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PMC:1359074 / 179-483 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T323 300-302 JJ denotes ɛy
T322 298-299 -COMMA- denotes ,
T321 293-298 NN denotes p100H
T320 291-292 -COMMA- denotes ,
T319 286-291 NN denotes mouse
T318 271-285 JJ denotes Sox6-deficient
T317 267-270 DT denotes the
T316 264-266 IN denotes In
T315 256-262 NN denotes muscle
T314 252-255 CC denotes and
T313 250-251 -COMMA- denotes ,
T312 241-250 NN denotes cartilage
T311 239-240 -COMMA- denotes ,
T310 233-239 NN denotes system
T309 225-232 JJ denotes nervous
T308 217-224 JJ denotes central
T307 213-216 DT denotes the
T306 210-212 IN denotes of
T305 198-209 NN denotes development
T304 194-197 DT denotes the
T303 191-193 IN denotes in
T302 186-190 NN denotes role
T301 184-185 DT denotes a
T300 178-183 VB denotes plays
T299 173-177 NN denotes Sox6
T298 168-172 IN denotes that
T297 158-167 VB denotes suggested
T296 153-157 VB denotes have
T295 145-152 NN denotes studies
T294 136-144 NNP denotes Previous
T293 131-135 NNP denotes Sry.
T292 129-130 -COMMA- denotes ,
T291 125-129 NN denotes gene
T290 113-124 VB denotes determining
T289 106-112 NN denotes testis
T288 102-105 DT denotes the
T287 99-101 IN denotes in
T286 89-98 VB denotes described
T285 83-88 RB denotes first
T284 81-82 -COMMA- denotes ,
T283 75-81 NN denotes domain
T282 67-74 NN denotes binding
T281 63-66 NN denotes DNA
T280 61-62 -RRB- denotes )
T279 58-61 NN denotes HMG
T278 57-58 -LRB- denotes (
T277 51-56 NN denotes group
T276 42-50 NN denotes mobility
T275 37-41 JJ denotes high
T274 27-36 VB denotes conserved
T273 23-26 DT denotes the
T272 20-22 IN denotes by
T271 12-19 VB denotes defined
T270 9-11 VB denotes is
T269 4-8 WDT denotes that
R62 T271 T270 arg2Of defined,is
R63 T279 T278 arg2Of HMG,(
R64 T280 T278 arg3Of ),(
R65 T283 T271 arg1Of domain,defined
R66 T283 T272 arg2Of domain,by
R67 T283 T273 arg1Of domain,the
R68 T283 T274 arg2Of domain,conserved
R69 T283 T275 arg1Of domain,high
R70 T283 T276 arg1Of domain,mobility
R71 T283 T277 arg1Of domain,group
R72 T283 T278 arg1Of domain,(
R73 T283 T281 arg1Of domain,DNA
R74 T283 T282 arg1Of domain,binding
R75 T283 T284 arg1Of domain,","
R76 T283 T286 arg2Of domain,described
R77 T286 T285 arg1Of described,first
R78 T286 T287 arg1Of described,in
R79 T289 T287 arg2Of testis,in
R80 T289 T288 arg1Of testis,the
R81 T289 T290 arg1Of testis,determining
R82 T291 T290 arg2Of gene,determining
R83 T291 T296 modOf gene,have
R84 T294 T293 arg1Of Previous,Sry.
R85 T295 T294 arg1Of studies,Previous
R86 T295 T296 arg1Of studies,have
R87 T295 T297 arg1Of studies,suggested
R88 T297 T292 arg1Of suggested,","
R89 T297 T296 arg2Of suggested,have
R90 T299 T300 arg1Of Sox6,plays
R91 T300 T297 arg2Of plays,suggested
R92 T300 T298 arg1Of plays,that
R93 T300 T303 arg1Of plays,in
R94 T302 T300 arg2Of role,plays
R95 T302 T301 arg1Of role,a
R96 T305 T306 arg1Of development,of
R97 T305 T311 arg1Of development,","
R98 T310 T306 arg2Of system,of
R99 T310 T307 arg1Of system,the
R100 T310 T308 arg1Of system,central
R101 T310 T309 arg1Of system,nervous
R102 T311 T314 arg1Of ",",and
R103 T312 T311 arg2Of cartilage,","
R104 T314 T303 arg2Of and,in
R105 T314 T304 arg1Of and,the
R106 T314 T313 arg1Of and,","
R107 T315 T314 arg2Of muscle,and
R108 T319 T316 arg2Of mouse,In
R109 T319 T317 arg1Of mouse,the
R110 T319 T318 arg1Of mouse,Sox6-deficient
R111 T319 T320 arg1Of mouse,","
R112 T321 T320 arg2Of p100H,","

