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PMC:1359071 / 5344-6158 JSONTXT

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craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T1899 99-106 SO:0000704 denotes genetic
T1900 150-163 _FRAGMENT denotes regulation of
T1901 170-185 GO:0010468 denotes gene expression
T1902 164-169 UBERON:0002107 denotes liver
T1903 170-174 SO:0000704 denotes gene
T1904 276-290 CHEBI:39015 denotes apolipoprotein
T1905 276-292 PR:000004155 denotes apolipoprotein E
T1906 299-303 PR:000004155 denotes ApoE
T1907 328-332 PR:000004155 denotes ApoE
T1908 432-441 GO:0008152 denotes metabolic
T1909 478-485 NCBITaxon:33208 denotes animals
T1910 556-560 SO:0000771 denotes QTLs
T1911 598-602 SO:0000704 denotes gene
T1912 598-613 GO:0010467 denotes gene expression
T1913 614-618 SO:0000771 denotes QTLs
T1914 717-724 SO:0000704 denotes genetic
T1915 725-735 GO:0065007 denotes regulation
T1916 743-750 UBERON:0000991 denotes gonadal
T1917 782-787 SO:0000704 denotes genes
R248 T1901 T1900 _lexicallyChainedTo gene expression,regulation of

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T1969 99-106 SO_EXT:0000704 denotes genetic
T1970 150-163 _FRAGMENT denotes regulation of
T1971 170-185 GO:0010468 denotes gene expression
T1972 164-169 UBERON:0002107 denotes liver
T1973 170-174 SO_EXT:0000704 denotes gene
T1974 276-290 CHEBI:39015 denotes apolipoprotein
T1975 276-292 PR_EXT:000004155 denotes apolipoprotein E
T1976 293-297 SO_EXT:sequence_nullness denotes null
T1977 299-303 PR_EXT:000004155 denotes ApoE
T1978 303-304 SO_EXT:sequence_nullness_or_absence denotes −
T1979 305-306 SO_EXT:sequence_nullness_or_absence denotes −
T1980 328-332 PR_EXT:000004155 denotes ApoE
T1981 332-333 SO_EXT:sequence_nullness_or_absence denotes −
T1982 334-335 SO_EXT:sequence_nullness_or_absence denotes −
T1983 432-441 GO:0008152 denotes metabolic
T1984 478-485 NCBITaxon:33208 denotes animals
T1985 556-560 SO_EXT:0000771 denotes QTLs
T1986 598-602 SO_EXT:0000704 denotes gene
T1987 598-613 GO:0010467 denotes gene expression
T1988 614-618 SO_EXT:0000771 denotes QTLs
T1989 717-724 SO_EXT:0000704 denotes genetic
T1990 725-735 GO:0065007 denotes regulation
T1991 743-750 UBERON:0000991 denotes gonadal
T1992 751-754 CHEBI_UBERON_EXT:triglyceride_or_adipose_tissue denotes fat
T1993 782-787 SO_EXT:0000704 denotes genes
R249 T1971 T1970 _lexicallyChainedTo gene expression,regulation of

craft-sa-dev

Id Subject Object Predicate Lexical cue
T2433 0-4 RB denotes Here
T2434 8-14 VBP denotes report
T2435 5-7 PRP denotes we
T2436 15-18 DT denotes the
T2437 19-30 NN denotes application
T2438 31-33 IN denotes of
T2439 34-38 DT denotes this
T2440 50-58 NN denotes approach
T2441 39-49 VBN denotes integrated
T2442 59-61 TO denotes to
T2443 62-67 VB denotes study
T2444 68-71 DT denotes the
T2445 72-84 NN denotes significance
T2446 85-87 IN denotes of
T2447 88-91 NN denotes sex
T2448 92-94 IN denotes on
T2449 95-98 DT denotes the
T2450 107-119 NNS denotes determinants
T2451 99-106 JJ denotes genetic
T2452 120-122 IN denotes of
T2453 123-130 NN denotes obesity
T2454 131-134 CC denotes and
T2455 135-138 DT denotes the
T2456 150-160 NN denotes regulation
T2457 139-149 VBN denotes associated
T2458 161-163 IN denotes of
T2459 164-169 NN denotes liver
T2460 175-185 NN denotes expression
T2461 170-174 NN denotes gene
T2462 186-188 IN denotes in
T2463 189-191 DT denotes an
T2464 195-205 NN denotes intercross
T2465 192-194 NN denotes F2
