10290 588-592 Entity denotes yolk
T10289 402-483 Entity denotes dpc, coincident with the temporal onset of definitive erythropoiesis in the liver
T10288 257-261 Protein denotes Sox6
T10287 21-40 Protein denotes Sox6-deficient mice
T10286 136-140 Protein denotes Sox6
T10285 839-895 Entity denotes the liver cells of 14.5-dpc p100H mutant mice (Figure 5)
R7150 T10292 T10303 themeOf Sox6,"in situ hybridization shows that Sox6 is highly transcribed in 12.5-dpc liver, but not in yolk sac blood islands at 7.5 dpc (Figure 6B)"
R7151 T10302 T10304 themeOf Sox6,Sox6 expression

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T10267 957-958 . denotes .
T10266 943-957 NNS denotes erythropoiesis
T10265 932-942 JJ denotes definitive
T10264 929-931 IN denotes in
T10263 919-928 NNS denotes functions
T10262 914-918 JJ denotes Sox6
T10261 909-913 IN denotes that
T10260 897-908 VBP denotes demonstrate
T10259 895-896 , denotes ,
T10258 894-895 -RRB- denotes )
T10257 893-894 CD denotes 5
T10256 886-892 NN denotes Figure
T10255 885-886 -LRB- denotes (
T10254 880-884 NNS denotes mice
T10253 873-879 JJ denotes mutant
T10252 867-872 JJ denotes p100H
T10251 858-866 JJ denotes 14.5-dpc
T10250 855-857 IN denotes of
T10249 849-854 NNS denotes cells
T10248 843-848 NN denotes liver
T10247 839-842 DT denotes the
T10246 836-838 IN denotes in
T10245 826-835 VBN denotes expressed
T10244 819-825 RB denotes highly
T10243 816-818 VBZ denotes is
T10242 809-815 NN denotes globin
T10241 806-808 JJ denotes ɛy
T10240 801-805 IN denotes that
T10239 789-800 NN denotes observation
T10238 785-788 DT denotes the
T10237 780-784 IN denotes with
T10236 771-779 RB denotes together
T10235 765-770 VBN denotes taken
T10234 763-764 , denotes ,
T10233 759-763 NNS denotes data
T10232 753-758 DT denotes These
T10231 751-752 . denotes .
T10230 737-751 NNS denotes erythropoiesis
T10229 735-736 , denotes ,
T10228 726-735 JJ denotes primitive
T10227 722-725 RB denotes not
T10226 718-721 CC denotes but
T10225 716-717 , denotes ,
T10224 706-716 JJ denotes definitive
T10223 701-705 IN denotes with
T10222 690-700 JJ denotes coincident
T10221 680-689 RB denotes spatially
T10220 676-679 CC denotes and
T10219 665-675 RB denotes temporally
T10218 662-664 VBZ denotes is
T10217 651-661 NN denotes expression
T10216 646-650 JJ denotes Sox6
T10215 644-645 , denotes ,
T10214 635-644 RB denotes Therefore
T10213 633-634 . denotes .
T10212 632-633 -RRB- denotes )
T10211 630-632 NN denotes 6B
T10210 623-629 NN denotes Figure
T10209 622-623 -LRB- denotes (
T10208 618-621 NN denotes dpc
T10207 614-617 CD denotes 7.5
T10206 611-613 IN denotes at
T10205 603-610 NNS denotes islands
T10204 597-602 NN denotes blood
T10203 593-596 NN denotes sac
T10202 588-592 NN denotes yolk
T10201 585-587 IN denotes in
T10200 581-584 RB denotes not
T10199 577-580 CC denotes but
T10198 575-576 , denotes ,
T10197 570-575 NN denotes liver
T10196 561-569 JJ denotes 12.5-dpc
T10195 558-560 IN denotes in
T10194 546-557 VBN denotes transcribed
T10193 539-545 RB denotes highly
T10192 536-538 VBZ denotes is
T10191 531-535 NNP denotes Sox6
T10190 526-530 IN denotes that
T10189 520-525 VBZ denotes shows
T10188 506-519 NN denotes hybridization
T10187 501-505 NN denotes situ
T10186 498-500 IN denotes in
T10185 496-497 , denotes ,
T10184 485-496 RB denotes Furthermore
T10183 483-484 . denotes .
