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PMC:1359074 / 127-442 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T315 308-314 NN denotes muscle
T314 304-307 CC denotes and
T313 302-303 -COMMA- denotes ,
T312 293-302 NN denotes cartilage
T311 291-292 -COMMA- denotes ,
T310 285-291 NN denotes system
T309 277-284 JJ denotes nervous
T308 269-276 JJ denotes central
T307 265-268 DT denotes the
T306 262-264 IN denotes of
T305 250-261 NN denotes development
T304 246-249 DT denotes the
T303 243-245 IN denotes in
T302 238-242 NN denotes role
T301 236-237 DT denotes a
T300 230-235 VB denotes plays
T299 225-229 NN denotes Sox6
T298 220-224 IN denotes that
T297 210-219 VB denotes suggested
T296 205-209 VB denotes have
T295 197-204 NN denotes studies
T294 188-196 NNP denotes Previous
T293 183-187 NNP denotes Sry.
T292 181-182 -COMMA- denotes ,
T291 177-181 NN denotes gene
T290 165-176 VB denotes determining
T289 158-164 NN denotes testis
T288 154-157 DT denotes the
T287 151-153 IN denotes in
T286 141-150 VB denotes described
T285 135-140 RB denotes first
T284 133-134 -COMMA- denotes ,
T283 127-133 NN denotes domain
T282 119-126 NN denotes binding
T281 115-118 NN denotes DNA
T280 113-114 -RRB- denotes )
T279 110-113 NN denotes HMG
T278 109-110 -LRB- denotes (
T277 103-108 NN denotes group
T276 94-102 NN denotes mobility
T275 89-93 JJ denotes high
T274 79-88 VB denotes conserved
T273 75-78 DT denotes the
T272 72-74 IN denotes by
T271 64-71 VB denotes defined
T270 61-63 VB denotes is
T269 56-60 WDT denotes that
T268 49-55 NN denotes family
T267 42-48 NN denotes factor
T266 28-41 NN denotes transcription
T265 24-27 NN denotes Sox
T264 20-23 DT denotes the
T263 17-19 IN denotes of
T262 10-16 NN denotes member
T261 8-9 DT denotes a
T260 5-7 VB denotes is
T259 0-4 NN denotes Sox6
R50 T259 T260 arg1Of Sox6,is
R51 T262 T260 arg2Of member,is
R52 T262 T261 arg1Of member,a
R53 T262 T263 arg1Of member,of
R54 T262 T269 arg1Of member,that
R55 T262 T270 arg1Of member,is
R56 T262 T271 arg2Of member,defined
R57 T268 T263 arg2Of family,of
R58 T268 T264 arg1Of family,the
R59 T268 T265 arg1Of family,Sox
R60 T268 T266 arg1Of family,transcription
R61 T268 T267 arg1Of family,factor
R62 T271 T270 arg2Of defined,is
R63 T279 T278 arg2Of HMG,(
R64 T280 T278 arg3Of ),(
R65 T283 T271 arg1Of domain,defined
R66 T283 T272 arg2Of domain,by
R67 T283 T273 arg1Of domain,the
R68 T283 T274 arg2Of domain,conserved
R69 T283 T275 arg1Of domain,high
R70 T283 T276 arg1Of domain,mobility
R71 T283 T277 arg1Of domain,group
R72 T283 T278 arg1Of domain,(
R73 T283 T281 arg1Of domain,DNA
R74 T283 T282 arg1Of domain,binding
R75 T283 T284 arg1Of domain,","
R76 T283 T286 arg2Of domain,described
R77 T286 T285 arg1Of described,first
R78 T286 T287 arg1Of described,in
R79 T289 T287 arg2Of testis,in
R80 T289 T288 arg1Of testis,the
R81 T289 T290 arg1Of testis,determining
R82 T291 T290 arg2Of gene,determining
R83 T291 T296 modOf gene,have
R84 T294 T293 arg1Of Previous,Sry.
R85 T295 T294 arg1Of studies,Previous
R86 T295 T296 arg1Of studies,have
R87 T295 T297 arg1Of studies,suggested
R88 T297 T292 arg1Of suggested,","
R89 T297 T296 arg2Of suggested,have
R90 T299 T300 arg1Of Sox6,plays
R91 T300 T297 arg2Of plays,suggested
R92 T300 T298 arg1Of plays,that
R93 T300 T303 arg1Of plays,in
R94 T302 T300 arg2Of role,plays
R95 T302 T301 arg1Of role,a
R96 T305 T306 arg1Of development,of
R97 T305 T311 arg1Of development,","
R98 T310 T306 arg2Of system,of
R99 T310 T307 arg1Of system,the
R100 T310 T308 arg1Of system,central
R101 T310 T309 arg1Of system,nervous
R102 T311 T314 arg1Of ",",and
R103 T312 T311 arg2Of cartilage,","
R104 T314 T303 arg2Of and,in
R105 T314 T304 arg1Of and,the
R106 T314 T313 arg1Of and,","
R107 T315 T314 arg2Of muscle,and

