Id |
Subject |
Object |
Predicate |
Lexical cue |
T21959 |
0-2 |
TO |
denotes |
To |
T21960 |
3-12 |
VB |
denotes |
determine |
T21961 |
110-119 |
VBD |
denotes |
estimated |
T21962 |
13-18 |
WDT |
denotes |
which |
T21963 |
83-85 |
VBZ |
denotes |
is |
T21964 |
19-21 |
IN |
denotes |
of |
T21965 |
22-25 |
DT |
denotes |
the |
T21966 |
31-37 |
NNS |
denotes |
models |
T21967 |
26-30 |
CD |
denotes |
four |
T21968 |
38-39 |
-LRB- |
denotes |
( |
T21969 |
55-56 |
CD |
denotes |
6 |
T21970 |
39-48 |
NNS |
denotes |
Equations |
T21971 |
49-50 |
CD |
denotes |
2 |
T21972 |
50-52 |
, |
denotes |
, |
T21973 |
52-53 |
CD |
denotes |
4 |
T21974 |
53-55 |
, |
denotes |
, |
T21975 |
56-58 |
, |
denotes |
, |
T21976 |
58-61 |
CC |
denotes |
and |
T21977 |
62-65 |
DT |
denotes |
the |
T21978 |
72-81 |
NN |
denotes |
selection |
T21979 |
66-71 |
NN |
denotes |
model |
T21980 |
81-82 |
-RRB- |
denotes |
) |
T21981 |
86-93 |
JJ |
denotes |
optimal |
T21982 |
93-95 |
, |
denotes |
, |
T21983 |
95-97 |
PRP |
denotes |
we |
T21984 |
98-109 |
RB |
denotes |
empirically |
T21985 |
120-123 |
DT |
denotes |
the |
T21986 |
124-127 |
NN |
denotes |
FDR |
T21987 |
128-131 |
IN |
denotes |
for |
T21988 |
132-136 |
DT |
denotes |
each |
T21989 |
137-142 |
NN |
denotes |
model |
T21990 |
143-147 |
IN |
denotes |
over |
T21991 |
148-149 |
DT |
denotes |
a |
T21992 |
150-153 |
NN |
denotes |
set |
T21993 |
154-156 |
IN |
denotes |
of |
T21994 |
157-162 |
CD |
denotes |
3,000 |
T21995 |
163-168 |
NNS |
denotes |
genes |
T21996 |
169-177 |
RB |
denotes |
randomly |
T21997 |
178-186 |
VBN |
denotes |
selected |
T21998 |
187-191 |
IN |
denotes |
from |
T21999 |
192-195 |
DT |
denotes |
the |
T22000 |
196-199 |
NN |
denotes |
set |
T22001 |
200-202 |
IN |
denotes |
of |
T22002 |
203-206 |
DT |
denotes |
all |
T22003 |
207-212 |
NNS |
denotes |
genes |
T22004 |
213-221 |
VBN |
denotes |
detected |
T22005 |
222-224 |
IN |
denotes |
as |
T22006 |
225-234 |
VBN |
denotes |
expressed |
T22007 |
235-237 |
IN |
denotes |
in |
T22008 |
238-241 |
DT |
denotes |
the |
T22009 |
248-255 |
NNS |
denotes |
samples |
T22010 |
242-247 |
NN |
denotes |
liver |
T22011 |
255-256 |
. |
denotes |
. |
T22012 |
256-337 |
sentence |
denotes |
For each gene and for each marker we fitted each of the four models to the data. |
T22013 |
257-260 |
IN |
denotes |
For |
T22014 |
294-300 |
VBD |
denotes |
fitted |
T22015 |
261-265 |
DT |
denotes |
each |
T22016 |
266-270 |
NN |
denotes |
gene |
T22017 |
271-274 |
CC |
denotes |
and |
T22018 |
275-278 |
IN |
denotes |
for |
T22019 |
279-283 |
DT |
denotes |
each |
T22020 |
284-290 |
NN |
denotes |
marker |
T22021 |
291-293 |
PRP |
denotes |
we |
T22022 |
301-305 |
DT |
denotes |
each |
T22023 |
306-308 |
IN |
denotes |
of |
T22024 |
309-312 |
DT |
denotes |
the |
T22025 |
318-324 |
NNS |
denotes |
models |
T22026 |
313-317 |
CD |
denotes |
four |
T22027 |
325-327 |
IN |
denotes |
to |
T22028 |
328-331 |
DT |
denotes |
the |
T22029 |
332-336 |
NNS |
denotes |
data |
T22030 |
336-337 |
. |
denotes |
. |
T22031 |
337-539 |
sentence |
denotes |
We performed this same analysis on ten separate permutation sets in which each of the 3,000 gene expression trait vectors was permuted such that the correlation structure among the genes was preserved. |
