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PMC:1359074 / 1096-1277 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T448 177-181 RB denotes Thus
T447 165-175 NN denotes maturation
T446 160-164 NN denotes cell
T445 150-159 JJ denotes erythroid
T444 147-149 IN denotes in
T443 142-146 NN denotes Sox6
T442 138-141 IN denotes for
T441 133-137 NN denotes role
T440 131-132 DT denotes a
T439 122-130 VB denotes suggests
T438 118-121 CC denotes and
T437 103-117 NN denotes erythropoiesis
T436 92-102 JJ denotes definitive
T435 89-91 IN denotes in
T434 82-88 NN denotes globin
T433 79-81 JJ denotes ɛy
T429 53-61 VB denotes required
T428 50-52 VB denotes is
T427 45-49 NN denotes Sox6
T426 40-44 IN denotes that
T425 34-39 VB denotes shows
T424 28-33 NN denotes study
T423 20-27 JJ denotes present
T422 16-19 DT denotes The
T421 0-14 NN denotes erythropoiesis
T431 66-75 NN denotes silencing
T430 62-65 IN denotes for
T432 76-78 IN denotes of
R213 T424 T422 arg1Of study,The
R214 T424 T423 arg1Of study,present
R215 T424 T425 arg1Of study,shows
R216 T427 T428 arg1Of Sox6,is
R217 T427 T429 arg2Of Sox6,required
R218 T427 T439 arg1Of Sox6,suggests
R219 T429 T428 arg2Of required,is
R220 T429 T430 arg1Of required,for
R221 T429 T438 arg1Of required,and
R222 T431 T430 arg2Of silencing,for
R223 T431 T432 arg1Of silencing,of
R224 T431 T435 arg1Of silencing,in
R225 T434 T432 arg2Of globin,of
R226 T434 T433 arg1Of globin,ɛy
R227 T437 T435 arg2Of erythropoiesis,in
R228 T437 T436 arg1Of erythropoiesis,definitive
R229 T438 T425 arg2Of and,shows
R230 T438 T426 arg1Of and,that
R231 T439 T438 arg2Of suggests,and
R232 T441 T439 arg2Of role,suggests
R233 T441 T440 arg1Of role,a
R234 T441 T442 arg1Of role,for
R235 T441 T444 arg1Of role,in
R236 T443 T442 arg2Of Sox6,for
R237 T447 T444 arg2Of maturation,in
R238 T447 T445 arg1Of maturation,erythroid
R239 T447 T446 arg1Of maturation,cell

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T160 45-49 Protein denotes Sox6
T161 79-88 Protein denotes ɛy globin
T162 142-146 Protein denotes Sox6

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T481 45-49 http://www.uniprot.org/uniprot/P35712 denotes Sox6
T482 142-146 http://www.uniprot.org/uniprot/P35712 denotes Sox6

GO-BP

Id Subject Object Predicate Lexical cue
T109 103-117 http://purl.obolibrary.org/obo/GO_0030218 denotes erythropoiesis
T108 0-14 http://purl.obolibrary.org/obo/GO_0030218 denotes erythropoiesis
T106 92-117 http://purl.obolibrary.org/obo/GO_0060318 denotes definitive erythropoiesis
T102 82-88 http://purl.obolibrary.org/obo/GO_0005344 denotes globin
T114 160-175 http://purl.obolibrary.org/obo/GO_0048469 denotes cell maturation

GO-MF

Id Subject Object Predicate Lexical cue
T167 82-88 http://purl.obolibrary.org/obo/GO_0005344 denotes globin

GO-CC

Id Subject Object Predicate Lexical cue
T176 160-164 http://purl.obolibrary.org/obo/GO_0005623 denotes cell

sentences

Id Subject Object Predicate Lexical cue
T98 16-176 Sentence denotes The present study shows that Sox6 is required for silencing of ɛy globin in definitive erythropoiesis and suggests a role for Sox6 in erythroid cell maturation.
T10 16-176 Sentence denotes The present study shows that Sox6 is required for silencing of ɛy globin in definitive erythropoiesis and suggests a role for Sox6 in erythroid cell maturation.

simple1

Id Subject Object Predicate Lexical cue
T247 142-146 Protein denotes Sox6
T246 79-88 Protein denotes ɛy globin
T245 45-49 Protein denotes Sox6

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T890 45-49 Protein denotes Sox6
T891 79-88 Protein denotes ɛy globin
T892 142-146 Protein denotes Sox6
T902 53-61 Positive_regulation denotes required
T903 66-75 Negative_regulation denotes silencing
R593 T891 T903 themeOf ɛy globin,silencing
R596 T903 T902 themeOf silencing,required

