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PMC:1359071 / 44420-44677 JSONTXT

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craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T21058 164-169 SO:0000704 denotes genes
T21059 208-213 SO:0000704 denotes genes
T21060 226-235 GO:0010467 denotes expressed
T21061 243-248 UBERON:0002107 denotes liver

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T21116 164-169 SO_EXT:0000704 denotes genes
T21117 208-213 SO_EXT:0000704 denotes genes
T21118 226-235 GO:0010467 denotes expressed
T21119 243-248 UBERON:0002107 denotes liver

craft-sa-dev

Id Subject Object Predicate Lexical cue
T21958 0-257 sentence denotes To determine which of the four models (Equations 2, 4, 6, and the model selection) is optimal, we empirically estimated the FDR for each model over a set of 3,000 genes randomly selected from the set of all genes detected as expressed in the liver samples.
T21959 1-3 TO denotes To
T21960 4-13 VB denotes determine
T21961 111-120 VBD denotes estimated
T21962 14-19 WDT denotes which
T21963 84-86 VBZ denotes is
T21964 20-22 IN denotes of
T21965 23-26 DT denotes the
T21966 32-38 NNS denotes models
T21967 27-31 CD denotes four
T21968 39-40 -LRB- denotes (
T21969 56-57 CD denotes 6
T21970 40-49 NNS denotes Equations
T21971 50-51 CD denotes 2
T21972 51-53 , denotes ,
T21973 53-54 CD denotes 4
T21974 54-56 , denotes ,
T21975 57-59 , denotes ,
T21976 59-62 CC denotes and
T21977 63-66 DT denotes the
T21978 73-82 NN denotes selection
T21979 67-72 NN denotes model
T21980 82-83 -RRB- denotes )
T21981 87-94 JJ denotes optimal
T21982 94-96 , denotes ,
T21983 96-98 PRP denotes we
T21984 99-110 RB denotes empirically
T21985 121-124 DT denotes the
T21986 125-128 NN denotes FDR
T21987 129-132 IN denotes for
T21988 133-137 DT denotes each
T21989 138-143 NN denotes model
T21990 144-148 IN denotes over
T21991 149-150 DT denotes a
T21992 151-154 NN denotes set
T21993 155-157 IN denotes of
T21994 158-163 CD denotes 3,000
T21995 164-169 NNS denotes genes
T21996 170-178 RB denotes randomly
T21997 179-187 VBN denotes selected
T21998 188-192 IN denotes from
T21999 193-196 DT denotes the
T22000 197-200 NN denotes set
T22001 201-203 IN denotes of
T22002 204-207 DT denotes all
T22003 208-213 NNS denotes genes
T22004 214-222 VBN denotes detected
T22005 223-225 IN denotes as
T22006 226-235 VBN denotes expressed
T22007 236-238 IN denotes in
T22008 239-242 DT denotes the
T22009 249-256 NNS denotes samples
T22010 243-248 NN denotes liver
T22011 256-257 . denotes .
R6744 T21959 T21960 aux To,determine
R6745 T21960 T21961 advcl determine,estimated
R6746 T21962 T21963 dep which,is
R6747 T21963 T21960 ccomp is,determine
R6748 T21964 T21962 prep of,which
R6749 T21965 T21966 det the,models
R6750 T21966 T21964 pobj models,of
R6751 T21967 T21966 nummod four,models
R6752 T21968 T21969 punct (,6
R6753 T21969 T21966 parataxis 6,models
R6754 T21970 T21969 nmod Equations,6
R6755 T21971 T21969 nummod 2,6
R6756 T21972 T21969 punct ", ",6
R6757 T21973 T21969 nummod 4,6
R6758 T21974 T21969 punct ", ",6
R6759 T21975 T21969 punct ", ",6
R6760 T21976 T21969 cc and,6
R6761 T21977 T21978 det the,selection
R6762 T21978 T21969 conj selection,6
R6763 T21979 T21978 compound model,selection
R6764 T21980 T21969 punct ),6
R6765 T21981 T21963 acomp optimal,is
R6766 T21982 T21961 punct ", ",estimated
R6767 T21983 T21961 nsubj we,estimated
R6768 T21984 T21961 advmod empirically,estimated
R6769 T21985 T21986 det the,FDR
R6770 T21986 T21961 dobj FDR,estimated
R6771 T21987 T21961 prep for,estimated
R6772 T21988 T21989 det each,model
R6773 T21989 T21987 pobj model,for
R6774 T21990 T21961 prep over,estimated
R6775 T21991 T21992 det a,set
R6776 T21992 T21990 pobj set,over
R6777 T21993 T21992 prep of,set
R6778 T21994 T21995 nummod "3,000",genes
R6779 T21995 T21993 pobj genes,of
R6780 T21996 T21997 advmod randomly,selected
R6781 T21997 T21995 acl selected,genes
R6782 T21998 T21997 prep from,selected
R6783 T21999 T22000 det the,set
R6784 T22000 T21998 pobj set,from
R6785 T22001 T22000 prep of,set
R6786 T22002 T22003 det all,genes
R6787 T22003 T22001 pobj genes,of
R6788 T22004 T22000 acl detected,set
R6789 T22005 T22006 mark as,expressed
R6790 T22006 T22004 advcl expressed,detected
R6791 T22007 T22006 prep in,expressed
R6792 T22008 T22009 det the,samples
R6793 T22009 T22007 pobj samples,in
R6794 T22010 T22009 compound liver,samples
R6795 T22011 T21961 punct .,estimated