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PMC:1359074 / 21331-21436 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T9258 103-104 -RRB- denotes )
T9257 100-103 NN denotes A–D
T9256 98-99 CD denotes 5
T9255 91-97 NN denotes Figure
T9254 90-91 -LRB- denotes (
T9253 82-89 NN denotes mutants
T9252 73-81 JJ denotes 14.5-dpc
T9251 70-72 IN denotes of
T9250 64-69 NN denotes liver
T9249 60-63 DT denotes the
T9248 57-59 IN denotes in
T9247 52-56 VB denotes seen
T9246 49-51 VB denotes is
T9245 38-48 NN denotes expression
T9244 33-37 NN denotes mRNA
T9243 30-32 JJ denotes ɛy
T9242 22-29 JJ denotes ectopic
T9241 13-21 JJ denotes abundant
T9240 11-12 -COMMA- denotes ,
T9239 3-11 NN denotes contrast
T9238 0-2 IN denotes In
R6384 T9239 T9238 arg2Of contrast,In
R6385 T9245 T9241 arg1Of expression,abundant
R6386 T9245 T9242 arg1Of expression,ectopic
R6387 T9245 T9243 arg1Of expression,ɛy
R6388 T9245 T9244 arg1Of expression,mRNA
R6389 T9245 T9246 arg1Of expression,is
R6390 T9245 T9247 arg2Of expression,seen
R6391 T9247 T9238 arg1Of seen,In
R6392 T9247 T9240 arg1Of seen,","
R6393 T9247 T9246 arg2Of seen,is
R6394 T9247 T9248 arg1Of seen,in
R6395 T9250 T9248 arg2Of liver,in
R6396 T9250 T9249 arg1Of liver,the
R6397 T9250 T9251 arg1Of liver,of
R6398 T9253 T9251 arg2Of mutants,of
R6399 T9253 T9252 arg1Of mutants,14.5-dpc
R6400 T9253 T9254 arg1Of mutants,(
R6401 T9257 T9254 arg2Of A–D,(
R6402 T9257 T9255 arg1Of A–D,Figure
R6403 T9257 T9256 arg1Of A–D,5
R6404 T9258 T9254 arg3Of ),(

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T9080 30-32 Protein denotes ɛy

UBERON-AE

Id Subject Object Predicate Lexical cue
T9022 64-69 http://purl.obolibrary.org/obo/UBERON_0002107 denotes liver

sentences

Id Subject Object Predicate Lexical cue
T9028 0-105 Sentence denotes In contrast, abundant ectopic ɛy mRNA expression is seen in the liver of 14.5-dpc mutants (Figure 5 A–D).
T155 0-105 Sentence denotes In contrast, abundant ectopic ɛy mRNA expression is seen in the liver of 14.5-dpc mutants (Figure 5 A–D).

simple1

Id Subject Object Predicate Lexical cue
T9123 30-32 Protein denotes ɛy

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T9708 38-48 Transcription denotes expression
T9694 30-32 Protein denotes ɛy
R6752 T9694 T9708 themeOf ɛy,expression

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T9348 38-48 Transcription denotes expression
T9335 30-32 Protein denotes ɛy
R6478 T9335 T9348 themeOf ɛy,expression

DLUT931

Id Subject Object Predicate Lexical cue
T9394 22-29 Positive_regulation denotes ectopic
T9393 38-48 Transcription denotes expression
T9375 30-32 Protein denotes ɛy
R6495 T9375 T9393 themeOf ɛy,expression
R6506 T9393 T9394 themeOf expression,ectopic

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T9678 0-89 Transcription denotes In contrast, abundant ectopic ɛy mRNA expression is seen in the liver of 14.5-dpc mutants
T9677 0-89 Gene_expression denotes In contrast, abundant ectopic ɛy mRNA expression is seen in the liver of 14.5-dpc mutants
T9664 33-37 Protein denotes mRNA
T9661 91-103 Entity denotes Figure 5 A–D
T9649 13-48 Protein denotes abundant ectopic ɛy mRNA expression
R6738 T9664 T9677 themeOf mRNA,"In contrast, abundant ectopic ɛy mRNA expression is seen in the liver of 14.5-dpc mutants"
R6739 T9664 T9678 themeOf mRNA,"In contrast, abundant ectopic ɛy mRNA expression is seen in the liver of 14.5-dpc mutants"

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T9556 104-105 . denotes .
T9555 103-104 -RRB- denotes )
T9554 102-103 NNP denotes D
T9553 100-101 DT denotes A
T9552 98-99 CD denotes 5
T9551 91-97 NN denotes Figure
T9550 90-91 -LRB- denotes (
T9549 82-89 NNS denotes mutants
T9548 73-81 JJ denotes 14.5-dpc
T9547 70-72 IN denotes of
T9546 64-69 NN denotes liver
T9545 60-63 DT denotes the
T9544 57-59 IN denotes in
T9543 52-56 VBN denotes seen
T9542 49-51 VBZ denotes is
T9541 38-48 NN denotes expression
T9540 33-37 NNP denotes mRNA
T9539 30-32 NN denotes ɛy
T9538 22-29 JJ denotes ectopic
T9537 13-21 JJ denotes abundant
T9536 11-12 , denotes ,
T9535 3-11 NN denotes contrast
T9534 0-2 IN denotes In
R6631 T9534 T9543 prep In,seen
R6632 T9535 T9534 pobj contrast,In
R6633 T9536 T9543 punct ",",seen
R6634 T9537 T9541 amod abundant,expression
R6635 T9538 T9539 amod ectopic,ɛy
R6636 T9539 T9541 compound ɛy,expression
R6637 T9540 T9541 compound mRNA,expression
R6638 T9541 T9543 nsubjpass expression,seen
R6639 T9542 T9543 auxpass is,seen
R6640 T9543 T9543 ROOT seen,seen
R6641 T9544 T9543 prep in,seen
R6642 T9545 T9546 det the,liver
R6643 T9546 T9544 pobj liver,in
R6644 T9547 T9546 prep of,liver
R6645 T9548 T9549 amod 14.5-dpc,mutants
R6646 T9549 T9547 pobj mutants,of
R6647 T9550 T9551 punct (,Figure
R6648 T9551 T9543 dobj Figure,seen
R6649 T9552 T9551 nummod 5,Figure
R6650 T9553 T9551 appos A,Figure
R6651 T9554 T9553 appos D,A
R6652 T9555 T9551 punct ),Figure
R6653 T9556 T9543 punct .,seen

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T9110 38-48 Gene_expression denotes expression
T9109 30-37 Protein denotes ɛy mRNA
R6270 T9109 T9110 themeOf ɛy mRNA,expression

testone

Id Subject Object Predicate Lexical cue
T8980 33-37 Transcription denotes mRNA
T8969 30-32 Protein denotes ɛy

test3

Id Subject Object Predicate Lexical cue
T9013 33-48 Transcription denotes mRNA expression
T9012 30-32 Protein denotes ɛy
T8991 30-32 Protein denotes ɛy
R6240 T9012 T9013 themeOf ɛy,mRNA expression