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PMC:1359074 / 0-315 JSONTXT

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pmc-enju-pas

Id Subject Object Predicate Lexical cue
T250 0-4 NN denotes Sox6
T251 5-13 NNP denotes Directly
T252 14-22 NNP denotes Silences
T253 23-30 NNP denotes Epsilon
T254 31-37 NNP denotes Globin
T255 38-48 NN denotes Expression
T256 49-51 IN denotes in
T257 52-62 JJ denotes Definitive
T258 63-77 NN denotes Erythropoiesis
T293 310-314 NNP denotes Sry.
T292 308-309 -COMMA- denotes ,
T291 304-308 NN denotes gene
T290 292-303 VB denotes determining
T289 285-291 NN denotes testis
T288 281-284 DT denotes the
T287 278-280 IN denotes in
T286 268-277 VB denotes described
T285 262-267 RB denotes first
T284 260-261 -COMMA- denotes ,
T283 254-260 NN denotes domain
T282 246-253 NN denotes binding
T281 242-245 NN denotes DNA
T280 240-241 -RRB- denotes )
T279 237-240 NN denotes HMG
T278 236-237 -LRB- denotes (
T277 230-235 NN denotes group
T276 221-229 NN denotes mobility
T275 216-220 JJ denotes high
T274 206-215 VB denotes conserved
T273 202-205 DT denotes the
T272 199-201 IN denotes by
T271 191-198 VB denotes defined
T270 188-190 VB denotes is
T269 183-187 WDT denotes that
T268 176-182 NN denotes family
T267 169-175 NN denotes factor
T266 155-168 NN denotes transcription
T265 151-154 NN denotes Sox
T264 147-150 DT denotes the
T263 144-146 IN denotes of
T262 137-143 NN denotes member
T261 135-136 DT denotes a
T260 132-134 VB denotes is
T259 127-131 NN denotes Sox6
R42 T254 T250 arg1Of Globin,Sox6
R43 T254 T251 arg1Of Globin,Directly
R44 T254 T252 arg1Of Globin,Silences
R45 T254 T253 arg1Of Globin,Epsilon
R46 T255 T254 arg1Of Expression,Globin
R47 T255 T256 arg1Of Expression,in
R48 T258 T256 arg2Of Erythropoiesis,in
R49 T258 T257 arg1Of Erythropoiesis,Definitive
R50 T259 T260 arg1Of Sox6,is
R51 T262 T260 arg2Of member,is
R52 T262 T261 arg1Of member,a
R53 T262 T263 arg1Of member,of
R54 T262 T269 arg1Of member,that
R55 T262 T270 arg1Of member,is
R56 T262 T271 arg2Of member,defined
R57 T268 T263 arg2Of family,of
R58 T268 T264 arg1Of family,the
R59 T268 T265 arg1Of family,Sox
R60 T268 T266 arg1Of family,transcription
R61 T268 T267 arg1Of family,factor
R62 T271 T270 arg2Of defined,is
R63 T279 T278 arg2Of HMG,(
R64 T280 T278 arg3Of ),(
R65 T283 T271 arg1Of domain,defined
R66 T283 T272 arg2Of domain,by
R67 T283 T273 arg1Of domain,the
R68 T283 T274 arg2Of domain,conserved
R69 T283 T275 arg1Of domain,high
R70 T283 T276 arg1Of domain,mobility
R71 T283 T277 arg1Of domain,group
R72 T283 T278 arg1Of domain,(
R73 T283 T281 arg1Of domain,DNA
R74 T283 T282 arg1Of domain,binding
R75 T283 T284 arg1Of domain,","
R76 T283 T286 arg2Of domain,described
R77 T286 T285 arg1Of described,first
R78 T286 T287 arg1Of described,in
R79 T289 T287 arg2Of testis,in
R80 T289 T288 arg1Of testis,the
R81 T289 T290 arg1Of testis,determining
R82 T291 T290 arg2Of gene,determining

bionlp-st-ge-2016-test-proteins

Id Subject Object Predicate Lexical cue
T148 127-131 Protein denotes Sox6
T149 310-313 Protein denotes Sry
T146 0-4 Protein denotes Sox6
T147 23-37 Protein denotes Epsilon Globin

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T474 127-131 http://www.uniprot.org/uniprot/P35712 denotes Sox6
T473 0-4 http://www.uniprot.org/uniprot/P35712 denotes Sox6

UBERON-AE

Id Subject Object Predicate Lexical cue
T86 285-291 http://purl.obolibrary.org/obo/UBERON_0000473 denotes testis

GO-BP

Id Subject Object Predicate Lexical cue
T100 31-37 http://purl.obolibrary.org/obo/GO_0005344 denotes Globin
T104 52-77 http://purl.obolibrary.org/obo/GO_0060318 denotes Definitive Erythropoiesis
T107 63-77 http://purl.obolibrary.org/obo/GO_0030218 denotes Erythropoiesis
T110 155-168 http://purl.obolibrary.org/obo/GO_0006351 denotes transcription

