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PMC:1359074 / 18-375 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T253 5-12 NNP denotes Epsilon
T254 13-19 NNP denotes Globin
T255 20-30 NN denotes Expression
T256 31-33 IN denotes in
T257 34-44 JJ denotes Definitive
T258 45-59 NN denotes Erythropoiesis
T303 352-354 IN denotes in
T302 347-351 NN denotes role
T301 345-346 DT denotes a
T300 339-344 VB denotes plays
T299 334-338 NN denotes Sox6
T298 329-333 IN denotes that
T297 319-328 VB denotes suggested
T296 314-318 VB denotes have
T295 306-313 NN denotes studies
T294 297-305 NNP denotes Previous
T293 292-296 NNP denotes Sry.
T292 290-291 -COMMA- denotes ,
T291 286-290 NN denotes gene
T290 274-285 VB denotes determining
T289 267-273 NN denotes testis
T288 263-266 DT denotes the
T287 260-262 IN denotes in
T286 250-259 VB denotes described
T285 244-249 RB denotes first
T284 242-243 -COMMA- denotes ,
T283 236-242 NN denotes domain
T282 228-235 NN denotes binding
T281 224-227 NN denotes DNA
T280 222-223 -RRB- denotes )
T279 219-222 NN denotes HMG
T278 218-219 -LRB- denotes (
T277 212-217 NN denotes group
T276 203-211 NN denotes mobility
T275 198-202 JJ denotes high
T274 188-197 VB denotes conserved
T273 184-187 DT denotes the
T272 181-183 IN denotes by
T271 173-180 VB denotes defined
T270 170-172 VB denotes is
T269 165-169 WDT denotes that
T268 158-164 NN denotes family
T267 151-157 NN denotes factor
T266 137-150 NN denotes transcription
T265 133-136 NN denotes Sox
T264 129-132 DT denotes the
T263 126-128 IN denotes of
T262 119-125 NN denotes member
T261 117-118 DT denotes a
T260 114-116 VB denotes is
T259 109-113 NN denotes Sox6
R45 T254 T253 arg1Of Globin,Epsilon
R46 T255 T254 arg1Of Expression,Globin
R47 T255 T256 arg1Of Expression,in
R48 T258 T256 arg2Of Erythropoiesis,in
R49 T258 T257 arg1Of Erythropoiesis,Definitive
R50 T259 T260 arg1Of Sox6,is
R51 T262 T260 arg2Of member,is
R52 T262 T261 arg1Of member,a
R53 T262 T263 arg1Of member,of
R54 T262 T269 arg1Of member,that
R55 T262 T270 arg1Of member,is
R56 T262 T271 arg2Of member,defined
R57 T268 T263 arg2Of family,of
R58 T268 T264 arg1Of family,the
R59 T268 T265 arg1Of family,Sox
R60 T268 T266 arg1Of family,transcription
R61 T268 T267 arg1Of family,factor
R62 T271 T270 arg2Of defined,is
R63 T279 T278 arg2Of HMG,(
R64 T280 T278 arg3Of ),(
R65 T283 T271 arg1Of domain,defined
R66 T283 T272 arg2Of domain,by
R67 T283 T273 arg1Of domain,the
R68 T283 T274 arg2Of domain,conserved
R69 T283 T275 arg1Of domain,high
R70 T283 T276 arg1Of domain,mobility
R71 T283 T277 arg1Of domain,group
R72 T283 T278 arg1Of domain,(
R73 T283 T281 arg1Of domain,DNA
R74 T283 T282 arg1Of domain,binding
R75 T283 T284 arg1Of domain,","
R76 T283 T286 arg2Of domain,described
R77 T286 T285 arg1Of described,first
R78 T286 T287 arg1Of described,in
R79 T289 T287 arg2Of testis,in
R80 T289 T288 arg1Of testis,the
R81 T289 T290 arg1Of testis,determining
R82 T291 T290 arg2Of gene,determining
R83 T291 T296 modOf gene,have
R84 T294 T293 arg1Of Previous,Sry.
R85 T295 T294 arg1Of studies,Previous
R86 T295 T296 arg1Of studies,have
R87 T295 T297 arg1Of studies,suggested
R88 T297 T292 arg1Of suggested,","
R89 T297 T296 arg2Of suggested,have
R90 T299 T300 arg1Of Sox6,plays
R91 T300 T297 arg2Of plays,suggested
R92 T300 T298 arg1Of plays,that
R93 T300 T303 arg1Of plays,in
R94 T302 T300 arg2Of role,plays
R95 T302 T301 arg1Of role,a

