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PMC:1359074 / 11681-11849 JSONTXT

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2_test

Id Subject Object Predicate Lexical cue
16462943-12677004-85760993 83-85 12677004 denotes 32
T50696 83-85 12677004 denotes 32

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T6008 166-167 -RRB- denotes )
T6007 164-166 NN denotes 2B
T6006 157-163 NN denotes Figure
T6005 156-157 -LRB- denotes (
T6004 147-155 NN denotes activity
T6003 141-146 NN denotes E-Luc
T6002 133-140 VB denotes repress
T6001 130-132 TO denotes to
T6000 124-129 VB denotes fails
T5999 122-123 -RRB- denotes )
T5998 116-122 NN denotes allele
T5997 110-115 NN denotes mouse
T5996 103-109 NN denotes p 100H
T5995 99-102 DT denotes the
T5994 96-98 TO denotes to
T5993 88-95 JJ denotes similar
T5992 87-88 -LRB- denotes (
T5991 85-86 -RRB- denotes ]
T5990 83-85 CD denotes 32
T5989 82-83 -LRB- denotes [
T5988 75-81 NN denotes domain
T5987 71-74 NN denotes HMG
T5986 67-70 PRP-DOLLAR- denotes its
T5985 61-66 VB denotes lacks
T5984 56-60 WDT denotes that
T5983 48-55 NN denotes protein
T5982 43-47 NN denotes Sox6
T5981 33-42 VB denotes truncated
T5980 31-32 DT denotes a
T5979 28-30 IN denotes of
T5978 13-27 NN denotes overexpression
T5977 11-12 -COMMA- denotes ,
T5976 3-11 NN denotes contrast
T5975 0-2 IN denotes In
R4123 T5976 T5975 arg2Of contrast,In
R4124 T5978 T5979 arg1Of overexpression,of
R4125 T5978 T6000 arg1Of overexpression,fails
R4126 T5978 T6002 arg1Of overexpression,repress
R4127 T5983 T5979 arg2Of protein,of
R4128 T5983 T5980 arg1Of protein,a
R4129 T5983 T5981 arg2Of protein,truncated
R4130 T5983 T5982 arg1Of protein,Sox6
R4131 T5983 T5984 arg1Of protein,that
R4132 T5983 T5985 arg1Of protein,lacks
R4133 T5983 T5992 arg1Of protein,(
R4134 T5985 T5989 arg1Of lacks,[
R4135 T5988 T5985 arg2Of domain,lacks
R4136 T5988 T5986 arg1Of domain,its
R4137 T5988 T5987 arg1Of domain,HMG
R4138 T5990 T5989 arg2Of 32,[
R4139 T5991 T5989 arg3Of ],[
R4140 T5993 T5992 arg2Of similar,(
R4141 T5993 T5994 arg1Of similar,to
R4142 T5998 T5994 arg2Of allele,to
R4143 T5998 T5995 arg1Of allele,the
R4144 T5998 T5996 arg1Of allele,p 100H
R4145 T5998 T5997 arg1Of allele,mouse
R4146 T5999 T5992 arg3Of ),(
R4147 T6000 T5975 arg1Of fails,In
R4148 T6000 T5977 arg1Of fails,","
R4149 T6002 T6000 arg2Of repress,fails
R4150 T6002 T6001 arg1Of repress,to
R4151 T6004 T6002 arg2Of activity,repress
R4152 T6004 T6003 arg1Of activity,E-Luc
R4153 T6004 T6005 arg1Of activity,(
R4154 T6007 T6005 arg2Of 2B,(
R4155 T6007 T6006 arg1Of 2B,Figure
R4156 T6008 T6005 arg3Of ),(

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T5672 43-47 Protein denotes Sox6

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T6205 43-47 http://www.uniprot.org/uniprot/P35712 denotes Sox6

sentences

Id Subject Object Predicate Lexical cue
T5597 0-168 Sentence denotes In contrast, overexpression of a truncated Sox6 protein that lacks its HMG domain [32] (similar to the p 100H mouse allele) fails to repress E-Luc activity (Figure 2B).
T77 0-168 Sentence denotes In contrast, overexpression of a truncated Sox6 protein that lacks its HMG domain [32] (similar to the p 100H mouse allele) fails to repress E-Luc activity (Figure 2B).

simple1

Id Subject Object Predicate Lexical cue
T5795 43-47 Protein denotes Sox6

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T6920 13-27 Gene_expression denotes overexpression
T6919 13-27 Positive_regulation denotes overexpression
T6894 43-47 Protein denotes Sox6
R4869 T6894 T6920 themeOf Sox6,overexpression
R4888 T6920 T6919 themeOf overexpression,overexpression