T22032 |
338-340 |
PRP |
denotes |
We |
T22033 |
341-350 |
VBD |
denotes |
performed |
T22034 |
351-355 |
DT |
denotes |
this |
T22035 |
361-369 |
NN |
denotes |
analysis |
T22036 |
356-360 |
JJ |
denotes |
same |
T22037 |
370-372 |
IN |
denotes |
on |
T22038 |
373-376 |
CD |
denotes |
ten |
T22039 |
398-402 |
NNS |
denotes |
sets |
T22040 |
377-385 |
JJ |
denotes |
separate |
T22041 |
386-397 |
NN |
denotes |
permutation |
T22042 |
403-405 |
IN |
denotes |
in |
T22043 |
464-472 |
VBN |
denotes |
permuted |
T22044 |
406-411 |
WDT |
denotes |
which |
T22045 |
412-416 |
DT |
denotes |
each |
T22046 |
417-419 |
IN |
denotes |
of |
T22047 |
420-423 |
DT |
denotes |
the |
T22048 |
452-459 |
NNS |
denotes |
vectors |
T22049 |
424-429 |
CD |
denotes |
3,000 |
T22050 |
430-434 |
NN |
denotes |
gene |
T22051 |
435-445 |
NN |
denotes |
expression |
T22052 |
446-451 |
NN |
denotes |
trait |
T22053 |
460-463 |
VBD |
denotes |
was |
T22054 |
473-477 |
JJ |
denotes |
such |
T22055 |
529-538 |
VBN |
denotes |
preserved |
T22056 |
478-482 |
IN |
denotes |
that |
T22057 |
483-486 |
DT |
denotes |
the |
T22058 |
499-508 |
NN |
denotes |
structure |
T22059 |
487-498 |
NN |
denotes |
correlation |
T22060 |
509-514 |
IN |
denotes |
among |
T22061 |
515-518 |
DT |
denotes |
the |
T22062 |
519-524 |
NNS |
denotes |
genes |
T22063 |
525-528 |
VBD |
denotes |
was |
T22064 |
538-539 |
. |
denotes |
. |
T22065 |
539-791 |
sentence |
denotes |
The FDR for a given LOD score threshold was then computed as the ratio of the mean number of QTL detected in the permuted datasets (the mean taken over the ten permuted datasets) and the total number of QTL detected in the observed 3,000-gene dataset. |
T22066 |
540-543 |
DT |
denotes |
The |
T22067 |
544-547 |
NN |
denotes |
FDR |
T22068 |
589-597 |
VBN |
denotes |
computed |
T22069 |
548-551 |
IN |
denotes |
for |
T22070 |
552-553 |
DT |
denotes |
a |
T22071 |
570-579 |
NN |
denotes |
threshold |
T22072 |
554-559 |
JJ |
denotes |
given |
T22073 |
560-563 |
NN |
denotes |
LOD |
T22074 |
564-569 |
NN |
denotes |
score |
T22075 |
580-583 |
VBD |
denotes |
was |
T22076 |
584-588 |
RB |
denotes |
then |
T22077 |
598-600 |
IN |
denotes |
as |
T22078 |
601-604 |
DT |
denotes |
the |
T22079 |
605-610 |
NN |
denotes |
ratio |
T22080 |
611-613 |
IN |
denotes |
of |
T22081 |
614-617 |
DT |
denotes |
the |
T22082 |
623-629 |
NN |
denotes |
number |
T22083 |
618-622 |
JJ |
denotes |
mean |
T22084 |
630-632 |
IN |
denotes |
of |
T22085 |
633-636 |
NN |
denotes |
QTL |
T22086 |
637-645 |
VBN |
denotes |
detected |
T22087 |
646-648 |
IN |
denotes |
in |
T22088 |
649-652 |
DT |
denotes |
the |
T22089 |
662-670 |
NNS |
denotes |
datasets |
T22090 |
653-661 |
VBN |
denotes |
permuted |
T22091 |
671-672 |
-LRB- |
denotes |
( |
T22092 |
676-680 |
NN |
denotes |
mean |
T22093 |
672-675 |
DT |
denotes |
the |
T22094 |
681-686 |
VBN |
denotes |
taken |
T22095 |
687-691 |
IN |
denotes |
over |
T22096 |
692-695 |
DT |
denotes |
the |
T22097 |
709-717 |
NNS |
denotes |
datasets |
T22098 |
696-699 |
CD |
denotes |
ten |
T22099 |
700-708 |
VBN |
denotes |
permuted |