T2466 206-213 VBN denotes derived
T2467 214-218 IN denotes from
T2468 219-222 DT denotes the
T2469 230-237 NNS denotes strains
T2470 223-229 JJ denotes inbred
T2471 238-243 NN denotes C57BL
T2472 244-246 NN denotes 6J
T2473 243-244 HYPH denotes /
T2474 247-248 -LRB- denotes (
T2475 248-250 NN denotes B6
T2476 250-251 -RRB- denotes )
T2477 252-255 CC denotes and
T2478 256-259 NN denotes C3H
T2479 260-263 NN denotes HeJ
T2480 259-260 HYPH denotes /
T2481 264-265 -LRB- denotes (
T2482 265-268 NN denotes C3H
T2483 268-269 -RRB- denotes )
T2484 270-272 IN denotes on
T2485 273-275 DT denotes an
T2486 308-318 NN denotes background
T2487 276-290 NN denotes apolipoprotein
T2488 291-292 NN denotes E
T2489 293-297 JJ denotes null
T2490 298-299 -LRB- denotes (
T2491 299-303 NN denotes ApoE
T2492 303-304 SYM denotes −
T2493 304-305 HYPH denotes /
T2494 305-306 SYM denotes −
T2495 306-307 -RRB- denotes )
T2496 318-319 . denotes .
T2497 319-451 sentence denotes The BXH.ApoE−/− population was designed to recapitulate several of the phenotypes associated with the so-called metabolic syndrome.
T2498 320-323 DT denotes The
T2499 336-346 NN denotes population
T2500 324-332 NN denotes BXH.ApoE
T2501 332-333 SYM denotes −
T2502 333-334 HYPH denotes /
T2503 334-335 SYM denotes −
T2504 351-359 VBN denotes designed
T2505 347-350 VBD denotes was
T2506 360-362 TO denotes to
T2507 363-375 VB denotes recapitulate
T2508 376-383 JJ denotes several
T2509 384-386 IN denotes of
T2510 387-390 DT denotes the
T2511 391-401 NNS denotes phenotypes
T2512 402-412 VBN denotes associated
T2513 413-417 IN denotes with
T2514 418-421 DT denotes the
T2515 442-450 NN denotes syndrome
T2516 422-424 RB denotes so
T2517 425-431 VBN denotes called
T2518 424-425 HYPH denotes -
T2519 432-441 JJ denotes metabolic
T2520 450-451 . denotes .
T2521 451-568 sentence denotes The cross consists of 334 animals of both sexes, allowing us to specifically test for the dependence of QTLs on sex.
T2522 452-455 DT denotes The
T2523 456-461 NN denotes cross
T2524 462-470 VBZ denotes consists
T2525 471-473 IN denotes of
T2526 474-477 CD denotes 334
T2527 478-485 NNS denotes animals
T2528 486-488 IN denotes of
T2529 489-493 DT denotes both
T2530 494-499 NNS denotes sexes
T2531 499-501 , denotes ,
T2532 501-509 VBG denotes allowing
T2533 510-512 PRP denotes us
T2534 529-533 VB denotes test
T2535 513-515 TO denotes to
T2536 516-528 RB denotes specifically
T2537 534-537 IN denotes for
T2538 538-541 DT denotes the
T2539 542-552 NN denotes dependence
T2540 553-555 IN denotes of
T2541 556-560 NNS denotes QTLs
T2542 561-563 IN denotes on
T2543 564-567 NN denotes sex
T2544 567-568 . denotes .
T2545 568-678 sentence denotes We detected several thousand gene expression QTLs (eQTLs), a significant proportion of which were sex-biased.
T2546 569-571 PRP denotes We
T2547 572-580 VBD denotes detected
T2548 581-588 JJ denotes several
T2549 589-597 CD denotes thousand
T2550 614-618 NNS denotes QTLs
T2551 598-602 NN denotes gene
T2552 603-613 NN denotes expression
T2553 619-620 -LRB- denotes (
T2554 620-625 NNS denotes eQTLs
T2555 625-626 -RRB- denotes )
T2556 626-628 , denotes ,
T2557 628-629 DT denotes a
T2558 642-652 NN denotes proportion
T2559 630-641 JJ denotes significant
T2560 662-666 VBD denotes were
T2561 653-655 IN denotes of
T2562 656-661 WDT denotes which
T2563 667-670 NN denotes sex
T2564 671-677 VBN denotes biased
T2565 670-671 HYPH denotes -
T2566 677-678 . denotes .
