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PMC:1359074 / 13323-13452 JSONTXT

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2_test

Id Subject Object Predicate Lexical cue
16462943-11504872-85760994 126-127 11504872 denotes 5
T36890 126-127 11504872 denotes 5

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T6050 127-128 -RRB- denotes ]
T6049 126-127 CD denotes 5
T6048 125-126 -LRB- denotes [
T6047 116-124 NN denotes promoter
T6046 110-115 NN denotes fgf-3
T6045 106-109 DT denotes the
T6044 103-105 IN denotes on
T6043 101-102 -COMMA- denotes ,
T6042 96-101 NN denotes CtBP2
T6041 94-95 -COMMA- denotes ,
T6040 82-94 NN denotes co-repressor
T6039 72-81 VB denotes expressed
T6038 65-71 RB denotes widely
T6037 63-64 DT denotes a
T6036 58-62 IN denotes with
T6035 49-57 VB denotes interact
T6034 46-48 TO denotes to
T6033 42-45 CC denotes and
T6032 32-41 NN denotes repressor
T6031 30-31 DT denotes a
T6030 27-29 IN denotes as
T6029 23-26 VB denotes act
T6028 20-22 TO denotes to
T6027 14-19 VB denotes shown
T6026 9-13 VB denotes been
T6025 5-8 VB denotes has
T6024 0-4 NN denotes Sox6
R4172 T6024 T6025 arg1Of Sox6,has
R4173 T6024 T6026 arg1Of Sox6,been
R4174 T6024 T6027 arg2Of Sox6,shown
R4175 T6024 T6029 arg1Of Sox6,act
R4176 T6024 T6035 arg1Of Sox6,interact
R4177 T6027 T6025 arg2Of shown,has
R4178 T6027 T6026 arg2Of shown,been
R4179 T6027 T6048 arg1Of shown,[
R4180 T6029 T6028 arg1Of act,to
R4181 T6029 T6030 arg1Of act,as
R4182 T6029 T6033 arg1Of act,and
R4183 T6032 T6030 arg2Of repressor,as
R4184 T6032 T6031 arg1Of repressor,a
R4185 T6033 T6027 arg3Of and,shown
R4186 T6035 T6033 arg2Of interact,and
R4187 T6035 T6034 arg1Of interact,to
R4188 T6035 T6036 arg1Of interact,with
R4189 T6039 T6038 arg1Of expressed,widely
R4190 T6040 T6036 arg2Of co-repressor,with
R4191 T6040 T6037 arg1Of co-repressor,a
R4192 T6040 T6039 arg1Of co-repressor,expressed
R4193 T6040 T6041 arg1Of co-repressor,","
R4194 T6040 T6043 arg1Of co-repressor,","
R4195 T6040 T6044 arg1Of co-repressor,on
R4196 T6042 T6041 arg2Of CtBP2,","
R4197 T6047 T6044 arg2Of promoter,on
R4198 T6047 T6045 arg1Of promoter,the
R4199 T6047 T6046 arg1Of promoter,fgf-3
R4200 T6049 T6048 arg2Of 5,[
R4201 T6050 T6048 arg3Of ],[

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T5677 110-115 Protein denotes fgf-3
T5676 96-101 Protein denotes CtBP2
T5675 0-4 Protein denotes Sox6

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T6216 96-101 http://www.uniprot.org/uniprot/P56545 denotes CtBP2
T6207 0-4 http://www.uniprot.org/uniprot/P35712 denotes Sox6

sentences

Id Subject Object Predicate Lexical cue
T5599 0-129 Sentence denotes Sox6 has been shown to act as a repressor and to interact with a widely expressed co-repressor, CtBP2, on the fgf-3 promoter [5].
T89 0-129 Sentence denotes Sox6 has been shown to act as a repressor and to interact with a widely expressed co-repressor, CtBP2, on the fgf-3 promoter [5].

simple1

Id Subject Object Predicate Lexical cue
T5800 110-115 Protein denotes fgf-3
T5799 96-101 Protein denotes CtBP2
T5798 0-4 Protein denotes Sox6

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T6923 72-81 Gene_expression denotes expressed
T6922 49-57 Binding denotes interact
T6899 110-115 Protein denotes fgf-3
T6898 96-101 Protein denotes CtBP2
T6897 0-4 Protein denotes Sox6
R4872 T6898 T6922 themeOf CtBP2,interact
R4873 T6898 T6923 themeOf CtBP2,expressed
R4874 T6899 T6922 themeOf fgf-3,interact
R4875 T6899 T6923 themeOf fgf-3,expressed

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T6260 72-81 Gene_expression denotes expressed
T6259 49-57 Binding denotes interact
T6238 110-115 Protein denotes fgf-3
T6237 96-101 Protein denotes CtBP2
T6236 0-4 Protein denotes Sox6
R4362 T6236 T6259 themeOf Sox6,interact
R4363 T6236 T6259 themeOf Sox6,interact
R4364 T6237 T6259 themeOf CtBP2,interact
R4365 T6237 T6260 themeOf CtBP2,expressed
R4366 T6238 T6259 themeOf fgf-3,interact
R4367 T6238 T6260 themeOf fgf-3,expressed