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T148 109-113 Protein denotes Sox6
T149 292-295 Protein denotes Sry
T150 334-338 Protein denotes Sox6
T147 5-19 Protein denotes Epsilon Globin

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T474 109-113 http://www.uniprot.org/uniprot/P35712 denotes Sox6
T475 334-338 http://www.uniprot.org/uniprot/P35712 denotes Sox6

UBERON-AE

Id Subject Object Predicate Lexical cue
T86 267-273 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testis

GO-BP

Id Subject Object Predicate Lexical cue
T100 13-19 http://purl.obolibrary.org/obo/GO_0005344 denotes Globin
T104 34-59 http://purl.obolibrary.org/obo/GO_0060318 denotes Definitive Erythropoiesis
T107 45-59 http://purl.obolibrary.org/obo/GO_0030218 denotes Erythropoiesis
T110 137-150 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription

GO-MF

Id Subject Object Predicate Lexical cue
T169 224-235 http://purl.obolibrary.org/obo/GO_0003677 denotes DNA binding
T170 224-242 http://purl.obolibrary.org/obo/GO_0050692 denotes DNA binding domain
T171 228-235 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T165 13-19 http://purl.obolibrary.org/obo/GO_0005344 denotes Globin

sentences

Id Subject Object Predicate Lexical cue
T2 60-98 Sentence denotes Sox6 Silence Epsilon Globin Expression
T3 100-108 Sentence denotes Abstract
T4 109-296 Sentence denotes Sox6 is a member of the Sox transcription factor family that is defined by the conserved high mobility group (HMG) DNA binding domain, first described in the testis determining gene, Sry.

simple1

Id Subject Object Predicate Lexical cue
T232 5-19 Protein denotes Epsilon Globin
T235 334-338 Protein denotes Sox6
T234 292-295 Protein denotes Sry
T233 109-113 Protein denotes Sox6

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T878 109-113 Protein denotes Sox6
T879 292-295 Protein denotes Sry
T880 334-338 Protein denotes Sox6
T877 5-19 Protein denotes Epsilon Globin
T895 20-30 Gene_expression denotes Expression
R585 T877 T895 themeOf Epsilon Globin,Expression

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T486 109-113 Protein denotes Sox6
T487 292-295 Protein denotes Sry
T488 334-338 Protein denotes Sox6
T485 5-19 Protein denotes Epsilon Globin
T503 20-30 Gene_expression denotes Expression
R446 T485 T503 themeOf Epsilon Globin,Expression

DLUT931

Id Subject Object Predicate Lexical cue
T517 109-113 Protein denotes Sox6
T518 292-295 Protein denotes Sry
T519 334-338 Protein denotes Sox6
T516 5-19 Protein denotes Epsilon Globin
T534 20-30 Gene_expression denotes Expression
R462 T516 T534 themeOf Epsilon Globin,Expression

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T875 263-295 Localization denotes the testis determining gene, Sry
T838 133-136 Protein denotes Sox
T844 109-113 Protein denotes Sox6
T846 263-295 Protein denotes the testis determining gene, Sry
T851 129-164 Protein denotes the Sox transcription factor family
T856 334-338 Protein denotes Sox6
T864 263-295 Protein denotes the testis determining gene, Sry
T865 224-295 Entity denotes DNA binding domain, first described in the testis determining gene, Sry
R576 T846 T875 themeOf "the testis determining gene, Sry","the testis determining gene, Sry"