T22100 |
717-718 |
-RRB- |
denotes |
) |
T22101 |
719-722 |
CC |
denotes |
and |
T22102 |
723-726 |
DT |
denotes |
the |
T22103 |
733-739 |
NN |
denotes |
number |
T22104 |
727-732 |
JJ |
denotes |
total |
T22105 |
740-742 |
IN |
denotes |
of |
T22106 |
743-746 |
NN |
denotes |
QTL |
T22107 |
747-755 |
VBN |
denotes |
detected |
T22108 |
756-758 |
IN |
denotes |
in |
T22109 |
759-762 |
DT |
denotes |
the |
T22110 |
783-790 |
NN |
denotes |
dataset |
T22111 |
763-771 |
VBN |
denotes |
observed |
T22112 |
772-777 |
CD |
denotes |
3,000 |
T22113 |
778-782 |
NN |
denotes |
gene |
T22114 |
777-778 |
HYPH |
denotes |
- |
T22115 |
790-791 |
. |
denotes |
. |
T22116 |
791-918 |
sentence |
denotes |
We then generated ROC-like curves by varying the LOD score threshold, resulting in a range of FDRs (from 0% to more than 50%). |
T22117 |
792-794 |
PRP |
denotes |
We |
T22118 |
800-809 |
VBD |
denotes |
generated |
T22119 |
795-799 |
RB |
denotes |
then |
T22120 |
810-813 |
JJ |
denotes |
ROC |
T22121 |
814-818 |
JJ |
denotes |
like |
T22122 |
813-814 |
HYPH |
denotes |
- |
T22123 |
819-825 |
NNS |
denotes |
curves |
T22124 |
826-828 |
IN |
denotes |
by |
T22125 |
829-836 |
VBG |
denotes |
varying |
T22126 |
837-840 |
DT |
denotes |
the |
T22127 |
851-860 |
NN |
denotes |
threshold |
T22128 |
841-844 |
NN |
denotes |
LOD |
T22129 |
845-850 |
NN |
denotes |
score |
T22130 |
860-862 |
, |
denotes |
, |
T22131 |
862-871 |
VBG |
denotes |
resulting |
T22132 |
872-874 |
IN |
denotes |
in |
T22133 |
875-876 |
DT |
denotes |
a |
T22134 |
877-882 |
NN |
denotes |
range |
T22135 |
883-885 |
IN |
denotes |
of |
T22136 |
886-890 |
NNS |
denotes |
FDRs |
T22137 |
891-892 |
-LRB- |
denotes |
( |
T22138 |
900-902 |
IN |
denotes |
to |
T22139 |
892-896 |
IN |
denotes |
from |
T22140 |
897-898 |
CD |
denotes |
0 |
T22141 |
898-899 |
NN |
denotes |
% |
T22142 |
903-907 |
JJR |
denotes |
more |
T22143 |
913-915 |
CD |
denotes |
50 |
T22144 |
908-912 |
IN |
denotes |
than |
T22145 |
915-916 |
NN |
denotes |
% |
T22146 |
916-917 |
-RRB- |
denotes |
) |
T22147 |
917-918 |
. |
denotes |
. |
T22148 |
918-1114 |
sentence |
denotes |
To simplify this type of summary, we considered no more than one QTL per chromosome per gene expression trait by considering only the QTL with the max LOD score on each chromosome for each trait. |
T22149 |
919-921 |
TO |
denotes |
To |
T22150 |
922-930 |
VB |
denotes |
simplify |
T22151 |
956-966 |
VBD |
denotes |
considered |
T22152 |
931-935 |
DT |
denotes |
this |
T22153 |
936-940 |
NN |
denotes |
type |
T22154 |
941-943 |
IN |
denotes |
of |
T22155 |
944-951 |
NN |
denotes |
summary |
T22156 |
951-953 |
, |
denotes |
, |
T22157 |
953-955 |
PRP |
denotes |
we |
T22158 |
967-969 |
DT |
denotes |
no |
T22159 |
970-974 |
JJR |
denotes |
more |
T22160 |
975-979 |
IN |
denotes |
than |
T22161 |
980-983 |
CD |
denotes |
one |
T22162 |
984-987 |
NN |
denotes |
QTL |
T22163 |
988-991 |
IN |
denotes |
per |
T22164 |
992-1002 |
NN |
denotes |
chromosome |
T22165 |
1003-1006 |
IN |
denotes |
per |
T22166 |
1007-1011 |
NN |
denotes |
gene |
T22167 |
1012-1022 |
NN |
denotes |
expression |
T22168 |
1023-1028 |
NN |
denotes |
trait |
T22169 |
1029-1031 |