GO-MF

Id Subject Object Predicate Lexical cue
T169 242-253 http://purl.obolibrary.org/obo/GO_0003677 denotes DNA binding
T170 242-260 http://purl.obolibrary.org/obo/GO_0050692 denotes DNA binding domain
T171 246-253 http://purl.obolibrary.org/obo/GO_0005488 denotes binding
T165 31-37 http://purl.obolibrary.org/obo/GO_0005344 denotes Globin

sentences

Id Subject Object Predicate Lexical cue
T92 0-77 Sentence denotes Sox6 Directly Silences Epsilon Globin Expression in Definitive Erythropoiesis
T1 0-77 Sentence denotes Sox6 Directly Silences Epsilon Globin Expression in Definitive Erythropoiesis
T2 78-116 Sentence denotes Sox6 Silence Epsilon Globin Expression
T3 118-126 Sentence denotes Abstract
T4 127-314 Sentence denotes Sox6 is a member of the Sox transcription factor family that is defined by the conserved high mobility group (HMG) DNA binding domain, first described in the testis determining gene, Sry.

simple1

Id Subject Object Predicate Lexical cue
T231 0-4 Protein denotes Sox6
T232 23-37 Protein denotes Epsilon Globin
T234 310-313 Protein denotes Sry
T233 127-131 Protein denotes Sox6

BioNLP16_DUT

Id Subject Object Predicate Lexical cue
T878 127-131 Protein denotes Sox6
T879 310-313 Protein denotes Sry
T876 0-4 Protein denotes Sox6
T877 23-37 Protein denotes Epsilon Globin
T895 38-48 Gene_expression denotes Expression
R585 T877 T895 themeOf Epsilon Globin,Expression

BioNLP16_Messiy

Id Subject Object Predicate Lexical cue
T486 127-131 Protein denotes Sox6
T487 310-313 Protein denotes Sry
T484 0-4 Protein denotes Sox6
T485 23-37 Protein denotes Epsilon Globin
T503 38-48 Gene_expression denotes Expression
T504 14-22 Negative_regulation denotes Silences
R446 T485 T503 themeOf Epsilon Globin,Expression
R458 T503 T504 themeOf Expression,Silences

DLUT931

Id Subject Object Predicate Lexical cue
T515 0-4 Protein denotes Sox6
T517 127-131 Protein denotes Sox6
T518 310-313 Protein denotes Sry
T516 23-37 Protein denotes Epsilon Globin
T534 38-48 Gene_expression denotes Expression
T535 14-22 Negative_regulation denotes Silences
R461 T515 T535 causeOf Sox6,Silences
R462 T516 T534 themeOf Epsilon Globin,Expression
R473 T534 T535 themeOf Expression,Silences

bionlp-st-ge-2016-test-ihmc

Id Subject Object Predicate Lexical cue
T868 14-77 Gene_expression denotes Silences Epsilon Globin Expression in Definitive Erythropoiesis
T875 281-313 Localization denotes the testis determining gene, Sry
T838 151-154 Protein denotes Sox
T844 127-131 Protein denotes Sox6
T846 281-313 Protein denotes the testis determining gene, Sry
T851 147-182 Protein denotes the Sox transcription factor family
T864 281-313 Protein denotes the testis determining gene, Sry
T865 242-313 Entity denotes DNA binding domain, first described in the testis determining gene, Sry
T843 14-37 Protein denotes Silences Epsilon Globin
T848 0-4 Protein denotes Sox6
R575 T843 T868 themeOf Silences Epsilon Globin,Silences Epsilon Globin Expression in Definitive Erythropoiesis
R576 T846 T875 themeOf "the testis determining gene, Sry","the testis determining gene, Sry"