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T149 131-134 Protein denotes Sry
T150 173-177 Protein denotes Sox6
T151 271-275 Protein denotes Sox6

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T475 173-177 http://www.uniprot.org/uniprot/P35712 denotes Sox6
T476 271-275 http://www.uniprot.org/uniprot/P35712 denotes Sox6

UBERON-AE

Id Subject Object Predicate Lexical cue
T86 106-112 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testis
T87 217-224 http://purl.obolibrary.org/obo/UBERON_0012131 denotes central
T88 217-239 http://purl.obolibrary.org/obo/UBERON_0001017 denotes central nervous system
T89 225-239 http://purl.obolibrary.org/obo/UBERON_0001016 denotes nervous system

GO-BP

Id Subject Object Predicate Lexical cue
T112 198-239 http://purl.obolibrary.org/obo/GO_0007417 denotes development of the central nervous system
T111 198-209 http://purl.obolibrary.org/obo/GO_0032502 denotes development
T113 198-239 http://purl.obolibrary.org/obo/GO_0021954 denotes development of the central nervous system

GO-MF

Id Subject Object Predicate Lexical cue
T169 63-74 http://purl.obolibrary.org/obo/GO_0003677 denotes DNA binding
T170 63-81 http://purl.obolibrary.org/obo/GO_0050692 denotes DNA binding domain
T171 67-74 http://purl.obolibrary.org/obo/GO_0005488 denotes binding

sentences

Id Subject Object Predicate Lexical cue
T5 136-263 Sentence denotes Previous studies have suggested that Sox6 plays a role in the development of the central nervous system, cartilage, and muscle.

ICD10

Id Subject Object Predicate Lexical cue
T173 225-232 http://purl.bioontology.org/ontology/ICD10/R45.0 denotes nervous

simple1

Id Subject Object Predicate Lexical cue
T236 271-275 Protein denotes Sox6
T235 173-177 Protein denotes Sox6
T234 131-134 Protein denotes Sry

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T879 131-134 Protein denotes Sry
T880 173-177 Protein denotes Sox6
T881 271-275 Protein denotes Sox6
T897 276-285 Negative_regulation denotes deficient
R586 T881 T897 themeOf Sox6,deficient

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T487 131-134 Protein denotes Sry
T488 173-177 Protein denotes Sox6
T489 271-275 Protein denotes Sox6
T505 276-285 Negative_regulation denotes deficient
R447 T489 T505 themeOf Sox6,deficient

DLUT931

Id Subject Object Predicate Lexical cue
T518 131-134 Protein denotes Sry
T519 173-177 Protein denotes Sox6
T520 271-275 Protein denotes Sox6
T536 276-285 Negative_regulation denotes deficient
R463 T520 T536 themeOf Sox6,deficient

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T875 102-134 Localization denotes the testis determining gene, Sry
T846 102-134 Protein denotes the testis determining gene, Sry
T850 293-298 Entity denotes p100H
T856 173-177 Protein denotes Sox6
T864 102-134 Protein denotes the testis determining gene, Sry
T865 63-134 Entity denotes DNA binding domain, first described in the testis determining gene, Sry
R576 T846 T875 themeOf "the testis determining gene, Sry","the testis determining gene, Sry"