IN |
denotes |
by |
T22170 |
1032-1043 |
VBG |
denotes |
considering |
T22171 |
1044-1048 |
RB |
denotes |
only |
T22172 |
1053-1056 |
NN |
denotes |
QTL |
T22173 |
1049-1052 |
DT |
denotes |
the |
T22174 |
1057-1061 |
IN |
denotes |
with |
T22175 |
1062-1065 |
DT |
denotes |
the |
T22176 |
1074-1079 |
NN |
denotes |
score |
T22177 |
1066-1069 |
NN |
denotes |
max |
T22178 |
1070-1073 |
NN |
denotes |
LOD |
T22179 |
1080-1082 |
IN |
denotes |
on |
T22180 |
1083-1087 |
DT |
denotes |
each |
T22181 |
1088-1098 |
NN |
denotes |
chromosome |
T22182 |
1099-1102 |
IN |
denotes |
for |
T22183 |
1103-1107 |
DT |
denotes |
each |
T22184 |
1108-1113 |
NN |
denotes |
trait |
T22185 |
1113-1114 |
. |
denotes |
. |
T22186 |
1114-1386 |
sentence |
denotes |
The ROC curves for each of the four models are shown in Figure S1, with the black curve corresponding to Equation 2, the blue curve corresponding to Equation 4, the red curve corresponding to Equation 6, and the green curve corresponding to the model selection procedure. |
T22187 |
1115-1118 |
DT |
denotes |
The |
T22188 |
1123-1129 |
NNS |
denotes |
curves |
T22189 |
1119-1122 |
NN |
denotes |
ROC |
T22190 |
1162-1167 |
VBN |
denotes |
shown |
T22191 |
1130-1133 |
IN |
denotes |
for |
T22192 |
1134-1138 |
DT |
denotes |
each |
T22193 |
1139-1141 |
IN |
denotes |
of |
T22194 |
1142-1145 |
DT |
denotes |
the |
T22195 |
1151-1157 |
NNS |
denotes |
models |
T22196 |
1146-1150 |
CD |
denotes |
four |
T22197 |
1158-1161 |
VBP |
denotes |
are |
T22198 |
1168-1170 |
IN |
denotes |
in |
T22199 |
1171-1177 |
NN |
denotes |
Figure |
T22200 |
1178-1180 |
NN |
denotes |
S1 |
T22201 |
1180-1182 |
, |
denotes |
, |
T22202 |
1182-1186 |
IN |
denotes |
with |
T22203 |
1203-1216 |
VBG |
denotes |
corresponding |
T22204 |
1187-1190 |
DT |
denotes |
the |
T22205 |
1197-1202 |
NN |
denotes |
curve |
T22206 |
1191-1196 |
JJ |
denotes |
black |
T22207 |
1217-1219 |
IN |
denotes |
to |
T22208 |
1220-1228 |
NN |
denotes |
Equation |
T22209 |
1229-1230 |
CD |
denotes |
2 |
T22210 |
1230-1232 |
, |
denotes |
, |
T22211 |
1232-1235 |
DT |
denotes |
the |
T22212 |
1241-1246 |
NN |
denotes |
curve |
T22213 |
1236-1240 |
JJ |
denotes |
blue |
T22214 |
1247-1260 |
VBG |
denotes |
corresponding |
T22215 |
1261-1263 |
IN |
denotes |
to |
T22216 |
1264-1272 |
NN |
denotes |
Equation |
T22217 |
1273-1274 |
CD |
denotes |
4 |
T22218 |
1274-1276 |
, |
denotes |
, |
T22219 |
1276-1279 |
DT |
denotes |
the |
T22220 |
1284-1289 |
NN |
denotes |
curve |
T22221 |
1280-1283 |
JJ |
denotes |
red |
T22222 |
1290-1303 |
VBG |
denotes |
corresponding |
T22223 |
1304-1306 |
IN |
denotes |
to |
T22224 |
1307-1315 |
NN |
denotes |
Equation |
T22225 |
1316-1317 |
CD |
denotes |
6 |
T22226 |
1317-1319 |
, |
denotes |
, |
T22227 |
1319-1322 |
CC |
denotes |
and |
T22228 |
1323-1326 |
DT |
denotes |
the |
T22229 |
1333-1338 |
NN |
denotes |
curve |
T22230 |
1327-1332 |
JJ |
denotes |
green |
T22231 |
1339-1352 |
VBG |
denotes |
corresponding |
T22232 |
1353-1355 |
IN |
denotes |
to |
T22233 |
1356-1359 |
DT |
denotes |
the |
T22234 |
1376-1385 |
NN |
denotes |
procedure |
T22235 |
1360-1365 |
NN |
denotes |
model |
T22236 |
1366-1375 |
NN |
