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PMC:1359071 / 47513-48030 JSONTXT

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craft-ca-core-dev

Below, discontinuous spans are shown in the bag model. You can change it to the chain model.

Id Subject Object Predicate Lexical cue
T23046 141-145 SO:0000704 denotes gene

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the bag model. You can change it to the chain model.

Id Subject Object Predicate Lexical cue
T23059 141-145 SO_EXT:0000704 denotes gene
T23060 355-359 SO_EXT:sequence_nullness denotes null

craft-sa-dev

Id Subject Object Predicate Lexical cue
T23133 0-5 WRB denotes where
T23134 9-11 VBZ denotes is
T23135 6-8 NN denotes β0
T23136 12-15 DT denotes the
T23137 16-25 NN denotes intercept
T23138 25-27 , denotes ,
T23139 27-30 CC denotes and
T23140 31-33 NN denotes β1
T23141 46-55 VBP denotes represent
T23142 33-35 , denotes ,
T23143 35-37 NN denotes β2
T23144 37-39 , denotes ,
T23145 39-42 CC denotes and
T23146 43-45 NN denotes β3
T23147 56-59 DT denotes the
T23148 71-83 NNS denotes coefficients
T23149 60-70 NN denotes regression
T23150 84-86 IN denotes of
T23151 87-92 PRP$ denotes their
T23152 104-109 NNS denotes terms
T23153 93-103 JJ denotes respective
T23154 109-110 . denotes .
T23155 110-214 sentence denotes As before, the parameter “sex*gene” is only retained if it significantly improves the fit of the model.
T23156 111-113 IN denotes As
T23157 155-163 VBN denotes retained
T23158 114-120 RB denotes before
T23159 120-122 , denotes ,
T23160 122-125 DT denotes the
T23161 126-135 NN denotes parameter
T23162 136-137 `` denotes “
T23163 137-140 NN denotes sex
T23164 140-141 SYM denotes *
T23165 141-145 NN denotes gene
T23166 145-146 '' denotes ”
T23167 147-149 VBZ denotes is
T23168 150-154 RB denotes only
T23169 164-166 IN denotes if
T23170 184-192 VBZ denotes improves
T23171 167-169 PRP denotes it
T23172 170-183 RB denotes significantly
T23173 193-196 DT denotes the
T23174 197-200 NN denotes fit
T23175 201-203 IN denotes of
T23176 204-207 DT denotes the
T23177 208-213 NN denotes model
T23178 213-214 . denotes .
T23179 214-379 sentence denotes The p-value threshold for significant correlation is calculated by an F test, which compares the appropriate model (Equation 7 or 8) to the null model (Equation 9).
T23180 215-218 DT denotes The
T23181 227-236 NN denotes threshold
T23182 219-220 NN denotes p
T23183 221-226 NN denotes value
T23184 220-221 HYPH denotes -
T23185 268-278 VBN denotes calculated
T23186 237-240 IN denotes for
T23187 241-252 JJ denotes significant
T23188 253-264 NN denotes correlation
T23189 265-267 VBZ denotes is
T23190 279-281 IN denotes by
T23191 282-284 DT denotes an
T23192 287-291 NN denotes test
T23193 285-286 NN denotes F
T23194 291-293 , denotes ,
T23195 293-298 WDT denotes which
T23196 299-307 VBZ denotes compares
T23197 308-311 DT denotes the
T23198 324-329 NN denotes model
T23199 312-323 JJ denotes appropriate
T23200 330-331 -LRB- denotes (
T23201 340-341 CD denotes 7
T23202 331-339 NN denotes Equation
T23203 342-344 CC denotes or
T23204 345-346 CD denotes 8
T23205 346-347 -RRB- denotes )
T23206 348-350 IN denotes to
T23207 351-354 DT denotes the
T23208 360-365 NN denotes model
T23209 355-359 JJ denotes null
T23210 366-367 -LRB- denotes (
T23211 367-375 NN denotes Equation
T23212 376-377 CD denotes 9
T23213 377-378 -RRB- denotes )
T23214 378-379 . denotes .
T23215 379-517 sentence denotes As before, multiple testing was addressed with use of the FDR, ranking the p-values obtained from the above F tests and setting α = 0.01.
T23216 380-382 IN denotes As
T23217 412-421 VBN denotes addressed
T23218 383-389 RB denotes before
T23219 389-391 , denotes ,
T23220 391-399 JJ denotes multiple
T23221 400-407 NN denotes testing
T23222 408-411 VBD denotes was
T23223 422-426 IN denotes with
T23224 427-430 NN denotes use
T23225 431-433 IN denotes of
T23226 434-437 DT denotes the
T23227 438-441 NN denotes FDR
T23228 441-443 , denotes ,
T23229 443-450 VBG denotes ranking
T23230 451-454 DT denotes the
T23231 457-463 NNS denotes values
T23232 455-456 NN denotes p
T23233 456-457 HYPH denotes -
T23234 464-472 VBN denotes obtained
T23235 473-477 IN denotes from
T23236 478-481 DT denotes the