T2567 678-814 sentence denotes We used these analyses to dissect the genetic regulation of the gonadal fat mass trait and to identify genes associated with the trait.
T2568 679-681 PRP denotes We
T2569 682-686 VBD denotes used
T2570 687-692 DT denotes these
T2571 693-701 NNS denotes analyses
T2572 702-704 TO denotes to
T2573 705-712 VB denotes dissect
T2574 713-716 DT denotes the
T2575 725-735 NN denotes regulation
T2576 717-724 JJ denotes genetic
T2577 736-738 IN denotes of
T2578 739-742 DT denotes the
T2579 760-765 NN denotes trait
T2580 743-750 JJ denotes gonadal
T2581 755-759 NN denotes mass
T2582 751-754 NN denotes fat
T2583 766-769 CC denotes and
T2584 770-772 TO denotes to
T2585 773-781 VB denotes identify
T2586 782-787 NNS denotes genes
T2587 788-798 VBN denotes associated
T2588 799-803 IN denotes with
T2589 804-807 DT denotes the
T2590 808-813 NN denotes trait
T2591 813-814 . denotes .
R642 T2443 T2437 acl study,application
R644 T2444 T2445 det the,significance
R646 T2445 T2443 dobj significance,study
R647 T2446 T2445 prep of,significance
R649 T2447 T2446 pobj sex,of
R650 T2448 T2445 prep on,significance
R652 T2449 T2450 det the,determinants
R653 T2450 T2448 pobj determinants,on
R654 T2451 T2450 amod genetic,determinants
R656 T2452 T2450 prep of,determinants
R657 T2453 T2452 pobj obesity,of
R658 T2454 T2450 cc and,determinants
R660 T2455 T2456 det the,regulation
R661 T2456 T2450 conj regulation,determinants
R662 T2457 T2456 amod associated,regulation
R664 T2458 T2456 prep of,regulation
R665 T2459 T2460 compound liver,expression
R666 T2460 T2458 pobj expression,of
R667 T2461 T2460 compound gene,expression
R668 T2462 T2443 prep in,study
R670 T2463 T2464 det an,intercross
R671 T2464 T2462 pobj intercross,in
R672 T2465 T2464 compound F2,intercross
R674 T2466 T2464 acl derived,intercross
R675 T2467 T2466 prep from,derived
R676 T2468 T2469 det the,strains
R678 T2469 T2467 pobj strains,from
R679 T2470 T2469 amod inbred,strains
R680 T2471 T2472 compound C57BL,6J
R681 T2472 T2469 appos 6J,strains
R684 T2473 T2472 punct /,6J
R685 T2474 T2475 punct (,B6
R687 T2475 T2472 parataxis B6,6J
R688 T2476 T2475 punct ),B6
R689 T2477 T2472 cc and,6J
R691 T2478 T2479 compound C3H,HeJ
R692 T2479 T2472 conj HeJ,6J
R693 T2480 T2479 punct /,HeJ
R695 T2481 T2482 punct (,C3H
R696 T2482 T2479 parataxis C3H,HeJ
R697 T2483 T2482 punct ),C3H
R699 T2484 T2469 prep on,strains
R700 T2485 T2486 det an,background
R702 T2486 T2484 pobj background,on
R703 T2487 T2488 compound apolipoprotein,E
R704 T2488 T2489 npadvmod E,null
R706 T2489 T2486 amod null,background
R707 T2490 T2491 punct (,ApoE
R708 T2491 T2486 parataxis ApoE,background
R710 T2492 T2491 punct −,ApoE
R711 T2493 T2491 punct /,ApoE
R712 T2494 T2491 punct −,ApoE
R713 T2433 T2434 advmod Here,report
R714 T2495 T2491 punct ),ApoE
R715 T2496 T2434 punct .,report
R716 T2498 T2499 det The,population
R717 T2435 T2434 nsubj we,report
R718 T2499 T2504 nsubjpass population,designed
R719 T2500 T2499 nmod BXH.ApoE,population
R720 T2501 T2500 punct −,BXH.ApoE
R721 T2502 T2500 punct /,BXH.ApoE
R722 T2503 T2500 punct −,BXH.ApoE
