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PMC:1359074 / 20927-21212 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T9215 283-284 -RRB- denotes )
T9214 282-283 CD denotes 5
T9213 275-281 NN denotes Figure
T9212 274-275 -LRB- denotes (
T9211 260-273 NN denotes hybridization
T9210 255-259 FW denotes situ
T9209 252-254 FW denotes in
T9208 249-251 IN denotes by
T9207 241-248 NN denotes embryos
T9206 235-240 NN denotes mouse
T9205 232-234 IN denotes in
T9204 220-231 NN denotes transcripts
T9203 213-219 NN denotes globin
T9202 210-212 JJ denotes ɛy
T9201 207-209 IN denotes of
T9200 199-206 NN denotes pattern
T9199 191-198 JJ denotes spatial
T9198 187-190 DT denotes the
T9197 178-186 VB denotes examined
T9196 175-177 PRP denotes we
T9195 173-174 -COMMA- denotes ,
T9194 161-173 NN denotes erythrocytes
T9193 150-160 JJ denotes definitive
T9192 147-149 IN denotes in
T9191 140-146 NN denotes globin
T9190 137-139 JJ denotes ɛy
T9189 134-136 IN denotes of
T9188 123-133 NN denotes expression
T9187 115-122 JJ denotes ectopic
T9186 112-114 TO denotes to
T9185 108-111 JJ denotes due
T9184 105-107 VB denotes is
T9183 102-104 CC denotes or
T9182 89-101 NN denotes erythrocytes
T9181 79-88 JJ denotes primitive
T9180 70-78 JJ denotes residual
T9179 67-69 TO denotes to
T9178 63-66 JJ denotes due
T9177 60-62 VB denotes is
T9176 53-59 NN denotes globin
T9175 50-52 JJ denotes ɛy
T9174 47-49 IN denotes of
T9173 36-46 NN denotes expression
T9172 25-35 JJ denotes persistent
T9171 21-24 DT denotes the
T9170 13-20 IN denotes whether
T9169 3-12 VB denotes determine
T9168 0-2 TO denotes To
R6312 T9169 T9168 arg1Of determine,To
R6313 T9173 T9171 arg1Of expression,the
R6314 T9173 T9172 arg1Of expression,persistent
R6315 T9173 T9174 arg1Of expression,of
R6316 T9173 T9177 arg1Of expression,is
R6317 T9173 T9178 arg1Of expression,due
R6318 T9173 T9184 arg1Of expression,is
R6319 T9173 T9185 arg1Of expression,due
R6320 T9176 T9174 arg2Of globin,of
R6321 T9176 T9175 arg1Of globin,ɛy
R6322 T9177 T9183 arg1Of is,or
R6323 T9178 T9177 arg2Of due,is
R6324 T9178 T9179 arg1Of due,to
R6325 T9182 T9179 arg2Of erythrocytes,to
R6326 T9182 T9180 arg1Of erythrocytes,residual
R6327 T9182 T9181 arg1Of erythrocytes,primitive
R6328 T9183 T9169 arg2Of or,determine
R6329 T9183 T9170 arg1Of or,whether
R6330 T9184 T9183 arg2Of is,or
R6331 T9185 T9184 arg2Of due,is
R6332 T9185 T9186 arg1Of due,to
R6333 T9188 T9186 arg2Of expression,to
R6334 T9188 T9187 arg1Of expression,ectopic
R6335 T9188 T9189 arg1Of expression,of
R6336 T9188 T9192 arg1Of expression,in
R6337 T9191 T9189 arg2Of globin,of
R6338 T9191 T9190 arg1Of globin,ɛy
R6339 T9194 T9192 arg2Of erythrocytes,in
R6340 T9194 T9193 arg1Of erythrocytes,definitive
R6341 T9196 T9197 arg1Of we,examined
R6342 T9197 T9168 modOf examined,To
R6343 T9197 T9195 arg1Of examined,","
R6344 T9197 T9205 arg1Of examined,in
R6345 T9197 T9208 arg1Of examined,by
R6346 T9200 T9197 arg2Of pattern,examined
R6347 T9200 T9198 arg1Of pattern,the
R6348 T9200 T9199 arg1Of pattern,spatial
R6349 T9200 T9201 arg1Of pattern,of
R6350 T9204 T9201 arg2Of transcripts,of
R6351 T9204 T9202 arg1Of transcripts,ɛy
R6352 T9204 T9203 arg1Of transcripts,globin
R6353 T9207 T9205 arg2Of embryos,in
R6354 T9207 T9206 arg1Of embryos,mouse
R6355 T9210 T9209 arg1Of situ,in
R6356 T9211 T9208 arg2Of hybridization,by
R6357 T9211 T9210 arg1Of hybridization,situ
R6358 T9211 T9212 arg1Of hybridization,(
R6359 T9213 T9212 arg2Of Figure,(
R6360 T9213 T9214 arg1Of Figure,5
R6361 T9215 T9212 arg3Of ),(