denotes |
selection |
T22237 |
1385-1386 |
. |
denotes |
. |
R6744 |
T21959 |
T21960 |
aux |
To,determine |
R6745 |
T21960 |
T21961 |
advcl |
determine,estimated |
R6746 |
T21962 |
T21963 |
dep |
which,is |
R6747 |
T21963 |
T21960 |
ccomp |
is,determine |
R6748 |
T21964 |
T21962 |
prep |
of,which |
R6749 |
T21965 |
T21966 |
det |
the,models |
R6750 |
T21966 |
T21964 |
pobj |
models,of |
R6751 |
T21967 |
T21966 |
nummod |
four,models |
R6752 |
T21968 |
T21969 |
punct |
(,6 |
R6753 |
T21969 |
T21966 |
parataxis |
6,models |
R6754 |
T21970 |
T21969 |
nmod |
Equations,6 |
R6755 |
T21971 |
T21969 |
nummod |
2,6 |
R6756 |
T21972 |
T21969 |
punct |
", ",6 |
R6757 |
T21973 |
T21969 |
nummod |
4,6 |
R6758 |
T21974 |
T21969 |
punct |
", ",6 |
R6759 |
T21975 |
T21969 |
punct |
", ",6 |
R6760 |
T21976 |
T21969 |
cc |
and,6 |
R6761 |
T21977 |
T21978 |
det |
the,selection |
R6762 |
T21978 |
T21969 |
conj |
selection,6 |
R6763 |
T21979 |
T21978 |
compound |
model,selection |
R6764 |
T21980 |
T21969 |
punct |
),6 |
R6765 |
T21981 |
T21963 |
acomp |
optimal,is |
R6766 |
T21982 |
T21961 |
punct |
", ",estimated |
R6767 |
T21983 |
T21961 |
nsubj |
we,estimated |
R6768 |
T21984 |
T21961 |
advmod |
empirically,estimated |
R6769 |
T21985 |
T21986 |
det |
the,FDR |
R6770 |
T21986 |
T21961 |
dobj |
FDR,estimated |
R6771 |
T21987 |
T21961 |
prep |
for,estimated |
R6772 |
T21988 |
T21989 |
det |
each,model |
R6773 |
T21989 |
T21987 |
pobj |
model,for |
R6774 |
T21990 |
T21961 |
prep |
over,estimated |
R6775 |
T21991 |
T21992 |
det |
a,set |
R6776 |
T21992 |
T21990 |
pobj |
set,over |
R6777 |
T21993 |
T21992 |
prep |
of,set |
R6778 |
T21994 |
T21995 |
nummod |
"3,000",genes |
R6779 |
T21995 |
T21993 |
pobj |
genes,of |
R6780 |
T21996 |
T21997 |
advmod |
randomly,selected |
R6781 |
T21997 |
T21995 |
acl |
selected,genes |
R6782 |
T21998 |
T21997 |
prep |
from,selected |
R6783 |
T21999 |
T22000 |
det |
the,set |
R6784 |
T22000 |
T21998 |
pobj |
set,from |
R6785 |
T22001 |
T22000 |
prep |
of,set |
R6786 |
T22002 |
T22003 |
det |
all,genes |
R6787 |
T22003 |
T22001 |
pobj |
genes,of |
R6788 |
T22004 |
T22000 |
acl |
detected,set |
R6789 |
T22005 |
T22006 |
mark |
as,expressed |
R6790 |
T22006 |
T22004 |
advcl |
expressed,detected |
R6791 |
T22007 |
T22006 |
prep |
in,expressed |
R6792 |
T22008 |
T22009 |
det |
the,samples |
R6793 |
T22009 |
T22007 |
pobj |
samples,in |
R6794 |
T22010 |
T22009 |
compound |
liver,samples |
R6795 |
T22011 |
T21961 |
punct |
.,estimated |
R6796 |
T22013 |
T22014 |
prep |
For,fitted |
R6797 |
T22015 |
T22016 |
det |
each,gene |
R6798 |
T22016 |
T22013 |
pobj |
gene,For |
R6799 |
T22017 |
T22013 |
cc |
and,For |
R6800 |
T22018 |
T22013 |
conj |
for,For |
R6801 |
T22019 |
T22020 |
det |
each,marker |
R6802 |
T22020 |
T22018 |
pobj |
marker,for |
R6803 |
T22021 |
T22014 |
nsubj |
we,fitted |
R6804 |
T22022 |
T22014 |
dobj |
each,fitted |
R6805 |
T22023 |
T22022 |
prep |
of,each |
R6806 |
T22024 |
T22025 |
det |
the,models |
R6807 |
T22025 |
T22023 |
pobj |
models,of |
R6808 |
T22026 |
T22025 |
nummod |
four,models |
R6809 |
T22027 |
T22014 |
prep |
to,fitted |
R6810 |
T22028 |
T22029 |
det |
the,data |
R6811 |
T22029 |
T22027 |
pobj |
data,to |