DLUT931

Id Subject Object Predicate Lexical cue
T6311 72-81 Gene_expression denotes expressed
T6310 49-57 Binding denotes interact
T6288 110-115 Protein denotes fgf-3
T6287 96-101 Protein denotes CtBP2
T6286 0-4 Protein denotes Sox6
R4391 T6286 T6310 themeOf Sox6,interact
R4392 T6286 T6310 themeOf Sox6,interact
R4393 T6287 T6310 themeOf CtBP2,interact
R4394 T6287 T6310 themeOf CtBP2,interact
R4395 T6288 T6311 themeOf fgf-3,expressed
R4396 T6288 T6310 themeOf fgf-3,interact
R4397 T6288 T6310 themeOf fgf-3,interact

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T6863 0-4 Protein denotes Sox6
T6850 106-128 Entity denotes the fgf-3 promoter [5]
T6840 96-101 Protein denotes CtBP2
T6829 106-128 Protein denotes the fgf-3 promoter [5]
R4858 T6850 T6829 partOf the fgf-3 promoter [5],the fgf-3 promoter [5]

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T6604 128-129 . denotes .
T6603 127-128 NNP denotes ]
T6602 126-127 CD denotes 5
T6601 125-126 NN denotes [
T6600 116-124 NN denotes promoter
T6599 110-115 JJ denotes fgf-3
T6598 106-109 DT denotes the
T6597 103-105 IN denotes on
T6596 101-102 , denotes ,
T6595 96-101 NNP denotes CtBP2
T6594 94-95 , denotes ,
T6593 82-94 NN denotes co-repressor
T6592 72-81 VBN denotes expressed
T6591 65-71 RB denotes widely
T6590 63-64 DT denotes a
T6589 58-62 IN denotes with
T6588 49-57 VB denotes interact
T6587 46-48 TO denotes to
T6586 42-45 CC denotes and
T6585 32-41 NN denotes repressor
T6584 30-31 DT denotes a
T6583 27-29 IN denotes as
T6582 23-26 VB denotes act
T6581 20-22 TO denotes to
T6580 14-19 VBN denotes shown
T6579 9-13 VBN denotes been
T6578 5-8 VBZ denotes has
T6577 0-4 NNP denotes Sox6
R4640 T6577 T6580 nsubjpass Sox6,shown
R4641 T6578 T6580 aux has,shown
R4642 T6579 T6580 auxpass been,shown
R4643 T6580 T6580 ROOT shown,shown
R4644 T6581 T6582 aux to,act
R4645 T6582 T6580 xcomp act,shown
R4646 T6583 T6582 prep as,act
R4647 T6584 T6585 det a,repressor
R4648 T6585 T6583 pobj repressor,as
R4649 T6586 T6582 cc and,act
R4650 T6587 T6588 aux to,interact
R4651 T6588 T6582 conj interact,act
R4652 T6589 T6588 prep with,interact
R4653 T6590 T6593 det a,co-repressor
R4654 T6591 T6592 advmod widely,expressed
R4655 T6592 T6593 amod expressed,co-repressor
R4656 T6593 T6589 pobj co-repressor,with
R4657 T6594 T6593 punct ",",co-repressor
R4658 T6595 T6593 appos CtBP2,co-repressor
R4659 T6596 T6588 punct ",",interact
R4660 T6597 T6588 prep on,interact
R4661 T6598 T6600 det the,promoter
R4662 T6599 T6600 amod fgf-3,promoter
R4663 T6600 T6597 pobj promoter,on
R4664 T6601 T6603 nmod [,]
R4665 T6602 T6601 nummod 5,[
R4666 T6603 T6600 appos ],promoter
R4667 T6604 T6580 punct .,shown

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T5728 72-81 Gene_expression denotes expressed
T5727 49-57 Binding denotes interact
T5726 49-57 Binding denotes interact
T5725 110-128 Protein denotes fgf-3 promoter [5]
T5724 96-101 Protein denotes CtBP2
T5723 0-4 Protein denotes Sox6
R3947 T5723 T5726 themeOf Sox6,interact
R3948 T5723 T5727 themeOf Sox6,interact
R3949 T5724 T5726 themeOf CtBP2,interact
R3950 T5724 T5728 themeOf CtBP2,expressed
R3951 T5725 T5727 themeOf fgf-3 promoter [5],interact

testone

Id Subject Object Predicate Lexical cue
T5510 49-57 Binding denotes interact
T5490 110-115 Protein denotes fgf-3
T5489 96-101 Protein denotes CtBP2
T5488 0-4 Protein denotes Sox6
R3887 T5488 T5510 themeOf Sox6,interact
R3888 T5489 T5510 themeOf CtBP2,interact

test3

Id Subject Object Predicate Lexical cue
T5571 110-115 Protein denotes fgf-3
T5570 96-101 Protein denotes CtBP2
T5569 72-81 Gene_expression denotes expressed
T5568 0-4 Protein denotes Sox6
T5535 110-115 Protein denotes fgf-3
T5534 96-101 Protein denotes CtBP2
T5533 0-4 Protein denotes Sox6
R3903 T5568 T5569 themeOf Sox6,expressed
R3904 T5570 T5568 themeOf CtBP2,Sox6
R3905 T5570 T5569 themeOf CtBP2,expressed