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T576 5-12 NNP denotes Epsilon
T577 13-19 NNP denotes Globin
T578 20-30 NNP denotes Expression
T579 31-33 IN denotes in
T580 34-44 NNP denotes Definitive
T581 45-59 NNP denotes Erythropoiesis
T627 352-354 IN denotes in
T626 347-351 NN denotes role
T625 345-346 DT denotes a
T624 339-344 NNS denotes plays
T623 334-338 JJ denotes Sox6
T622 329-333 IN denotes that
T621 319-328 VBN denotes suggested
T620 314-318 VBP denotes have
T619 306-313 NNS denotes studies
T618 297-305 JJ denotes Previous
T617 295-296 . denotes .
T616 292-295 NNP denotes Sry
T615 290-291 , denotes ,
T614 286-290 NN denotes gene
T613 274-285 VBG denotes determining
T612 267-273 NN denotes testis
T611 263-266 DT denotes the
T610 260-262 IN denotes in
T609 250-259 VBN denotes described
T608 244-249 JJ denotes first
T607 242-243 , denotes ,
T606 236-242 NN denotes domain
T605 228-235 JJ denotes binding
T604 224-227 NNP denotes DNA
T603 222-223 -RRB- denotes )
T602 219-222 NNP denotes HMG
T601 218-219 -LRB- denotes (
T600 212-217 NN denotes group
T599 203-211 NN denotes mobility
T598 198-202 JJ denotes high
T597 188-197 JJ denotes conserved
T596 184-187 DT denotes the
T595 181-183 IN denotes by
T594 173-180 VBN denotes defined
T593 170-172 VBZ denotes is
T592 165-169 WDT denotes that
T591 158-164 NN denotes family
T590 151-157 NN denotes factor
T589 137-150 NN denotes transcription
T588 133-136 NNPS denotes Sox
T587 129-132 DT denotes the
T586 126-128 IN denotes of
T585 119-125 NN denotes member
T584 117-118 DT denotes a
T583 114-116 VBZ denotes is
T582 109-113 NNP denotes Sox6
R272 T576 T578 compound Epsilon,Expression
R273 T577 T578 compound Globin,Expression
R274 T578 T583 nsubj Expression,is
R275 T579 T578 prep in,Expression
R276 T580 T582 compound Definitive,Sox6
R277 T581 T582 compound Erythropoiesis,Sox6
R278 T582 T579 pobj Sox6,in
R279 T583 T583 ROOT is,is
R280 T584 T585 det a,member
R281 T585 T583 attr member,is
R282 T586 T585 prep of,member
R283 T587 T591 det the,family
R284 T588 T591 compound Sox,family
R285 T589 T590 compound transcription,factor
R286 T590 T591 compound factor,family
R287 T591 T586 pobj family,of
R288 T592 T594 nsubjpass that,defined
R289 T593 T594 auxpass is,defined
R290 T594 T585 relcl defined,member
R291 T595 T594 agent by,defined
R292 T596 T600 det the,group
R293 T597 T600 amod conserved,group
R294 T598 T600 amod high,group
R295 T599 T600 compound mobility,group
R296 T600 T595 pobj group,by
R297 T601 T602 punct (,HMG
R298 T602 T600 appos HMG,group
R299 T603 T602 punct ),HMG
R300 T604 T606 compound DNA,domain
R301 T605 T606 amod binding,domain
R302 T606 T600 conj domain,group
R303 T607 T606 punct ",",domain
R304 T608 T609 advmod first,described
R305 T609 T600 acl described,group
R306 T610 T609 prep in,described
R307 T611 T614 det the,gene
R308 T612 T614 amod testis,gene
R309 T613 T614 amod determining,gene
R310 T614 T610 pobj gene,in
R311 T615 T614 punct ",",gene
R312 T616 T614 appos Sry,gene
R313 T617 T583 punct .,is
R314 T618 T619 amod Previous,studies
R315 T619 T621 nsubj studies,suggested
R316 T620 T621 aux have,suggested
R317 T621 T621 ROOT suggested,suggested
R318 T622 T624 mark that,plays
R319 T623 T624 nsubj Sox6,plays
R320 T624 T621 ccomp plays,suggested
R321 T625 T626 det a,role
R322 T626 T624 dobj role,plays
R323 T627 T626 prep in,role

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T199 5-19 Protein denotes Epsilon Globin
T200 20-30 Gene_expression denotes Expression
T208 334-338 Protein denotes Sox6
T207 173-180 Negative_regulation denotes defined
T206 173-180 Negative_regulation denotes defined
T205 236-242 Entity denotes domain
T204 292-295 Protein denotes Sry
T203 133-164 Protein denotes Sox transcription factor family
T202 109-113 Protein denotes Sox6
R26 T199 T200 themeOf Epsilon Globin,Expression
R28 T202 T206 themeOf Sox6,defined
R29 T203 T207 themeOf Sox transcription factor family,defined
R30 T204 T205 partOf Sry,domain
R31 T205 T206 Site domain,defined
R32 T205 T207 Site domain,defined

testone

Id Subject Object Predicate Lexical cue
T22 109-113 Protein denotes Sox6
T21 5-19 Protein denotes Epsilon Globin
T39 20-30 Gene_expression denotes Expression
T23 292-295 Protein denotes Sry
T24 334-338 Protein denotes Sox6
R1 T21 T39 themeOf Epsilon Globin,Expression

test3

Id Subject Object Predicate Lexical cue
T47 109-113 Protein denotes Sox6
T46 5-19 Protein denotes Epsilon Globin
T65 5-19 Protein denotes Epsilon Globin
T66 20-30 Gene_expression denotes Expression
T48 292-295 Protein denotes Sry
T49 334-338 Protein denotes Sox6
T67 109-113 Protein denotes Sox6
T68 292-295 Protein denotes Sry
T69 334-338 Protein denotes Sox6
R9 T65 T66 themeOf Epsilon Globin,Expression