R6812 |
T22030 |
T22014 |
punct |
.,fitted |
R6813 |
T22032 |
T22033 |
nsubj |
We,performed |
R6814 |
T22034 |
T22035 |
det |
this,analysis |
R6815 |
T22035 |
T22033 |
dobj |
analysis,performed |
R6816 |
T22036 |
T22035 |
amod |
same,analysis |
R6817 |
T22037 |
T22033 |
prep |
on,performed |
R6818 |
T22038 |
T22039 |
nummod |
ten,sets |
R6819 |
T22039 |
T22037 |
pobj |
sets,on |
R6820 |
T22040 |
T22039 |
amod |
separate,sets |
R6821 |
T22041 |
T22039 |
compound |
permutation,sets |
R6822 |
T22042 |
T22043 |
prep |
in,permuted |
R6823 |
T22043 |
T22039 |
relcl |
permuted,sets |
R6824 |
T22044 |
T22042 |
pobj |
which,in |
R6825 |
T22045 |
T22043 |
nsubjpass |
each,permuted |
R6826 |
T22046 |
T22045 |
prep |
of,each |
R6827 |
T22047 |
T22048 |
det |
the,vectors |
R6828 |
T22048 |
T22046 |
pobj |
vectors,of |
R6829 |
T22049 |
T22048 |
nummod |
"3,000",vectors |
R6830 |
T22050 |
T22051 |
compound |
gene,expression |
R6831 |
T22051 |
T22048 |
compound |
expression,vectors |
R6832 |
T22052 |
T22048 |
compound |
trait,vectors |
R6833 |
T22053 |
T22043 |
auxpass |
was,permuted |
R6834 |
T22054 |
T22055 |
amod |
such,preserved |
R6835 |
T22055 |
T22043 |
ccomp |
preserved,permuted |
R6836 |
T22056 |
T22055 |
mark |
that,preserved |
R6837 |
T22057 |
T22058 |
det |
the,structure |
R6838 |
T22058 |
T22055 |
nsubjpass |
structure,preserved |
R6839 |
T22059 |
T22058 |
compound |
correlation,structure |
R6840 |
T22060 |
T22058 |
prep |
among,structure |
R6841 |
T22061 |
T22062 |
det |
the,genes |
R6842 |
T22062 |
T22060 |
pobj |
genes,among |
R6843 |
T22063 |
T22055 |
auxpass |
was,preserved |
R6844 |
T22064 |
T22033 |
punct |
.,performed |
R6845 |
T22066 |
T22067 |
det |
The,FDR |
R6846 |
T22067 |
T22068 |
nsubjpass |
FDR,computed |
R6847 |
T22069 |
T22067 |
prep |
for,FDR |
R6848 |
T22070 |
T22071 |
det |
a,threshold |
R6849 |
T22071 |
T22069 |
pobj |
threshold,for |
R6850 |
T22072 |
T22071 |
amod |
given,threshold |
R6851 |
T22073 |
T22071 |
compound |
LOD,threshold |
R6852 |
T22074 |
T22071 |
compound |
score,threshold |
R6853 |
T22075 |
T22068 |
auxpass |
was,computed |
R6854 |
T22076 |
T22068 |
advmod |
then,computed |
R6855 |
T22077 |
T22068 |
prep |
as,computed |
R6856 |
T22078 |
T22079 |
det |
the,ratio |
R6857 |
T22079 |
T22077 |
pobj |
ratio,as |
R6858 |
T22080 |
T22079 |
prep |
of,ratio |
R6859 |
T22081 |
T22082 |
det |
the,number |
R6860 |
T22082 |
T22080 |
pobj |
number,of |
R6861 |
T22083 |
T22082 |
amod |
mean,number |
R6862 |
T22084 |
T22082 |
prep |
of,number |
R6863 |
T22085 |
T22084 |
pobj |
QTL,of |
R6864 |
T22086 |
T22085 |
acl |
detected,QTL |
R6865 |
T22087 |
T22086 |
prep |
in,detected |
R6866 |
T22088 |
T22089 |
det |
the,datasets |
R6867 |
T22089 |
T22087 |
pobj |
datasets,in |
R6868 |
T22090 |
T22089 |
amod |
permuted,datasets |
R6869 |
T22091 |
T22092 |
punct |
(,mean |
R6870 |
T22092 |
T22082 |
parataxis |
mean,number |
R6871 |
T22093 |
T22092 |
det |
the,mean |
R6872 |
T22094 |
T22092 |
acl |
taken,mean |
R6873 |
T22095 |
T22094 |
prep |
over,taken |
R6874 |
T22096 |
T22097 |
det |
the,datasets |
R6875 |
T22097 |
T22095 |
pobj |
datasets,over |
R6876 |
T22098 |
T22097 |
nummod |
ten,datasets |
R6877 |
T22099 |
T22097 |