T10182 478-483 NN denotes liver
T10181 474-477 DT denotes the
T10180 471-473 IN denotes in
T10179 456-470 NNS denotes erythropoiesis
T10178 445-455 JJ denotes definitive
T10177 442-444 IN denotes of
T10176 436-441 NN denotes onset
T10175 427-435 JJ denotes temporal
T10174 423-426 DT denotes the
T10173 418-422 IN denotes with
T10172 407-417 JJ denotes coincident
T10171 405-406 , denotes ,
T10170 402-405 NN denotes dpc
T10169 397-401 CD denotes 10.5
T10168 394-396 IN denotes at
T10167 384-393 NN denotes beginning
T10166 379-383 NN denotes blot
T10165 370-378 NNP denotes Northern
T10164 367-369 IN denotes by
T10163 356-366 JJ denotes detectable
T10162 353-355 VBZ denotes is
T10161 348-352 NNP denotes Sox6
T10160 346-347 , denotes ,
T10159 344-346 CD denotes 6A
T10158 337-343 NN denotes Figure
T10157 334-336 IN denotes in
T10156 328-333 VBN denotes shown
T10155 325-327 IN denotes As
T10154 323-324 . denotes .
T10153 315-323 VBN denotes employed
T10152 310-314 VBD denotes were
T10151 303-309 NNS denotes assays
T10150 289-302 NN denotes hybridization
T10149 284-288 NN denotes situ
T10148 281-283 IN denotes in
T10147 277-280 CC denotes and
T10146 272-276 NN denotes blot
T10145 263-271 NNP denotes Northern
T10144 261-262 , denotes ,
T10143 257-261 NNP denotes Sox6
T10142 254-256 IN denotes of
T10109 36-40 NNS denotes mice
T10108 21-35 JJ denotes Sox6-deficient
T10107 16-20 WDT denotes that
T10106 4-15 NN denotes observation
T10105 0-3 DT denotes The
T10141 246-253 NN denotes pattern
T10140 235-245 NN denotes expression
T10139 227-234 JJ denotes spatial
T10138 223-226 CC denotes and
T10137 214-222 JJ denotes temporal
T10136 210-213 DT denotes the
T10135 200-209 VB denotes determine
T10134 197-199 TO denotes To
T10133 195-196 . denotes .
T10132 181-195 NNS denotes erythropoiesis
T10131 170-180 JJ denotes definitive
T10130 167-169 IN denotes in
T10129 157-166 NN denotes regulator
T10128 147-156 JJ denotes important
T10127 144-146 DT denotes an
T10126 141-143 VBZ denotes is
T10125 136-140 NNP denotes Sox6
T10124 131-135 IN denotes that
T10123 122-130 VBZ denotes suggests
T10122 120-121 , denotes ,
T10121 114-120 VBP denotes mature
T10120 108-113 NNS denotes cells
T10119 98-107 JJ denotes erythroid
T10118 87-97 JJ denotes definitive
T10117 81-86 WRB denotes where
T10116 79-80 , denotes ,
T10115 74-79 NN denotes liver
T10114 71-73 IN denotes in
T10113 64-70 NN denotes globin
T10112 61-63 JJ denotes ɛy
T10111 53-60 VBP denotes express
T10110 41-52 RB denotes ectopically
R6980 T10105 T10106 det The,observation
R6981 T10106 T10123 nsubj observation,suggests
R6982 T10107 T10111 mark that,express
R6983 T10108 T10109 amod Sox6-deficient,mice
R6984 T10109 T10111 nsubj mice,express
R6985 T10110 T10111 advmod ectopically,express
R6986 T10111 T10106 acl express,observation
R6987 T10112 T10113 amod ɛy,globin
R6988 T10113 T10111 dobj globin,express
R6989 T10114 T10113 prep in,globin
R6990 T10115 T10114 pobj liver,in
R6991 T10116 T10115 punct ",",liver
R6992 T10117 T10121 advmod where,mature
R6993 T10118 T10120 amod definitive,cells
R6994 T10119 T10120 amod erythroid,cells
R6995 T10120 T10121 nsubj cells,mature
R6996 T10121 T10115 relcl mature,liver
R6997 T10122 T10123 punct ",",suggests
R6998 T10123 T10123 ROOT suggests,suggests
R6999 T10124 T10126 mark that,is
R7000 T10125 T10126 nsubj Sox6,is
R7001 T10126 T10123 ccomp is,suggests
R7002 T10127 T10129 det an,regulator
R7003 T10128 T10129 amod important,regulator
R7004 T10129 T10126 attr regulator,is
R7005 T10130 T10129 prep in,regulator
R7006 T10131 T10132 amod definitive,erythropoiesis
R7007 T10132 T10130 pobj erythropoiesis,in
R7008 T10133 T10123 punct .,suggests
R7009 T10134 T10135 aux To,determine
R7010 T10135 T10153 advcl determine,employed
R7011 T10136 T10141 det the,pattern