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T9078 210-219 Protein denotes ɛy globin
T9077 137-146 Protein denotes ɛy globin
T9076 50-59 Protein denotes ɛy globin

UBERON-AE

Id Subject Object Predicate Lexical cue
T9020 241-248 http://purl.obolibrary.org/obo/UBERON_0000922 denotes embryos

GO-BP

Id Subject Object Predicate Lexical cue
T9035 213-219 http://purl.obolibrary.org/obo/GO_0005344 denotes globin
T9034 140-146 http://purl.obolibrary.org/obo/GO_0005344 denotes globin
T9033 53-59 http://purl.obolibrary.org/obo/GO_0005344 denotes globin

GO-MF

Id Subject Object Predicate Lexical cue
T9090 213-219 http://purl.obolibrary.org/obo/GO_0005344 denotes globin
T9089 140-146 http://purl.obolibrary.org/obo/GO_0005344 denotes globin
T9088 53-59 http://purl.obolibrary.org/obo/GO_0005344 denotes globin

sentences

Id Subject Object Predicate Lexical cue
T9026 0-285 Sentence denotes To determine whether the persistent expression of ɛy globin is due to residual primitive erythrocytes or is due to ectopic expression of ɛy globin in definitive erythrocytes, we examined the spatial pattern of ɛy globin transcripts in mouse embryos by in situ hybridization (Figure 5).
T153 0-285 Sentence denotes To determine whether the persistent expression of ɛy globin is due to residual primitive erythrocytes or is due to ectopic expression of ɛy globin in definitive erythrocytes, we examined the spatial pattern of ɛy globin transcripts in mouse embryos by in situ hybridization (Figure 5).

simple1

Id Subject Object Predicate Lexical cue
T9121 210-219 Protein denotes ɛy globin
T9120 137-146 Protein denotes ɛy globin
T9119 50-59 Protein denotes ɛy globin

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T9706 36-46 Gene_expression denotes expression
T9705 108-111 Positive_regulation denotes due
T9704 123-133 Gene_expression denotes expression
T9692 210-219 Protein denotes ɛy globin
T9691 137-146 Protein denotes ɛy globin
T9690 50-59 Protein denotes ɛy globin
R6749 T9690 T9706 themeOf ɛy globin,expression
R6750 T9691 T9704 themeOf ɛy globin,expression
R6758 T9704 T9705 themeOf expression,due
R6759 T9706 T9705 themeOf expression,due

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T9332 137-146 Protein denotes ɛy globin
T9331 50-59 Protein denotes ɛy globin
T9346 36-46 Gene_expression denotes expression
T9345 123-133 Gene_expression denotes expression
T9344 108-111 Positive_regulation denotes due
T9333 210-219 Protein denotes ɛy globin
R6475 T9331 T9346 themeOf ɛy globin,expression
R6476 T9332 T9345 themeOf ɛy globin,expression
R6484 T9345 T9344 themeOf expression,due
R6485 T9346 T9344 themeOf expression,due