R723 T2505 T2504 auxpass was,designed
R724 T2506 T2507 aux to,recapitulate
R725 T2436 T2437 det the,application
R726 T2507 T2504 advcl recapitulate,designed
R727 T2508 T2507 dobj several,recapitulate
R728 T2509 T2508 prep of,several
R729 T2437 T2434 dobj application,report
R730 T2510 T2511 det the,phenotypes
R731 T2511 T2509 pobj phenotypes,of
R732 T2512 T2511 acl associated,phenotypes
R733 T2438 T2437 prep of,application
R734 T2513 T2512 prep with,associated
R735 T2439 T2440 det this,approach
R736 T2514 T2515 det the,syndrome
R737 T2515 T2513 pobj syndrome,with
R738 T2516 T2517 advmod so,called
R739 T2517 T2515 amod called,syndrome
R740 T2440 T2438 pobj approach,of
R741 T2518 T2517 punct -,called
R742 T2519 T2515 amod metabolic,syndrome
R743 T2520 T2504 punct .,designed
R744 T2441 T2440 amod integrated,approach
R745 T2522 T2523 det The,cross
R746 T2523 T2524 nsubj cross,consists
R747 T2442 T2443 aux to,study
R748 T2525 T2524 prep of,consists
R749 T2549 T2550 nummod thousand,QTLs
R750 T2526 T2527 nummod 334,animals
R751 T2527 T2525 pobj animals,of
R752 T2528 T2527 prep of,animals
R753 T2529 T2530 det both,sexes
R754 T2530 T2528 pobj sexes,of
R755 T2531 T2524 punct ", ",consists
R756 T2550 T2547 dobj QTLs,detected
R757 T2532 T2524 advcl allowing,consists
R758 T2533 T2534 nsubj us,test
R759 T2534 T2532 ccomp test,allowing
R760 T2551 T2550 compound gene,QTLs
R761 T2535 T2534 aux to,test
R762 T2536 T2534 advmod specifically,test
R763 T2537 T2534 prep for,test
R764 T2552 T2550 compound expression,QTLs
R765 T2538 T2539 det the,dependence
R766 T2539 T2537 pobj dependence,for
R767 T2540 T2539 prep of,dependence
R768 T2553 T2550 punct (,QTLs
R769 T2541 T2540 pobj QTLs,of
R770 T2542 T2539 prep on,dependence
R771 T2543 T2542 pobj sex,on
R772 T2544 T2524 punct .,consists
R773 T2546 T2547 nsubj We,detected
R774 T2554 T2550 appos eQTLs,QTLs
R775 T2548 T2549 amod several,thousand
R776 T2555 T2550 punct ),QTLs
R777 T2556 T2550 punct ", ",QTLs
R778 T2557 T2558 det a,proportion
R779 T2558 T2560 dep proportion,were
R780 T2559 T2558 amod significant,proportion
R781 T2560 T2550 relcl were,QTLs
R782 T2561 T2558 prep of,proportion
R783 T2562 T2561 pobj which,of
R784 T2563 T2564 npadvmod sex,biased
R785 T2564 T2560 acomp biased,were
R786 T2565 T2564 punct -,biased
R787 T2566 T2547 punct .,detected
R788 T2568 T2569 nsubj We,used
R789 T2570 T2571 det these,analyses
R790 T2571 T2569 dobj analyses,used
R791 T2572 T2573 aux to,dissect
R792 T2573 T2569 advcl dissect,used
R793 T2574 T2575 det the,regulation
R794 T2575 T2573 dobj regulation,dissect
R795 T2576 T2575 amod genetic,regulation
R796 T2577 T2575 prep of,regulation
R797 T2578 T2579 det the,trait
R798 T2579 T2577 pobj trait,of
R799 T2580 T2581 amod gonadal,mass
R800 T2581 T2579 compound mass,trait
R801 T2582 T2581 compound fat,mass
R802 T2583 T2573 cc and,dissect
R803 T2584 T2585 aux to,identify
R804 T2585 T2573 conj identify,dissect
R805 T2586 T2585 dobj genes,identify
R806 T2587 T2586 acl associated,genes
R807 T2588 T2587 prep with,associated
R808 T2589 T2590 det the,trait
R809 T2590 T2588 pobj trait,with
R810 T2591 T2569 punct .,used