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T498 45-49 Protein denotes Sox6
T499 79-88 Protein denotes ɛy globin
T500 142-146 Protein denotes Sox6
T512 66-75 Negative_regulation denotes silencing
T513 53-61 Positive_regulation denotes required
R454 T498 T513 causeOf Sox6,required
R455 T499 T512 themeOf ɛy globin,silencing
R460 T512 T513 themeOf silencing,required

DLUT931

Id Subject Object Predicate Lexical cue
T543 53-61 Positive_regulation denotes required
T542 66-75 Negative_regulation denotes silencing
T529 45-49 Protein denotes Sox6
T530 79-88 Protein denotes ɛy globin
T531 142-146 Protein denotes Sox6
R266 T542 T543 themeOf silencing,required
R469 T529 T543 causeOf Sox6,required
R470 T530 T542 themeOf ɛy globin,silencing

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T874 66-117 Negative_regulation denotes silencing of ɛy globin in definitive erythropoiesis
T842 45-49 Protein denotes Sox6
T857 76-88 Protein denotes of ɛy globin
T863 142-146 Protein denotes Sox6
R581 T857 T874 themeOf of ɛy globin,silencing of ɛy globin in definitive erythropoiesis

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T750 0-14 NNS denotes erythropoiesis
T751 14-15 . denotes .
T752 16-19 DT denotes The
T753 20-27 JJ denotes present
T754 28-33 NN denotes study
T755 34-39 VBZ denotes shows
T756 40-44 IN denotes that
T757 45-49 NNP denotes Sox6
T758 50-52 VBZ denotes is
T759 53-61 VBN denotes required
T760 62-65 IN denotes for
T761 66-75 VBG denotes silencing
T762 76-78 IN denotes of
T763 79-81 JJ denotes ɛy
T764 82-88 NN denotes globin
T765 89-91 IN denotes in
T766 92-102 JJ denotes definitive
T767 103-117 NNS denotes erythropoiesis
T768 118-121 CC denotes and
T769 122-130 VBZ denotes suggests
T770 131-132 DT denotes a
T771 133-137 NN denotes role
T772 138-141 IN denotes for
T773 142-146 NNP denotes Sox6
T774 147-149 IN denotes in
T775 150-159 JJ denotes erythroid
T776 160-164 NN denotes cell
T777 165-175 NN denotes maturation
T778 175-176 . denotes .
T779 177-181 RB denotes Thus
R520 T752 T754 det The,study
R521 T753 T754 amod present,study
R522 T754 T755 nsubj study,shows
R523 T755 T755 ROOT shows,shows
R524 T756 T759 mark that,required
R525 T757 T759 nsubjpass Sox6,required
R526 T758 T759 auxpass is,required
R527 T759 T755 ccomp required,shows
R528 T760 T759 prep for,required
R529 T761 T760 pcomp silencing,for
R530 T762 T761 prep of,silencing
R531 T763 T764 amod ɛy,globin
R532 T764 T762 pobj globin,of
R533 T765 T761 prep in,silencing
R534 T766 T767 amod definitive,erythropoiesis
R535 T767 T765 pobj erythropoiesis,in
R536 T768 T759 cc and,required
R537 T769 T755 conj suggests,shows
R538 T770 T771 det a,role
R539 T771 T769 dobj role,suggests
R540 T772 T771 prep for,role
R541 T773 T772 pobj Sox6,for
R542 T774 T771 prep in,role
R543 T775 T777 amod erythroid,maturation
R544 T776 T777 compound cell,maturation
R545 T777 T774 pobj maturation,in
R546 T778 T755 punct .,shows

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T227 53-61 Positive_regulation denotes required
T225 142-146 Protein denotes Sox6
T224 82-88 Protein denotes globin
T223 45-49 Protein denotes Sox6
T226 66-75 Negative_regulation denotes silencing
R39 T223 T227 causeOf Sox6,required
R40 T224 T226 themeOf globin,silencing
R445 T226 T227 themeOf silencing,required

testone

Id Subject Object Predicate Lexical cue
T34 45-49 Protein denotes Sox6
T35 79-88 Protein denotes ɛy globin
T36 142-146 Protein denotes Sox6

test3

Id Subject Object Predicate Lexical cue
T83 142-146 Protein denotes Sox6
T82 79-88 Protein denotes ɛy globin
T59 45-49 Protein denotes Sox6
T60 79-88 Protein denotes ɛy globin
T61 142-146 Protein denotes Sox6
T81 45-49 Protein denotes Sox6
R16 T82 T81 themeOf ɛy globin,Sox6
R17 T83 T81 themeOf Sox6,Sox6