DLUT931

Id Subject Object Predicate Lexical cue
T9391 220-231 Transcription denotes transcripts
T9390 123-133 Gene_expression denotes expression
T9389 108-111 Positive_regulation denotes due
T9388 63-66 Positive_regulation denotes due
T9387 36-46 Gene_expression denotes expression
T9373 210-219 Protein denotes ɛy globin
T9372 137-146 Protein denotes ɛy globin
T9371 50-59 Protein denotes ɛy globin
R6491 T9371 T9387 themeOf ɛy globin,expression
R6492 T9372 T9390 themeOf ɛy globin,expression
R6493 T9373 T9391 themeOf ɛy globin,transcripts
R6503 T9387 T9388 themeOf expression,due
R6504 T9387 T9389 themeOf expression,due
R6505 T9390 T9389 themeOf expression,due

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T9683 134-173 Localization denotes of ɛy globin in definitive erythrocytes
T9680 115-173 Gene_expression denotes ectopic expression of ɛy globin in definitive erythrocytes
T9679 21-59 Gene_expression denotes the persistent expression of ɛy globin
T9672 134-173 Protein denotes of ɛy globin in definitive erythrocytes
T9670 70-101 Entity denotes residual primitive erythrocytes
T9665 213-219 Entity denotes globin
T9660 210-231 Protein denotes ɛy globin transcripts
T9656 150-173 Entity denotes definitive erythrocytes
T9653 210-231 Protein denotes ɛy globin transcripts
T9650 47-59 Protein denotes of ɛy globin
R6734 T9650 T9679 themeOf of ɛy globin,the persistent expression of ɛy globin
R6736 T9656 T9683 locationOf definitive erythrocytes,of ɛy globin in definitive erythrocytes
R6742 T9672 T9680 themeOf of ɛy globin in definitive erythrocytes,ectopic expression of ɛy globin in definitive erythrocytes
R6743 T9672 T9683 themeOf of ɛy globin in definitive erythrocytes,of ɛy globin in definitive erythrocytes