R7012 T10137 T10141 amod temporal,pattern
R7013 T10138 T10137 cc and,temporal
R7014 T10139 T10137 conj spatial,temporal
R7015 T10140 T10141 compound expression,pattern
R7016 T10141 T10135 dobj pattern,determine
R7017 T10142 T10141 prep of,pattern
R7018 T10143 T10142 pobj Sox6,of
R7019 T10144 T10143 punct ",",Sox6
R7020 T10145 T10146 compound Northern,blot
R7021 T10146 T10141 conj blot,pattern
R7022 T10147 T10146 cc and,blot
R7023 T10148 T10146 conj in,blot
R7024 T10149 T10151 compound situ,assays
R7025 T10150 T10151 compound hybridization,assays
R7026 T10151 T10148 pobj assays,in
R7027 T10152 T10153 auxpass were,employed
R7028 T10153 T10153 ROOT employed,employed
R7029 T10154 T10153 punct .,employed
R7030 T10155 T10156 mark As,shown
R7031 T10156 T10162 advcl shown,is
R7032 T10157 T10156 prep in,shown
R7033 T10158 T10157 pobj Figure,in
R7034 T10159 T10158 nummod 6A,Figure
R7035 T10160 T10162 punct ",",is
R7036 T10161 T10162 nsubj Sox6,is
R7037 T10162 T10162 ROOT is,is
R7038 T10163 T10162 acomp detectable,is
R7039 T10164 T10163 prep by,detectable
R7040 T10165 T10166 compound Northern,blot
R7041 T10166 T10164 pobj blot,by
R7042 T10167 T10162 advcl beginning,is
R7043 T10168 T10167 prep at,beginning
R7044 T10169 T10170 nummod 10.5,dpc
R7045 T10170 T10168 pobj dpc,at
R7046 T10171 T10170 punct ",",dpc
R7047 T10172 T10170 amod coincident,dpc
R7048 T10173 T10172 prep with,coincident
R7049 T10174 T10176 det the,onset
R7050 T10175 T10176 amod temporal,onset
R7051 T10176 T10173 pobj onset,with
R7052 T10177 T10176 prep of,onset
R7053 T10178 T10179 amod definitive,erythropoiesis
R7054 T10179 T10177 pobj erythropoiesis,of
R7055 T10180 T10179 prep in,erythropoiesis
R7056 T10181 T10182 det the,liver
R7057 T10182 T10180 pobj liver,in
R7058 T10183 T10162 punct .,is
R7059 T10184 T10189 advmod Furthermore,shows
R7060 T10185 T10189 punct ",",shows
R7061 T10186 T10189 prep in,shows
R7062 T10187 T10188 compound situ,hybridization
R7063 T10188 T10189 compound hybridization,shows
R7064 T10189 T10189 ROOT shows,shows
R7065 T10190 T10194 mark that,transcribed
R7066 T10191 T10194 nsubjpass Sox6,transcribed
R7067 T10192 T10194 auxpass is,transcribed
R7068 T10193 T10194 advmod highly,transcribed
R7069 T10194 T10189 ccomp transcribed,shows
R7070 T10195 T10194 prep in,transcribed
R7071 T10196 T10197 amod 12.5-dpc,liver
R7072 T10197 T10195 pobj liver,in
R7073 T10198 T10194 punct ",",transcribed
R7074 T10199 T10194 cc but,transcribed
R7075 T10200 T10201 neg not,in
R7076 T10201 T10206 prep in,at
R7077 T10202 T10203 compound yolk,sac
R7078 T10203 T10205 compound sac,islands
R7079 T10204 T10205 compound blood,islands
R7080 T10205 T10201 pobj islands,in
R7081 T10206 T10194 conj at,transcribed
R7082 T10207 T10208 nummod 7.5,dpc
R7083 T10208 T10206 pobj dpc,at
R7084 T10209 T10211 punct (,6B
R7085 T10210 T10211 compound Figure,6B
R7086 T10211 T10208 appos 6B,dpc
R7087 T10212 T10211 punct ),6B
R7088 T10213 T10189 punct .,shows
R7089 T10214 T10218 advmod Therefore,is
R7090 T10215 T10218 punct ",",is
R7091 T10216 T10217 amod Sox6,expression
R7092 T10217 T10218 nsubj expression,is
R7093 T10218 T10218 ROOT is,is
R7094 T10219 T10222 advmod temporally,coincident
R7095 T10220 T10219 cc and,temporally
R7096 T10221 T10219 conj spatially,temporally
R7097 T10222 T10218 acomp coincident,is
R7098 T10223 T10222 prep with,coincident
R7099 T10224 T10223 pobj definitive,with
R7100 T10225 T10222 punct ",",coincident
R7101 T10226 T10222 cc but,coincident
R7102 T10227 T10228 neg not,primitive
R7103 T10228 T10222 conj primitive,coincident
R7104 T10229 T10228 punct ",",primitive
R7105 T10230 T10228 conj erythropoiesis,primitive
R7106 T10231 T10218 punct .,is
R7107 T10232 T10233 det These,data
R7108 T10233 T10260 nsubj data,demonstrate
