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PMC:1359074 / 19249-19364 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T7879 113-114 -RRB- denotes )
T7878 112-113 CD denotes 4
T7877 105-111 NN denotes Figure
T7876 104-105 -LRB- denotes (
T7875 102-103 -RRB- denotes )
T7874 98-102 NN denotes ChIP
T7873 97-98 -LRB- denotes (
T7872 77-96 NN denotes immunoprecipitation
T7871 67-76 NN denotes chromatin
T7870 61-66 VB denotes using
T7869 56-60 FW denotes vivo
T7868 53-55 FW denotes in
T7867 44-52 NN denotes promoter
T7866 41-43 JJ denotes ɛy
T7865 37-40 DT denotes the
T7864 34-36 TO denotes to
T7863 28-33 VB denotes binds
T7862 23-27 NN denotes Sox6
T7861 15-22 IN denotes whether
T7860 8-14 VB denotes tested
T7859 3-7 RB denotes also
T7858 0-2 PRP denotes We
R5438 T7858 T7860 arg1Of We,tested
R5439 T7860 T7859 arg1Of tested,also
R5441 T7862 T7863 arg1Of Sox6,binds
R5442 T7863 T7860 arg2Of binds,tested
R5443 T7863 T7861 arg1Of binds,whether
R5446 T7863 T7864 arg1Of binds,to
R5447 T7863 T7869 arg1Of binds,vivo
R5450 T7867 T7864 arg2Of promoter,to
R5451 T7867 T7865 arg1Of promoter,the
R5452 T7867 T7866 arg1Of promoter,ɛy
R5453 T7869 T7868 arg1Of vivo,in
R5454 T7870 T7863 arg2Of using,binds
R5455 T7872 T7870 arg2Of immunoprecipitation,using
R5456 T7872 T7871 arg1Of immunoprecipitation,chromatin
R5457 T7872 T7873 arg1Of immunoprecipitation,(
R5458 T7872 T7876 arg1Of immunoprecipitation,(
R5459 T7874 T7873 arg2Of ChIP,(
R5461 T7875 T7873 arg3Of ),(
R5463 T7877 T7876 arg2Of Figure,(
R5464 T7877 T7878 arg1Of Figure,4
R5465 T7879 T7876 arg3Of ),(

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T7267 41-43 Protein denotes ɛy
T7266 23-27 Protein denotes Sox6

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T7985 23-27 http://www.uniprot.org/uniprot/P35712 denotes Sox6

GO-CC

Id Subject Object Predicate Lexical cue
T7304 67-76 http://purl.obolibrary.org/obo/GO_0000785 denotes chromatin

sentences

Id Subject Object Predicate Lexical cue
T7161 0-115 Sentence denotes We also tested whether Sox6 binds to the ɛy promoter in vivo using chromatin immunoprecipitation (ChIP) (Figure 4).
T137 0-115 Sentence denotes We also tested whether Sox6 binds to the ɛy promoter in vivo using chromatin immunoprecipitation (ChIP) (Figure 4).

simple1

Id Subject Object Predicate Lexical cue
T7425 41-43 Protein denotes ɛy
T7424 23-27 Protein denotes Sox6

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T8907 28-33 Binding denotes binds
T8887 41-43 Protein denotes ɛy
T8886 23-27 Protein denotes Sox6
R6216 T8886 T8907 themeOf Sox6,binds
R6217 T8887 T8907 themeOf ɛy,binds

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T8037 28-33 Binding denotes binds
T8018 41-43 Protein denotes ɛy
T8017 23-27 Protein denotes Sox6
R5562 T8017 T8037 themeOf Sox6,binds
R5564 T8018 T8037 themeOf ɛy,binds

DLUT931

Id Subject Object Predicate Lexical cue
T8090 28-33 Binding denotes binds
T8067 41-43 Protein denotes ɛy
T8066 23-27 Protein denotes Sox6
R5580 T8066 T8090 themeOf Sox6,binds
R5582 T8067 T8090 themeOf ɛy,binds