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T6257 13-27 Positive_regulation denotes overexpression
T6233 43-47 Protein denotes Sox6
R4359 T6233 T6257 themeOf Sox6,overexpression

DLUT931

Id Subject Object Predicate Lexical cue
T6308 13-27 Positive_regulation denotes overexpression
T6283 43-47 Protein denotes Sox6
R4388 T6283 T6308 themeOf Sox6,overexpression

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T6872 67-86 Entity denotes its HMG domain [32]
T6858 3-55 Protein denotes contrast, overexpression of a truncated Sox6 protein
T6845 96-122 Protein denotes to the p 100H mouse allele
T6817 43-47 Protein denotes Sox6

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T6560 167-168 . denotes .
T6559 166-167 -RRB- denotes )
T6558 164-166 NN denotes 2B
T6557 157-163 NN denotes Figure
T6556 156-157 -LRB- denotes (
T6555 147-155 NN denotes activity
T6554 141-146 JJ denotes E-Luc
T6553 133-140 VB denotes repress
T6552 130-132 TO denotes to
T6551 124-129 VBZ denotes fails
T6550 122-123 -RRB- denotes )
T6549 116-122 NN denotes allele
T6548 110-115 NN denotes mouse
T6547 103-109 JJ denotes p 100H
T6546 99-102 DT denotes the
T6545 96-98 TO denotes to
T6544 88-95 JJ denotes similar
T6543 87-88 -LRB- denotes (
T6542 85-86 NNP denotes ]
T6541 83-85 CD denotes 32
T6540 82-83 NNP denotes [
T6539 75-81 NN denotes domain
T6538 71-74 NNP denotes HMG
T6537 67-70 PRP$ denotes its
T6536 61-66 VBZ denotes lacks
T6535 56-60 WDT denotes that
T6534 48-55 NN denotes protein
T6533 43-47 NNP denotes Sox6
T6532 33-42 VBN denotes truncated
T6531 31-32 DT denotes a
T6530 28-30 IN denotes of
T6529 13-27 NN denotes overexpression
T6528 11-12 , denotes ,
T6527 3-11 NN denotes contrast
T6526 0-2 IN denotes In
R4589 T6526 T6551 prep In,fails
R4590 T6527 T6526 pobj contrast,In
R4591 T6528 T6551 punct ",",fails
R4592 T6529 T6551 nsubj overexpression,fails
R4593 T6530 T6529 prep of,overexpression
R4594 T6531 T6534 det a,protein
R4595 T6532 T6534 amod truncated,protein
R4596 T6533 T6534 compound Sox6,protein
R4597 T6534 T6530 pobj protein,of
R4598 T6535 T6536 nsubj that,lacks
R4599 T6536 T6534 relcl lacks,protein
R4600 T6537 T6539 poss its,domain
R4601 T6538 T6539 compound HMG,domain
R4602 T6539 T6536 dobj domain,lacks
R4603 T6540 T6542 nmod [,]
R4604 T6541 T6542 nummod 32,]
R4605 T6542 T6539 appos ],domain
R4606 T6543 T6542 punct (,]
R4607 T6544 T6542 amod similar,]
R4608 T6545 T6544 prep to,similar
R4609 T6546 T6549 det the,allele
R4610 T6547 T6549 amod p 100H,allele
R4611 T6548 T6549 compound mouse,allele
R4612 T6549 T6545 pobj allele,to
R4613 T6550 T6542 punct ),]
R4614 T6551 T6551 ROOT fails,fails
R4615 T6552 T6553 aux to,repress
R4616 T6553 T6551 xcomp repress,fails
R4617 T6554 T6555 amod E-Luc,activity
R4618 T6555 T6553 dobj activity,repress
R4619 T6556 T6558 punct (,2B
R4620 T6557 T6558 compound Figure,2B
R4621 T6558 T6555 appos 2B,activity
R4622 T6559 T6558 punct ),2B
R4623 T6560 T6551 punct .,fails

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T5721 75-81 Entity denotes domain
T5720 13-27 Positive_regulation denotes overexpression
T5719 13-27 Gene_expression denotes overexpression
T5718 143-146 Protein denotes Luc
T5717 103-122 Protein denotes p 100H mouse allele
T5716 71-74 Protein denotes HMG
T5715 43-47 Protein denotes Sox6
R3944 T5715 T5719 themeOf Sox6,overexpression
R3945 T5716 T5721 partOf HMG,domain
R3946 T5719 T5720 themeOf overexpression,overexpression

testone

Id Subject Object Predicate Lexical cue
T5485 43-47 Protein denotes Sox6

test3

Id Subject Object Predicate Lexical cue
T5564 43-47 Protein denotes Sox6
T5530 43-47 Protein denotes Sox6