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T9510 284-285 . denotes .
T9509 283-284 -RRB- denotes )
T9508 282-283 CD denotes 5
T9507 275-281 NN denotes Figure
T9506 274-275 -LRB- denotes (
T9505 260-273 NN denotes hybridization
T9504 255-259 NN denotes situ
T9503 252-254 IN denotes in
T9502 249-251 IN denotes by
T9501 241-248 NNS denotes embryos
T9500 235-240 NN denotes mouse
T9499 232-234 IN denotes in
T9498 220-231 NNS denotes transcripts
T9497 213-219 NN denotes globin
T9496 210-212 JJ denotes ɛy
T9495 207-209 IN denotes of
T9494 199-206 NN denotes pattern
T9493 191-198 JJ denotes spatial
T9492 187-190 DT denotes the
T9491 178-186 VBD denotes examined
T9490 175-177 PRP denotes we
T9489 173-174 , denotes ,
T9488 161-173 NNS denotes erythrocytes
T9487 150-160 JJ denotes definitive
T9486 147-149 IN denotes in
T9485 140-146 NN denotes globin
T9484 137-139 JJ denotes ɛy
T9483 134-136 IN denotes of
T9482 123-133 NN denotes expression
T9481 115-122 JJ denotes ectopic
T9480 112-114 TO denotes to
T9479 108-111 JJ denotes due
T9478 105-107 VBZ denotes is
T9477 102-104 CC denotes or
T9476 89-101 NNS denotes erythrocytes
T9475 79-88 JJ denotes primitive
T9474 70-78 JJ denotes residual
T9473 67-69 TO denotes to
T9472 63-66 JJ denotes due
T9471 60-62 VBZ denotes is
T9470 53-59 NN denotes globin
T9469 50-52 JJ denotes ɛy
T9468 47-49 IN denotes of
T9467 36-46 NN denotes expression
T9466 25-35 JJ denotes persistent
T9465 21-24 DT denotes the
T9464 13-20 IN denotes whether
T9463 3-12 VB denotes determine
T9462 0-2 TO denotes To
R6559 T9462 T9463 aux To,determine
R6560 T9463 T9463 ROOT determine,determine
R6561 T9464 T9471 mark whether,is
R6562 T9465 T9467 det the,expression
R6563 T9466 T9467 amod persistent,expression
R6564 T9467 T9471 nsubj expression,is
R6565 T9468 T9467 prep of,expression
R6566 T9469 T9470 amod ɛy,globin
R6567 T9470 T9468 pobj globin,of
R6568 T9471 T9463 ccomp is,determine
R6569 T9472 T9471 acomp due,is
R6570 T9473 T9472 prep to,due
R6571 T9474 T9476 amod residual,erythrocytes
R6572 T9475 T9476 amod primitive,erythrocytes
R6573 T9476 T9473 pobj erythrocytes,to
R6574 T9477 T9471 cc or,is
R6575 T9478 T9471 conj is,is
R6576 T9479 T9478 acomp due,is
R6577 T9480 T9479 prep to,due
R6578 T9481 T9482 amod ectopic,expression
R6579 T9482 T9480 pobj expression,to
R6580 T9483 T9482 prep of,expression
R6581 T9484 T9485 amod ɛy,globin
R6582 T9485 T9483 pobj globin,of
R6583 T9486 T9479 prep in,due
R6584 T9487 T9488 amod definitive,erythrocytes
R6585 T9488 T9486 pobj erythrocytes,in
R6586 T9489 T9491 punct ",",examined
R6587 T9490 T9491 nsubj we,examined
R6588 T9491 T9478 ccomp examined,is
R6589 T9492 T9494 det the,pattern
R6590 T9493 T9494 amod spatial,pattern
R6591 T9494 T9491 dobj pattern,examined
R6592 T9495 T9494 prep of,pattern
R6593 T9496 T9498 amod ɛy,transcripts
R6594 T9497 T9498 compound globin,transcripts
R6595 T9498 T9495 pobj transcripts,of
R6596 T9499 T9491 prep in,examined
R6597 T9500 T9501 compound mouse,embryos
R6598 T9501 T9499 pobj embryos,in
R6599 T9502 T9491 prep by,examined
R6600 T9503 T9491 prep in,examined
R6601 T9504 T9505 compound situ,hybridization
R6602 T9505 T9503 pobj hybridization,in
R6603 T9506 T9507 punct (,Figure
R6604 T9507 T9491 parataxis Figure,examined
R6605 T9508 T9507 nummod 5,Figure
R6606 T9509 T9507 punct ),Figure
R6607 T9510 T9463 punct .,determine

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T9106 123-133 Gene_expression denotes expression
T9105 63-66 Positive_regulation denotes due
T9104 36-46 Gene_expression denotes expression
T9103 213-231 Protein denotes globin transcripts
T9102 140-146 Protein denotes globin
T9101 50-59 Protein denotes ɛy globin
R6266 T9101 T9104 themeOf ɛy globin,expression
R6267 T9102 T9106 themeOf globin,expression
R6268 T9104 T9105 themeOf expression,due

testone

Id Subject Object Predicate Lexical cue
T8978 36-46 Gene_expression denotes expression
T8967 210-219 Protein denotes ɛy globin
T8966 137-146 Protein denotes ɛy globin
T8965 50-59 Protein denotes ɛy globin
R6229 T8965 T8978 themeOf ɛy globin,expression

test3

Id Subject Object Predicate Lexical cue
T9009 210-219 Protein denotes ɛy globin
T9008 137-146 Protein denotes ɛy globin
T9007 123-133 Gene_expression denotes expression
T9006 108-111 Positive_regulation denotes due
T9005 50-59 Protein denotes ɛy globin
T9004 36-46 Gene_expression denotes expression
T8989 210-219 Protein denotes ɛy globin
T8988 137-146 Protein denotes ɛy globin
T8987 50-59 Protein denotes ɛy globin
R6236 T9004 T9006 themeOf expression,due
R6237 T9005 T9004 themeOf ɛy globin,expression
R6238 T9008 T9007 themeOf ɛy globin,expression