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T8857 0-103 Binding denotes We also tested whether Sox6 binds to the ɛy promoter in vivo using chromatin immunoprecipitation (ChIP)
T8842 67-76 Entity denotes chromatin
T8828 41-43 Protein denotes ɛy
T8801 23-27 Protein denotes Sox6
T8799 34-103 Entity denotes to the ɛy promoter in vivo using chromatin immunoprecipitation (ChIP)
R6194 T8799 T8828 partOf to the ɛy promoter in vivo using chromatin immunoprecipitation (ChIP),ɛy
R6195 T8799 T8857 themeOf to the ɛy promoter in vivo using chromatin immunoprecipitation (ChIP),We also tested whether Sox6 binds to the ɛy promoter in vivo using chromatin immunoprecipitation (ChIP)
R6198 T8801 T8857 themeOf Sox6,We also tested whether Sox6 binds to the ɛy promoter in vivo using chromatin immunoprecipitation (ChIP)

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T8607 114-115 . denotes .
T8606 113-114 -RRB- denotes )
T8605 112-113 CD denotes 4
T8604 105-111 NN denotes Figure
T8603 104-105 -LRB- denotes (
T8602 102-103 -RRB- denotes )
T8601 98-102 NNP denotes ChIP
T8600 97-98 -LRB- denotes (
T8599 77-96 NN denotes immunoprecipitation
T8598 67-76 NN denotes chromatin
T8597 61-66 VBG denotes using
T8596 56-60 NN denotes vivo
T8595 53-55 IN denotes in
T8594 44-52 NN denotes promoter
T8593 41-43 JJ denotes ɛy
T8592 37-40 DT denotes the
T8591 34-36 TO denotes to
T8590 28-33 NNS denotes binds
T8589 23-27 JJ denotes Sox6
T8588 15-22 IN denotes whether
T8587 8-14 VBD denotes tested
T8586 3-7 RB denotes also
T8585 0-2 PRP denotes We
R6141 T8585 T8587 nsubj We,tested
R6142 T8586 T8587 advmod also,tested
R6143 T8587 T8587 ROOT tested,tested
R6145 T8588 T8590 nmod whether,binds
R6146 T8589 T8590 amod Sox6,binds
R6149 T8590 T8587 dobj binds,tested
R6151 T8591 T8590 prep to,binds
R6152 T8592 T8594 det the,promoter
R6153 T8593 T8594 amod ɛy,promoter
R6154 T8594 T8591 pobj promoter,to
R6157 T8595 T8594 prep in,promoter
R6159 T8596 T8595 pobj vivo,in
R6160 T8597 T8590 acl using,binds
R6161 T8598 T8599 compound chromatin,immunoprecipitation
R6162 T8599 T8597 dobj immunoprecipitation,using
R6163 T8600 T8599 punct (,immunoprecipitation
R6164 T8601 T8599 appos ChIP,immunoprecipitation
R6165 T8602 T8599 punct ),immunoprecipitation
R6166 T8603 T8604 punct (,Figure
R6167 T8604 T8590 appos Figure,binds
R6169 T8605 T8604 nummod 4,Figure
R6171 T8606 T8604 punct ),Figure
R6172 T8607 T8587 punct .,tested

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T7390 28-33 Binding denotes binds
T7389 44-52 Entity denotes promoter
T7388 23-27 Protein denotes Sox6
R4999 T7388 T7390 themeOf Sox6,binds
R5000 T7389 T7390 Site promoter,binds

testone

Id Subject Object Predicate Lexical cue
T7054 44-52 Entity denotes promoter
T7053 28-33 Binding denotes binds
T7030 41-43 Protein denotes ɛy
T7029 23-27 Protein denotes Sox6
R4907 T7029 T7053 themeOf Sox6,binds
R4913 T7054 T7053 themeOf promoter,binds
R4914 T7054 T7030 partOf promoter,ɛy

test3

Id Subject Object Predicate Lexical cue
T7130 44-52 Entity denotes promoter
T7129 41-43 Protein denotes ɛy
T7128 28-33 Binding denotes binds
T7127 23-27 Protein denotes Sox6
T7086 41-43 Protein denotes ɛy
T7085 23-27 Protein denotes Sox6
R4931 T7127 T7128 themeOf Sox6,binds
R4932 T7130 T7128 themeOf promoter,binds
R4933 T7130 T7129 partOf promoter,ɛy