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T148 0-4 Protein denotes Sox6
T149 183-186 Protein denotes Sry
T150 225-229 Protein denotes Sox6

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T474 0-4 http://www.uniprot.org/uniprot/P35712 denotes Sox6
T475 225-229 http://www.uniprot.org/uniprot/P35712 denotes Sox6

UBERON-AE

Id Subject Object Predicate Lexical cue
T86 158-164 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testis
T87 269-276 http://purl.obolibrary.org/obo/UBERON_0012131 denotes central
T88 269-291 http://purl.obolibrary.org/obo/UBERON_0001017 denotes central nervous system
T89 277-291 http://purl.obolibrary.org/obo/UBERON_0001016 denotes nervous system

GO-BP

Id Subject Object Predicate Lexical cue
T112 250-291 http://purl.obolibrary.org/obo/GO_0007417 denotes development of the central nervous system
T111 250-261 http://purl.obolibrary.org/obo/GO_0032502 denotes development
T110 28-41 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription
T113 250-291 http://purl.obolibrary.org/obo/GO_0021954 denotes development of the central nervous system

GO-MF

Id Subject Object Predicate Lexical cue
T169 115-126 http://purl.obolibrary.org/obo/GO_0003677 denotes DNA binding
T170 115-133 http://purl.obolibrary.org/obo/GO_0050692 denotes DNA binding domain
T171 119-126 http://purl.obolibrary.org/obo/GO_0005488 denotes binding

sentences

Id Subject Object Predicate Lexical cue
T93 0-315 Sentence denotes Sox6 is a member of the Sox transcription factor family that is defined by the conserved high mobility group (HMG) DNA binding domain, first described in the testis determining gene, Sry. Previous studies have suggested that Sox6 plays a role in the development of the central nervous system, cartilage, and muscle.
T4 0-187 Sentence denotes Sox6 is a member of the Sox transcription factor family that is defined by the conserved high mobility group (HMG) DNA binding domain, first described in the testis determining gene, Sry.
T5 188-315 Sentence denotes Previous studies have suggested that Sox6 plays a role in the development of the central nervous system, cartilage, and muscle.

ICD10

Id Subject Object Predicate Lexical cue
T173 277-284 http://purl.bioontology.org/ontology/ICD10/R45.0 denotes nervous

simple1

Id Subject Object Predicate Lexical cue
T235 225-229 Protein denotes Sox6
T234 183-186 Protein denotes Sry
T233 0-4 Protein denotes Sox6

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T878 0-4 Protein denotes Sox6
T879 183-186 Protein denotes Sry
T880 225-229 Protein denotes Sox6

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T486 0-4 Protein denotes Sox6
T487 183-186 Protein denotes Sry
T488 225-229 Protein denotes Sox6

DLUT931

Id Subject Object Predicate Lexical cue
T517 0-4 Protein denotes Sox6
T518 183-186 Protein denotes Sry
T519 225-229 Protein denotes Sox6

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T875 154-186 Localization denotes the testis determining gene, Sry
T838 24-27 Protein denotes Sox
T844 0-4 Protein denotes Sox6
T846 154-186 Protein denotes the testis determining gene, Sry
T851 20-55 Protein denotes the Sox transcription factor family
T856 225-229 Protein denotes Sox6
T864 154-186 Protein denotes the testis determining gene, Sry
T865 115-186 Entity denotes DNA binding domain, first described in the testis determining gene, Sry
R576 T846 T875 themeOf "the testis determining gene, Sry","the testis determining gene, Sry"