amod |
permuted,datasets |
R6878 |
T22100 |
T22092 |
punct |
),mean |
R6879 |
T22101 |
T22082 |
cc |
and,number |
R6880 |
T22102 |
T22103 |
det |
the,number |
R6881 |
T22103 |
T22082 |
conj |
number,number |
R6882 |
T22104 |
T22103 |
amod |
total,number |
R6883 |
T22105 |
T22103 |
prep |
of,number |
R6884 |
T22106 |
T22105 |
pobj |
QTL,of |
R6885 |
T22107 |
T22103 |
acl |
detected,number |
R6886 |
T22108 |
T22107 |
prep |
in,detected |
R6887 |
T22109 |
T22110 |
det |
the,dataset |
R6888 |
T22110 |
T22108 |
pobj |
dataset,in |
R6889 |
T22111 |
T22110 |
amod |
observed,dataset |
R6890 |
T22112 |
T22113 |
nummod |
"3,000",gene |
R6891 |
T22113 |
T22110 |
compound |
gene,dataset |
R6892 |
T22114 |
T22113 |
punct |
-,gene |
R6893 |
T22115 |
T22068 |
punct |
.,computed |
R6894 |
T22117 |
T22118 |
nsubj |
We,generated |
R6895 |
T22119 |
T22118 |
advmod |
then,generated |
R6896 |
T22120 |
T22121 |
amod |
ROC,like |
R6897 |
T22121 |
T22123 |
amod |
like,curves |
R6898 |
T22122 |
T22121 |
punct |
-,like |
R6899 |
T22123 |
T22118 |
dobj |
curves,generated |
R6900 |
T22124 |
T22118 |
prep |
by,generated |
R6901 |
T22125 |
T22124 |
pcomp |
varying,by |
R6902 |
T22126 |
T22127 |
det |
the,threshold |
R6903 |
T22127 |
T22125 |
dobj |
threshold,varying |
R6904 |
T22128 |
T22127 |
compound |
LOD,threshold |
R6905 |
T22129 |
T22127 |
compound |
score,threshold |
R6906 |
T22130 |
T22125 |
punct |
", ",varying |
R6907 |
T22131 |
T22125 |
advcl |
resulting,varying |
R6908 |
T22132 |
T22131 |
prep |
in,resulting |
R6909 |
T22133 |
T22134 |
det |
a,range |
R6910 |
T22134 |
T22132 |
pobj |
range,in |
R6911 |
T22135 |
T22134 |
prep |
of,range |
R6912 |
T22136 |
T22135 |
pobj |
FDRs,of |
R6913 |
T22137 |
T22138 |
punct |
(,to |
R6914 |
T22138 |
T22134 |
parataxis |
to,range |
R6915 |
T22139 |
T22138 |
prep |
from,to |
R6916 |
T22140 |
T22141 |
nummod |
0,% |
R6917 |
T22141 |
T22139 |
pobj |
%,from |
R6918 |
T22142 |
T22143 |
amod |
more,50 |
R6919 |
T22143 |
T22145 |
nummod |
50,% |
R6920 |
T22144 |
T22143 |
quantmod |
than,50 |
R6921 |
T22145 |
T22138 |
pobj |
%,to |
R6922 |
T22146 |
T22138 |
punct |
),to |
R6923 |
T22147 |
T22118 |
punct |
.,generated |
R6924 |
T22149 |
T22150 |
aux |
To,simplify |
R6925 |
T22150 |
T22151 |
advcl |
simplify,considered |
R6926 |
T22152 |
T22153 |
det |
this,type |
R6927 |
T22153 |
T22150 |
dobj |
type,simplify |
R6928 |
T22154 |
T22153 |
prep |
of,type |
R6929 |
T22155 |
T22154 |
pobj |
summary,of |
R6930 |
T22156 |
T22151 |
punct |
", ",considered |
R6931 |
T22157 |
T22151 |
nsubj |
we,considered |
R6932 |
T22158 |
T22159 |
det |
no,more |
R6933 |
T22159 |
T22151 |
dobj |
more,considered |
R6934 |
T22160 |
T22159 |
prep |
than,more |
R6935 |
T22161 |
T22162 |
nummod |
one,QTL |
R6936 |
T22162 |
T22160 |
pobj |
QTL,than |
R6937 |
T22163 |
T22162 |
prep |
per,QTL |
R6938 |
T22164 |
T22163 |
pobj |
chromosome,per |
R6939 |
T22165 |
T22164 |
prep |
per,chromosome |
R6940 |
T22166 |
T22167 |
compound |
gene,expression |
R6941 |
T22167 |
T22168 |
compound |
expression,trait |
R6942 |
T22168 |
T22165 |
pobj |
trait,per |
R6943 |
T22169 |
T22151 |
prep |
by,considered |
R6944 |
T22170 |
T22169 |
pcomp |
considering,by |
R6945 |
T22171 |