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T648 300-302 JJ denotes ɛy
T647 298-299 , denotes ,
T646 293-298 NNP denotes p100H
T645 291-292 , denotes ,
T644 286-291 NN denotes mouse
T643 271-285 JJ denotes Sox6-deficient
T642 267-270 DT denotes the
T641 264-266 IN denotes In
T640 262-263 . denotes .
T639 256-262 NN denotes muscle
T638 252-255 CC denotes and
T637 250-251 , denotes ,
T636 241-250 NN denotes cartilage
T635 239-240 , denotes ,
T634 233-239 NN denotes system
T633 225-232 JJ denotes nervous
T632 217-224 JJ denotes central
T631 213-216 DT denotes the
T630 210-212 IN denotes of
T629 198-209 NN denotes development
T628 194-197 DT denotes the
T627 191-193 IN denotes in
T626 186-190 NN denotes role
T625 184-185 DT denotes a
T624 178-183 NNS denotes plays
T623 173-177 JJ denotes Sox6
T622 168-172 IN denotes that
T621 158-167 VBN denotes suggested
T620 153-157 VBP denotes have
T619 145-152 NNS denotes studies
T618 136-144 JJ denotes Previous
T617 134-135 . denotes .
T616 131-134 NNP denotes Sry
T615 129-130 , denotes ,
T614 125-129 NN denotes gene
T613 113-124 VBG denotes determining
T612 106-112 NN denotes testis
T611 102-105 DT denotes the
T610 99-101 IN denotes in
T609 89-98 VBN denotes described
T608 83-88 JJ denotes first
T607 81-82 , denotes ,
T606 75-81 NN denotes domain
T605 67-74 JJ denotes binding
T604 63-66 NNP denotes DNA
T603 61-62 -RRB- denotes )
T602 58-61 NNP denotes HMG
T601 57-58 -LRB- denotes (
T600 51-56 NN denotes group
T599 42-50 NN denotes mobility
T598 37-41 JJ denotes high
T597 27-36 JJ denotes conserved
T596 23-26 DT denotes the
T595 20-22 IN denotes by
T594 12-19 VBN denotes defined
T593 9-11 VBZ denotes is
T592 4-8 WDT denotes that
R288 T592 T594 nsubjpass that,defined
R289 T593 T594 auxpass is,defined
R291 T595 T594 agent by,defined
R292 T596 T600 det the,group
R293 T597 T600 amod conserved,group
R294 T598 T600 amod high,group
R295 T599 T600 compound mobility,group
R296 T600 T595 pobj group,by
R297 T601 T602 punct (,HMG
R298 T602 T600 appos HMG,group
R299 T603 T602 punct ),HMG
R300 T604 T606 compound DNA,domain
R301 T605 T606 amod binding,domain
R302 T606 T600 conj domain,group
R303 T607 T606 punct ",",domain
R304 T608 T609 advmod first,described
R305 T609 T600 acl described,group
R306 T610 T609 prep in,described
R307 T611 T614 det the,gene
R308 T612 T614 amod testis,gene
R309 T613 T614 amod determining,gene
R310 T614 T610 pobj gene,in
R311 T615 T614 punct ",",gene
R312 T616 T614 appos Sry,gene
R314 T618 T619 amod Previous,studies
R315 T619 T621 nsubj studies,suggested
R316 T620 T621 aux have,suggested
R317 T621 T621 ROOT suggested,suggested
R318 T622 T624 mark that,plays
R319 T623 T624 nsubj Sox6,plays
R320 T624 T621 ccomp plays,suggested
R321 T625 T626 det a,role
R322 T626 T624 dobj role,plays
R323 T627 T626 prep in,role
R324 T628 T629 det the,development
R325 T629 T627 pobj development,in
R326 T630 T629 prep of,development
R327 T631 T634 det the,system
R328 T632 T634 amod central,system
R329 T633 T634 amod nervous,system
R330 T634 T630 pobj system,of
R331 T635 T634 punct ",",system
R332 T636 T634 conj cartilage,system
R333 T637 T636 punct ",",cartilage
R334 T638 T636 cc and,cartilage
R335 T639 T636 conj muscle,cartilage
R336 T640 T621 punct .,suggested
R338 T642 T644 det the,mouse
R339 T643 T644 amod Sox6-deficient,mouse
R340 T644 T641 pobj mouse,In

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T212 276-285 Negative_regulation denotes deficient
T210 293-298 Protein denotes p100H
T209 271-275 Protein denotes Sox6
T208 173-177 Protein denotes Sox6
T207 12-19 Negative_regulation denotes defined
T206 12-19 Negative_regulation denotes defined
T205 75-81 Entity denotes domain
T204 131-134 Protein denotes Sry
R30 T204 T205 partOf Sry,domain
R31 T205 T206 Site domain,defined
R32 T205 T207 Site domain,defined
R33 T209 T212 themeOf Sox6,deficient

testone

Id Subject Object Predicate Lexical cue
T23 131-134 Protein denotes Sry
T24 173-177 Protein denotes Sox6
T25 271-275 Protein denotes Sox6
T40 276-285 Negative_regulation denotes deficient
R2 T25 T40 themeOf Sox6,deficient

test3

Id Subject Object Predicate Lexical cue
T48 131-134 Protein denotes Sry
T49 173-177 Protein denotes Sox6
T50 271-275 Protein denotes Sox6
T68 131-134 Protein denotes Sry
T69 173-177 Protein denotes Sox6
T70 271-275 Protein denotes Sox6