PMC:1359074 / 22509-22705
Annnotations
pmc-enju-pas
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T9900 | 181-195 | NN | denotes | erythropoiesis |
| T9899 | 170-180 | JJ | denotes | definitive |
| T9898 | 167-169 | IN | denotes | in |
| T9897 | 157-166 | NN | denotes | regulator |
| T9896 | 147-156 | JJ | denotes | important |
| T9895 | 144-146 | DT | denotes | an |
| T9894 | 141-143 | VB | denotes | is |
| T9878 | 41-52 | RB | denotes | ectopically |
| T9877 | 36-40 | NN | denotes | mice |
| T9876 | 21-35 | JJ | denotes | Sox6-deficient |
| T9875 | 16-20 | IN | denotes | that |
| T9874 | 4-15 | NN | denotes | observation |
| T9873 | 0-3 | DT | denotes | The |
| T9893 | 136-140 | NN | denotes | Sox6 |
| T9892 | 131-135 | IN | denotes | that |
| T9891 | 122-130 | VB | denotes | suggests |
| T9890 | 120-121 | -COMMA- | denotes | , |
| T9889 | 114-120 | VB | denotes | mature |
| T9888 | 108-113 | NN | denotes | cells |
| T9887 | 98-107 | JJ | denotes | erythroid |
| T9886 | 87-97 | JJ | denotes | definitive |
| T9885 | 81-86 | WRB | denotes | where |
| T9884 | 79-80 | -COMMA- | denotes | , |
| T9883 | 74-79 | NN | denotes | liver |
| T9882 | 71-73 | IN | denotes | in |
| T9881 | 64-70 | NN | denotes | globin |
| T9880 | 61-63 | JJ | denotes | ɛy |
| T9879 | 53-60 | VB | denotes | express |
| R6791 | T9874 | T9873 | arg1Of | observation,The |
| R6792 | T9874 | T9891 | arg1Of | observation,suggests |
| R6793 | T9877 | T9876 | arg1Of | mice,Sox6-deficient |
| R6794 | T9877 | T9879 | arg1Of | mice,express |
| R6795 | T9879 | T9874 | arg2Of | express,observation |
| R6796 | T9879 | T9875 | arg1Of | express,that |
| R6797 | T9879 | T9878 | arg1Of | express,ectopically |
| R6798 | T9879 | T9882 | arg1Of | express,in |
| R6799 | T9881 | T9879 | arg2Of | globin,express |
| R6800 | T9881 | T9880 | arg1Of | globin,ɛy |
| R6801 | T9883 | T9882 | arg2Of | liver,in |
| R6802 | T9883 | T9884 | arg1Of | liver,"," |
| R6803 | T9883 | T9885 | arg1Of | liver,where |
| R6804 | T9888 | T9886 | arg1Of | cells,definitive |
| R6805 | T9888 | T9887 | arg1Of | cells,erythroid |
| R6806 | T9888 | T9889 | arg1Of | cells,mature |
| R6807 | T9889 | T9885 | arg2Of | mature,where |
| R6808 | T9891 | T9890 | arg1Of | suggests,"," |
| R6809 | T9893 | T9894 | arg1Of | Sox6,is |
| R6810 | T9894 | T9891 | arg2Of | is,suggests |
| R6811 | T9894 | T9892 | arg1Of | is,that |
| R6812 | T9897 | T9894 | arg2Of | regulator,is |
| R6813 | T9897 | T9895 | arg1Of | regulator,an |
| R6814 | T9897 | T9896 | arg1Of | regulator,important |
| R6815 | T9897 | T9898 | arg1Of | regulator,in |
| R6816 | T9900 | T9898 | arg2Of | erythropoiesis,in |
| R6817 | T9900 | T9899 | arg1Of | erythropoiesis,definitive |
bionlp-st-ge-2016-test-proteins
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T9823 | 136-140 | Protein | denotes | Sox6 |
| T9822 | 61-70 | Protein | denotes | ɛy globin |
| T9821 | 21-25 | Protein | denotes | Sox6 |
bionlp-st-ge-2016-uniprot
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T10032 | 136-140 | http://www.uniprot.org/uniprot/P35712 | denotes | Sox6 |
| T10031 | 21-25 | http://www.uniprot.org/uniprot/P35712 | denotes | Sox6 |
UBERON-AE
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T9772 | 74-79 | http://purl.obolibrary.org/obo/UBERON_0002107 | denotes | liver |
GO-BP
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T9798 | 64-70 | http://purl.obolibrary.org/obo/GO_0005344 | denotes | globin |