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T573 0-4 NNP denotes Sox6
T574 5-13 RB denotes Directly
T575 14-22 NNPS denotes Silences
T576 23-30 NNP denotes Epsilon
T577 31-37 NNP denotes Globin
T578 38-48 NNP denotes Expression
T579 49-51 IN denotes in
T580 52-62 NNP denotes Definitive
T581 63-77 NNP denotes Erythropoiesis
T617 313-314 . denotes .
T616 310-313 NNP denotes Sry
T615 308-309 , denotes ,
T614 304-308 NN denotes gene
T613 292-303 VBG denotes determining
T612 285-291 NN denotes testis
T611 281-284 DT denotes the
T610 278-280 IN denotes in
T609 268-277 VBN denotes described
T608 262-267 JJ denotes first
T607 260-261 , denotes ,
T606 254-260 NN denotes domain
T605 246-253 JJ denotes binding
T604 242-245 NNP denotes DNA
T603 240-241 -RRB- denotes )
T602 237-240 NNP denotes HMG
T601 236-237 -LRB- denotes (
T600 230-235 NN denotes group
T599 221-229 NN denotes mobility
T598 216-220 JJ denotes high
T597 206-215 JJ denotes conserved
T596 202-205 DT denotes the
T595 199-201 IN denotes by
T594 191-198 VBN denotes defined
T593 188-190 VBZ denotes is
T592 183-187 WDT denotes that
T591 176-182 NN denotes family
T590 169-175 NN denotes factor
T589 155-168 NN denotes transcription
T588 151-154 NNPS denotes Sox
T587 147-150 DT denotes the
T586 144-146 IN denotes of
T585 137-143 NN denotes member
T584 135-136 DT denotes a
T583 132-134 VBZ denotes is
T582 127-131 NNP denotes Sox6
R269 T573 T575 nsubj Sox6,Silences
R270 T574 T575 advmod Directly,Silences
R271 T575 T583 nsubj Silences,is
R272 T576 T578 compound Epsilon,Expression
R273 T577 T578 compound Globin,Expression
R274 T578 T583 nsubj Expression,is
R275 T579 T578 prep in,Expression
R276 T580 T582 compound Definitive,Sox6
R277 T581 T582 compound Erythropoiesis,Sox6
R278 T582 T579 pobj Sox6,in
R279 T583 T583 ROOT is,is
R280 T584 T585 det a,member
R281 T585 T583 attr member,is
R282 T586 T585 prep of,member
R283 T587 T591 det the,family
R284 T588 T591 compound Sox,family
R285 T589 T590 compound transcription,factor
R286 T590 T591 compound factor,family
R287 T591 T586 pobj family,of
R288 T592 T594 nsubjpass that,defined
R289 T593 T594 auxpass is,defined
R290 T594 T585 relcl defined,member
R291 T595 T594 agent by,defined
R292 T596 T600 det the,group
R293 T597 T600 amod conserved,group
R294 T598 T600 amod high,group
R295 T599 T600 compound mobility,group
R296 T600 T595 pobj group,by
R297 T601 T602 punct (,HMG
R298 T602 T600 appos HMG,group
R299 T603 T602 punct ),HMG
R300 T604 T606 compound DNA,domain
R301 T605 T606 amod binding,domain
R302 T606 T600 conj domain,group
R303 T607 T606 punct ",",domain
R304 T608 T609 advmod first,described
R305 T609 T600 acl described,group
R306 T610 T609 prep in,described
R307 T611 T614 det the,gene
R308 T612 T614 amod testis,gene
R309 T613 T614 amod determining,gene
R310 T614 T610 pobj gene,in
R311 T615 T614 punct ",",gene
R312 T616 T614 appos Sry,gene
R313 T617 T583 punct .,is

bionlp-st-ge-2016-test-tees

Id Subject Object Predicate Lexical cue
T198 0-4 Protein denotes Sox6
T199 23-37 Protein denotes Epsilon Globin
T200 38-48 Gene_expression denotes Expression
T201 14-22 Negative_regulation denotes Silences
T207 191-198 Negative_regulation denotes defined
T206 191-198 Negative_regulation denotes defined
T205 254-260 Entity denotes domain
T204 310-313 Protein denotes Sry
T203 151-182 Protein denotes Sox transcription factor family
T202 127-131 Protein denotes Sox6
R25 T198 T201 causeOf Sox6,Silences
R26 T199 T200 themeOf Epsilon Globin,Expression
R27 T200 T201 themeOf Expression,Silences
R28 T202 T206 themeOf Sox6,defined
R29 T203 T207 themeOf Sox transcription factor family,defined
R30 T204 T205 partOf Sry,domain
R31 T205 T206 Site domain,defined
R32 T205 T207 Site domain,defined

testone

Id Subject Object Predicate Lexical cue
T22 127-131 Protein denotes Sox6
T20 0-4 Protein denotes Sox6
T21 23-37 Protein denotes Epsilon Globin
T39 38-48 Gene_expression denotes Expression
T23 310-313 Protein denotes Sry
R1 T21 T39 themeOf Epsilon Globin,Expression

test3

Id Subject Object Predicate Lexical cue
T47 127-131 Protein denotes Sox6
T45 0-4 Protein denotes Sox6
T46 23-37 Protein denotes Epsilon Globin
T64 0-4 Protein denotes Sox6
T65 23-37 Protein denotes Epsilon Globin
T66 38-48 Gene_expression denotes Expression
T48 310-313 Protein denotes Sry
T67 127-131 Protein denotes Sox6
T68 310-313 Protein denotes Sry
R9 T65 T66 themeOf Epsilon Globin,Expression
R10 T65 T64 themeOf Epsilon Globin,Sox6
R11 T66 T64 themeOf Expression,Sox6