T22172 |
advmod |
only,QTL |
R6946 |
T22172 |
T22170 |
dobj |
QTL,considering |
R6947 |
T22173 |
T22172 |
det |
the,QTL |
R6948 |
T22174 |
T22170 |
prep |
with,considering |
R6949 |
T22175 |
T22176 |
det |
the,score |
R6950 |
T22176 |
T22174 |
pobj |
score,with |
R6951 |
T22177 |
T22176 |
compound |
max,score |
R6952 |
T22178 |
T22176 |
compound |
LOD,score |
R6953 |
T22179 |
T22176 |
prep |
on,score |
R6954 |
T22180 |
T22181 |
det |
each,chromosome |
R6955 |
T22181 |
T22179 |
pobj |
chromosome,on |
R6956 |
T22182 |
T22181 |
prep |
for,chromosome |
R6957 |
T22183 |
T22184 |
det |
each,trait |
R6958 |
T22184 |
T22182 |
pobj |
trait,for |
R6959 |
T22185 |
T22151 |
punct |
.,considered |
R6960 |
T22187 |
T22188 |
det |
The,curves |
R6961 |
T22188 |
T22190 |
nsubjpass |
curves,shown |
R6962 |
T22189 |
T22188 |
compound |
ROC,curves |
R6963 |
T22191 |
T22188 |
prep |
for,curves |
R6964 |
T22192 |
T22191 |
pobj |
each,for |
R6965 |
T22193 |
T22192 |
prep |
of,each |
R6966 |
T22194 |
T22195 |
det |
the,models |
R6967 |
T22195 |
T22193 |
pobj |
models,of |
R6968 |
T22196 |
T22195 |
nummod |
four,models |
R6969 |
T22197 |
T22190 |
auxpass |
are,shown |
R6970 |
T22198 |
T22190 |
prep |
in,shown |
R6971 |
T22199 |
T22200 |
compound |
Figure,S1 |
R6972 |
T22200 |
T22198 |
pobj |
S1,in |
R6973 |
T22201 |
T22190 |
punct |
", ",shown |
R6974 |
T22202 |
T22203 |
mark |
with,corresponding |
R6975 |
T22203 |
T22190 |
advcl |
corresponding,shown |
R6976 |
T22204 |
T22205 |
det |
the,curve |
R6977 |
T22205 |
T22203 |
nsubj |
curve,corresponding |
R6978 |
T22206 |
T22205 |
amod |
black,curve |
R6979 |
T22207 |
T22203 |
prep |
to,corresponding |
R6980 |
T22208 |
T22207 |
pobj |
Equation,to |
R6981 |
T22209 |
T22208 |
nummod |
2,Equation |
R6982 |
T22210 |
T22203 |
punct |
", ",corresponding |
R6983 |
T22211 |
T22212 |
det |
the,curve |
R6984 |
T22212 |
T22214 |
nsubj |
curve,corresponding |
R6985 |
T22213 |
T22212 |
amod |
blue,curve |
R6986 |
T22214 |
T22203 |
conj |
corresponding,corresponding |
R6987 |
T22215 |
T22214 |
prep |
to,corresponding |
R6988 |
T22216 |
T22215 |
pobj |
Equation,to |
R6989 |
T22217 |
T22216 |
nummod |
4,Equation |
R6990 |
T22218 |
T22214 |
punct |
", ",corresponding |
R6991 |
T22219 |
T22220 |
det |
the,curve |
R6992 |
T22220 |
T22222 |
nsubj |
curve,corresponding |
R6993 |
T22221 |
T22220 |
amod |
red,curve |
R6994 |
T22222 |
T22214 |
conj |
corresponding,corresponding |
R6995 |
T22223 |
T22222 |
prep |
to,corresponding |
R6996 |
T22224 |
T22223 |
pobj |
Equation,to |
R6997 |
T22225 |
T22224 |
nummod |
6,Equation |
R6998 |
T22226 |
T22222 |
punct |
", ",corresponding |
R6999 |
T22227 |
T22222 |
cc |
and,corresponding |
R7000 |
T22228 |
T22229 |
det |
the,curve |
R7001 |
T22229 |
T22231 |
nsubj |
curve,corresponding |
R7002 |
T22230 |
T22229 |
amod |
green,curve |
R7003 |
T22231 |
T22222 |
conj |
corresponding,corresponding |
R7004 |
T22232 |
T22231 |
prep |
to,corresponding |
R7005 |
T22233 |
T22234 |
det |
the,procedure |
R7006 |
T22234 |
T22232 |
pobj |
procedure,to |
R7007 |
T22235 |
T22236 |
compound |
model,selection |
R7008 |
T22236 |
T22234 |
compound |
selection,procedure |
R7009 |
T22237 |
T22190 |
punct |
.,shown |