R7109 T10234 T10233 punct ",",data
R7110 T10235 T10233 acl taken,data
R7111 T10236 T10235 advmod together,taken
R7112 T10237 T10235 prep with,taken
R7113 T10238 T10239 det the,observation
R7114 T10239 T10237 pobj observation,with
R7115 T10240 T10245 mark that,expressed
R7116 T10241 T10242 amod ɛy,globin
R7117 T10242 T10245 nsubjpass globin,expressed
R7118 T10243 T10245 auxpass is,expressed
R7119 T10244 T10245 advmod highly,expressed
R7120 T10245 T10239 acl expressed,observation
R7121 T10246 T10245 prep in,expressed
R7122 T10247 T10249 det the,cells
R7123 T10248 T10249 compound liver,cells
R7124 T10249 T10246 pobj cells,in
R7125 T10250 T10249 prep of,cells
R7126 T10251 T10254 amod 14.5-dpc,mice
R7127 T10252 T10254 amod p100H,mice
R7128 T10253 T10254 amod mutant,mice
R7129 T10254 T10250 pobj mice,of
R7130 T10255 T10256 punct (,Figure
R7131 T10256 T10249 appos Figure,cells
R7132 T10257 T10256 nummod 5,Figure
R7133 T10258 T10256 punct ),Figure
R7134 T10259 T10260 punct ",",demonstrate
R7135 T10260 T10260 ROOT demonstrate,demonstrate
R7136 T10261 T10263 mark that,functions
R7137 T10262 T10263 amod Sox6,functions
R7138 T10263 T10260 ccomp functions,demonstrate
R7139 T10264 T10263 prep in,functions
R7140 T10265 T10266 amod definitive,erythropoiesis
R7141 T10266 T10264 pobj erythropoiesis,in
R7142 T10267 T10260 punct .,demonstrate

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T9851 826-835 Gene_expression denotes expressed
T9850 914-918 Protein denotes Sox6
T9849 806-815 Protein denotes ɛy globin
T9848 651-661 Gene_expression denotes expression
T9847 646-650 Protein denotes Sox6
T9846 546-557 Transcription denotes transcribed
T9845 531-535 Protein denotes Sox6
T9844 348-352 Protein denotes Sox6
T9843 235-245 Gene_expression denotes expression
T9842 257-261 Protein denotes Sox6
T9841 53-60 Gene_expression denotes express
T9840 26-35 Negative_regulation denotes deficient
T9839 136-140 Protein denotes Sox6
T9838 64-70 Protein denotes globin
T9837 21-25 Protein denotes Sox6
R6775 T9837 T9840 themeOf Sox6,deficient
R6776 T9838 T9841 themeOf globin,express
R6777 T9842 T9843 themeOf Sox6,expression
R6778 T9845 T9846 themeOf Sox6,transcribed
R6779 T9847 T9848 themeOf Sox6,expression
R6780 T9849 T9851 themeOf ɛy globin,expressed

testone

Id Subject Object Predicate Lexical cue
T9750 826-835 Gene_expression denotes expressed
T9749 651-661 Gene_expression denotes expression
T9748 53-60 Gene_expression denotes express
T9747 26-35 Negative_regulation denotes deficient
T9746 914-918 Protein denotes Sox6
T9745 806-815 Protein denotes ɛy globin
T9744 646-650 Protein denotes Sox6
T9743 531-535 Protein denotes Sox6
T9742 348-352 Protein denotes Sox6
T9741 257-261 Protein denotes Sox6
T9740 136-140 Protein denotes Sox6
T9739 61-70 Protein denotes ɛy globin
T9738 21-25 Protein denotes Sox6
R6760 T9738 T9747 themeOf Sox6,deficient
R6761 T9739 T9748 themeOf ɛy globin,express
R6762 T9744 T9749 themeOf Sox6,expression
R6763 T9745 T9750 themeOf ɛy globin,expressed

test3

Id Subject Object Predicate Lexical cue
T9771 914-918 Protein denotes Sox6
T9770 806-815 Protein denotes ɛy globin
T9769 651-661 Gene_expression denotes expression
T9768 646-650 Protein denotes Sox6
T9767 531-535 Protein denotes Sox6
T9766 348-352 Protein denotes Sox6
T9765 257-261 Protein denotes Sox6
T9764 136-140 Protein denotes Sox6
T9763 61-70 Protein denotes ɛy globin
T9762 21-25 Protein denotes Sox6
T9760 914-918 Protein denotes Sox6
T9759 806-815 Protein denotes ɛy globin
T9758 646-650 Protein denotes Sox6
T9757 531-535 Protein denotes Sox6
T9756 348-352 Protein denotes Sox6
T9755 257-261 Protein denotes Sox6
T9754 136-140 Protein denotes Sox6
T9753 61-70 Protein denotes ɛy globin
T9752 21-25 Protein denotes Sox6
R6764 T9768 T9769 themeOf Sox6,expression