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T640 314-315 . denotes .
T639 308-314 NN denotes muscle
T638 304-307 CC denotes and
T637 302-303 , denotes ,
T636 293-302 NN denotes cartilage
T635 291-292 , denotes ,
T634 285-291 NN denotes system
T633 277-284 JJ denotes nervous
T632 269-276 JJ denotes central
T631 265-268 DT denotes the
T630 262-264 IN denotes of
T629 250-261 NN denotes development
T628 246-249 DT denotes the
T627 243-245 IN denotes in
T626 238-242 NN denotes role
T625 236-237 DT denotes a
T624 230-235 NNS denotes plays
T623 225-229 JJ denotes Sox6
T622 220-224 IN denotes that
T621 210-219 VBN denotes suggested
T620 205-209 VBP denotes have
T619 197-204 NNS denotes studies
T618 188-196 JJ denotes Previous
T617 186-187 . denotes .
T616 183-186 NNP denotes Sry
T615 181-182 , denotes ,
T614 177-181 NN denotes gene
T613 165-176 VBG denotes determining
T612 158-164 NN denotes testis
T611 154-157 DT denotes the
T610 151-153 IN denotes in
T609 141-150 VBN denotes described
T608 135-140 JJ denotes first
T607 133-134 , denotes ,
T606 127-133 NN denotes domain
T605 119-126 JJ denotes binding
T604 115-118 NNP denotes DNA
T603 113-114 -RRB- denotes )
T602 110-113 NNP denotes HMG
T601 109-110 -LRB- denotes (
T600 103-108 NN denotes group
T599 94-102 NN denotes mobility
T598 89-93 JJ denotes high
T597 79-88 JJ denotes conserved
T596 75-78 DT denotes the
T595 72-74 IN denotes by
T594 64-71 VBN denotes defined
T593 61-63 VBZ denotes is
T592 56-60 WDT denotes that
T591 49-55 NN denotes family
T590 42-48 NN denotes factor
T589 28-41 NN denotes transcription
T588 24-27 NNPS denotes Sox
T587 20-23 DT denotes the
T586 17-19 IN denotes of
T585 10-16 NN denotes member
T584 8-9 DT denotes a
T583 5-7 VBZ denotes is
T582 0-4 NNP denotes Sox6
R279 T583 T583 ROOT is,is
R280 T584 T585 det a,member
R281 T585 T583 attr member,is
R282 T586 T585 prep of,member
R283 T587 T591 det the,family
R284 T588 T591 compound Sox,family
R285 T589 T590 compound transcription,factor
R286 T590 T591 compound factor,family
R287 T591 T586 pobj family,of
R288 T592 T594 nsubjpass that,defined
R289 T593 T594 auxpass is,defined
R290 T594 T585 relcl defined,member
R291 T595 T594 agent by,defined
R292 T596 T600 det the,group
R293 T597 T600 amod conserved,group
R294 T598 T600 amod high,group
R295 T599 T600 compound mobility,group
R296 T600 T595 pobj group,by
R297 T601 T602 punct (,HMG
R298 T602 T600 appos HMG,group
R299 T603 T602 punct ),HMG
R300 T604 T606 compound DNA,domain
R301 T605 T606 amod binding,domain
R302 T606 T600 conj domain,group
R303 T607 T606 punct ",",domain
R304 T608 T609 advmod first,described
R305 T609 T600 acl described,group
R306 T610 T609 prep in,described
R307 T611 T614 det the,gene
R308 T612 T614 amod testis,gene
R309 T613 T614 amod determining,gene
R310 T614 T610 pobj gene,in
R311 T615 T614 punct ",",gene
R312 T616 T614 appos Sry,gene
R313 T617 T583 punct .,is
R314 T618 T619 amod Previous,studies
R315 T619 T621 nsubj studies,suggested
R316 T620 T621 aux have,suggested
R317 T621 T621 ROOT suggested,suggested
R318 T622 T624 mark that,plays
R319 T623 T624 nsubj Sox6,plays
R320 T624 T621 ccomp plays,suggested
R321 T625 T626 det a,role
R322 T626 T624 dobj role,plays
R323 T627 T626 prep in,role
R324 T628 T629 det the,development
R325 T629 T627 pobj development,in
R326 T630 T629 prep of,development
R327 T631 T634 det the,system
R328 T632 T634 amod central,system
R329 T633 T634 amod nervous,system
R330 T634 T630 pobj system,of
R331 T635 T634 punct ",",system
R332 T636 T634 conj cartilage,system
R333 T637 T636 punct ",",cartilage
R334 T638 T636 cc and,cartilage
R335 T639 T636 conj muscle,cartilage
R336 T640 T621 punct .,suggested

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T208 225-229 Protein denotes Sox6
T207 64-71 Negative_regulation denotes defined
T206 64-71 Negative_regulation denotes defined
T205 127-133 Entity denotes domain
T204 183-186 Protein denotes Sry
T203 24-55 Protein denotes Sox transcription factor family
T202 0-4 Protein denotes Sox6
R28 T202 T206 themeOf Sox6,defined
R29 T203 T207 themeOf Sox transcription factor family,defined
R30 T204 T205 partOf Sry,domain
R31 T205 T206 Site domain,defined
R32 T205 T207 Site domain,defined

testone

Id Subject Object Predicate Lexical cue
T22 0-4 Protein denotes Sox6
T23 183-186 Protein denotes Sry
T24 225-229 Protein denotes Sox6

test3

Id Subject Object Predicate Lexical cue
T47 0-4 Protein denotes Sox6
T48 183-186 Protein denotes Sry
T49 225-229 Protein denotes Sox6
T67 0-4 Protein denotes Sox6
T68 183-186 Protein denotes Sry
T69 225-229 Protein denotes Sox6