| T9794 | 181-195 | http://purl.obolibrary.org/obo/GO_0030218 | denotes | erythropoiesis |
| T9790 | 170-195 | http://purl.obolibrary.org/obo/GO_0060318 | denotes | definitive erythropoiesis |
GO-MF
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T9830 | 64-70 | http://purl.obolibrary.org/obo/GO_0005344 | denotes | globin |
GO-CC
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T9832 | 108-113 | http://purl.obolibrary.org/obo/GO_0005623 | denotes | cells |
sentences
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T9783 | 0-196 | Sentence | denotes | The observation that Sox6-deficient mice ectopically express ɛy globin in liver, where definitive erythroid cells mature, suggests that Sox6 is an important regulator in definitive erythropoiesis. |
| T168 | 0-196 | Sentence | denotes | The observation that Sox6-deficient mice ectopically express ɛy globin in liver, where definitive erythroid cells mature, suggests that Sox6 is an important regulator in definitive erythropoiesis. |
simple1
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T9855 | 136-140 | Protein | denotes | Sox6 |
| T9854 | 61-70 | Protein | denotes | ɛy globin |
| T9853 | 21-25 | Protein | denotes | Sox6 |
BioNLP16_DUT
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T10317 | 53-60 | Gene_expression | denotes | express |
| T10316 | 26-35 | Negative_regulation | denotes | deficient |
| T10308 | 136-140 | Protein | denotes | Sox6 |
| T10307 | 61-70 | Protein | denotes | ɛy globin |
| T10306 | 21-25 | Protein | denotes | Sox6 |
| R7153 | T10306 | T10316 | themeOf | Sox6,deficient |
| R7154 | T10307 | T10317 | themeOf | ɛy globin,express |
| R7159 | T10317 | T10316 | themeOf | express,deficient |
BioNLP16_Messiy
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T10050 | 26-35 | Negative_regulation | denotes | deficient |
| T10049 | 53-60 | Gene_expression | denotes | express |
| T10041 | 136-140 | Protein | denotes | Sox6 |
| T10040 | 61-70 | Protein | denotes | ɛy globin |
| T10039 | 21-25 | Protein | denotes | Sox6 |
| R6952 | T10039 | T10050 | themeOf | Sox6,deficient |
| R6953 | T10040 | T10049 | themeOf | ɛy globin,express |
DLUT931
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T10076 | 53-60 | Gene_expression | denotes | express |
| T10075 | 26-35 | Negative_regulation | denotes | deficient |
| T10067 | 136-140 | Protein | denotes | Sox6 |
| T10066 | 61-70 | Protein | denotes | ɛy globin |
| T10065 | 21-25 | Protein | denotes | Sox6 |
| R6958 | T10065 | T10075 | themeOf | Sox6,deficient |
| R6959 | T10066 | T10076 | themeOf | ɛy globin,express |
bionlp-st-ge-2016-test-ihmc
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T10301 | 61-70 | Protein | denotes | ɛy globin |
| T10297 | 87-113 | Entity | denotes | definitive erythroid cells |
| T10287 | 21-40 | Protein | denotes | Sox6-deficient mice |
| T10286 | 136-140 | Protein | denotes | Sox6 |
bionlp-st-ge-2016-spacy-parsed
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T10109 | 36-40 | NNS | denotes | mice |
| T10108 | 21-35 | JJ | denotes | Sox6-deficient |
| T10107 | 16-20 | WDT | denotes | that |
| T10106 | 4-15 | NN | denotes | observation |
| T10105 | 0-3 | DT | denotes | The |
| T10133 | 195-196 | . | denotes | . |
| T10132 | 181-195 | NNS | denotes | erythropoiesis |
| T10131 | 170-180 | JJ | denotes | definitive |
| T10130 | 167-169 | IN | denotes | in |
| T10129 | 157-166 | NN | denotes | regulator |
| T10128 | 147-156 | JJ | denotes | important |
| T10127 | 144-146 | DT | denotes | an |