T23237 490-495 NNS denotes tests
T23238 482-487 JJ denotes above
T23239 488-489 NN denotes F
T23240 496-499 CC denotes and
T23241 500-507 VBG denotes setting
T23242 508-509 NN denotes α
T23243 512-516 CD denotes 0.01
T23244 510-511 SYM denotes =
T23245 516-517 . denotes .
R7299 T23133 T23134 advmod where,is
R7301 T23135 T23134 nsubj β0,is
R7302 T23136 T23137 det the,intercept
R7303 T23137 T23134 attr intercept,is
R7304 T23138 T23134 punct ", ",is
R7305 T23139 T23134 cc and,is
R7306 T23140 T23141 nsubj β1,represent
R7307 T23141 T23134 conj represent,is
R7308 T23142 T23140 punct ", ",β1
R7309 T23143 T23140 conj β2,β1
R7310 T23144 T23143 punct ", ",β2
R7311 T23145 T23143 cc and,β2
R7312 T23146 T23143 conj β3,β2
R7313 T23147 T23148 det the,coefficients
R7314 T23148 T23141 dobj coefficients,represent
R7315 T23149 T23148 compound regression,coefficients
R7316 T23150 T23148 prep of,coefficients
R7317 T23151 T23152 poss their,terms
R7318 T23152 T23150 pobj terms,of
R7319 T23153 T23152 amod respective,terms
R7321 T23156 T23157 prep As,retained
R7322 T23158 T23156 pcomp before,As
R7323 T23159 T23157 punct ", ",retained
R7324 T23160 T23161 det the,parameter
R7325 T23161 T23157 nsubjpass parameter,retained
R7326 T23162 T23161 punct “,parameter
R7327 T23163 T23161 appos sex,parameter
R7328 T23164 T23165 punct *,gene
R7329 T23165 T23163 prep gene,sex
R7330 T23166 T23157 punct ”,retained
R7331 T23167 T23157 auxpass is,retained
R7332 T23168 T23157 advmod only,retained
R7333 T23169 T23170 mark if,improves
R7334 T23170 T23157 advcl improves,retained
R7335 T23171 T23170 nsubj it,improves
R7336 T23172 T23170 advmod significantly,improves
R7337 T23173 T23174 det the,fit
R7338 T23174 T23170 dobj fit,improves
R7339 T23175 T23174 prep of,fit
R7340 T23176 T23177 det the,model
R7341 T23177 T23175 pobj model,of
R7342 T23178 T23157 punct .,retained
R7343 T23180 T23181 det The,threshold
R7344 T23181 T23185 nsubjpass threshold,calculated
R7345 T23182 T23183 compound p,value
R7346 T23183 T23181 compound value,threshold
R7347 T23184 T23183 punct -,value
R7348 T23186 T23181 prep for,threshold
R7349 T23187 T23188 amod significant,correlation
R7350 T23188 T23186 pobj correlation,for
R7351 T23189 T23185 auxpass is,calculated
R7352 T23190 T23185 prep by,calculated
R7353 T23191 T23192 det an,test
R7354 T23192 T23190 pobj test,by
R7355 T23193 T23192 compound F,test
R7356 T23194 T23192 punct ", ",test
R7357 T23195 T23196 dep which,compares
R7358 T23196 T23192 relcl compares,test
R7359 T23197 T23198 det the,model
R7360 T23198 T23196 dobj model,compares
R7361 T23199 T23198 amod appropriate,model
R7362 T23200 T23201 punct (,7
R7363 T23201 T23198 parataxis 7,model
R7364 T23202 T23201 nmod Equation,7
R7365 T23203 T23201 cc or,7
R7366 T23204 T23201 conj 8,7
R7367 T23205 T23201 punct ),7
R7368 T23206 T23196 prep to,compares
R7369 T23207 T23208 det the,model
R7370 T23208 T23206 pobj model,to
R7371 T23209 T23208 amod null,model
R7372 T23210 T23211 punct (,Equation
R7373 T23211 T23208 parataxis Equation,model
R7374 T23212 T23211 nummod 9,Equation
R7375 T23213 T23211 punct ),Equation
R7376 T23214 T23185 punct .,calculated
R7377 T23216 T23217 prep As,addressed
R7378 T23218 T23216 pcomp before,As
R7379 T23219 T23217 punct ", ",addressed
R7380 T23220 T23221 amod multiple,testing
R7381 T23221 T23217 nsubjpass testing,addressed
R7382 T23222 T23217 auxpass was,addressed
R7383 T23223 T23217 prep with,addressed
R7384 T23224 T23223 pobj use,with
R7385 T23225 T23224 prep of,use
R7386 T23226 T23227 det the,FDR
R7387 T23227 T23225 pobj FDR,of
R7388 T23228 T23217 punct ", ",addressed
R7389 T23229 T23217 advcl ranking,addressed
R7390 T23230 T23231 det the,values
R7391 T23231 T23229 dobj values,ranking
R7392 T23232 T23231 compound p,values
R7393 T23233 T23231 punct -,values
R7394 T23234 T23231 acl obtained,values
R7395 T23235 T23234 prep from,obtained
R7396 T23236 T23237 det the,tests
R7397 T23237 T23235 pobj tests,from
R7398 T23238 T23237 amod above,tests
R7399 T23239 T23237 compound F,tests
R7400 T23240 T23229 cc and,ranking
R7401 T23241 T23229 conj setting,ranking
R7402 T23242 T23243 nsubj α,0.01
R7403 T23243 T23241 ccomp 0.01,setting
R7404 T23244 T23243 punct =,0.01
R7405 T23245 T23217 punct .,addressed