| T10126 | 141-143 | VBZ | denotes | is |
| T10125 | 136-140 | NNP | denotes | Sox6 |
| T10124 | 131-135 | IN | denotes | that |
| T10123 | 122-130 | VBZ | denotes | suggests |
| T10122 | 120-121 | , | denotes | , |
| T10121 | 114-120 | VBP | denotes | mature |
| T10120 | 108-113 | NNS | denotes | cells |
| T10119 | 98-107 | JJ | denotes | erythroid |
| T10118 | 87-97 | JJ | denotes | definitive |
| T10117 | 81-86 | WRB | denotes | where |
| T10116 | 79-80 | , | denotes | , |
| T10115 | 74-79 | NN | denotes | liver |
| T10114 | 71-73 | IN | denotes | in |
| T10113 | 64-70 | NN | denotes | globin |
| T10112 | 61-63 | JJ | denotes | ɛy |
| T10111 | 53-60 | VBP | denotes | express |
| T10110 | 41-52 | RB | denotes | ectopically |
| R6980 | T10105 | T10106 | det | The,observation |
| R6981 | T10106 | T10123 | nsubj | observation,suggests |
| R6982 | T10107 | T10111 | mark | that,express |
| R6983 | T10108 | T10109 | amod | Sox6-deficient,mice |
| R6984 | T10109 | T10111 | nsubj | mice,express |
| R6985 | T10110 | T10111 | advmod | ectopically,express |
| R6986 | T10111 | T10106 | acl | express,observation |
| R6987 | T10112 | T10113 | amod | ɛy,globin |
| R6988 | T10113 | T10111 | dobj | globin,express |
| R6989 | T10114 | T10113 | prep | in,globin |
| R6990 | T10115 | T10114 | pobj | liver,in |
| R6991 | T10116 | T10115 | punct | ",",liver |
| R6992 | T10117 | T10121 | advmod | where,mature |
| R6993 | T10118 | T10120 | amod | definitive,cells |
| R6994 | T10119 | T10120 | amod | erythroid,cells |
| R6995 | T10120 | T10121 | nsubj | cells,mature |
| R6996 | T10121 | T10115 | relcl | mature,liver |
| R6997 | T10122 | T10123 | punct | ",",suggests |
| R6998 | T10123 | T10123 | ROOT | suggests,suggests |
| R6999 | T10124 | T10126 | mark | that,is |
| R7000 | T10125 | T10126 | nsubj | Sox6,is |
| R7001 | T10126 | T10123 | ccomp | is,suggests |
| R7002 | T10127 | T10129 | det | an,regulator |
| R7003 | T10128 | T10129 | amod | important,regulator |
| R7004 | T10129 | T10126 | attr | regulator,is |
| R7005 | T10130 | T10129 | prep | in,regulator |
| R7006 | T10131 | T10132 | amod | definitive,erythropoiesis |
| R7007 | T10132 | T10130 | pobj | erythropoiesis,in |
| R7008 | T10133 | T10123 | punct | .,suggests |
bionlp-st-ge-2016-test-tees
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T9841 | 53-60 | Gene_expression | denotes | express |
| T9840 | 26-35 | Negative_regulation | denotes | deficient |
| T9839 | 136-140 | Protein | denotes | Sox6 |
| T9838 | 64-70 | Protein | denotes | globin |
| T9837 | 21-25 | Protein | denotes | Sox6 |
| R6775 | T9837 | T9840 | themeOf | Sox6,deficient |
| R6776 | T9838 | T9841 | themeOf | globin,express |
testone
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T9748 | 53-60 | Gene_expression | denotes | express |
| T9747 | 26-35 | Negative_regulation | denotes | deficient |
| T9740 | 136-140 | Protein | denotes | Sox6 |
| T9739 | 61-70 | Protein | denotes | ɛy globin |
| T9738 | 21-25 | Protein | denotes | Sox6 |
| R6760 | T9738 | T9747 | themeOf | Sox6,deficient |
| R6761 | T9739 | T9748 | themeOf | ɛy globin,express |
test3
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T9764 | 136-140 | Protein | denotes | Sox6 |
| T9763 | 61-70 | Protein | denotes | ɛy globin |
| T9762 | 21-25 | Protein | denotes | Sox6 |
| T9754 | 136-140 | Protein | denotes | Sox6 |
| T9753 | 61-70 | Protein | denotes | ɛy globin |
| T9752 | 21-25 | Protein | denotes | Sox6 |