PMC:1359071 / 23984-24274
Annnotations
craft-ca-core-dev
Below, discontinuous spans are shown in the chain model. You can change it to the bag model.
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T10354 | 104-109 | UBERON:0002107 | denotes | liver |
| T10355 | 110-114 | SO:0000704 | denotes | gene |
| T10356 | 110-125 | GO:0010467 | denotes | gene expression |
| T10357 | 194-199 | SO:0000704 | denotes | genes |
| T10358 | 228-238 | GO:0065007 | denotes | controlled |
| T10359 | 248-255 | UBERON:0000479 | denotes | tissues |
craft-ca-core-ex-dev
Below, discontinuous spans are shown in the chain model. You can change it to the bag model.
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T10457 | 104-109 | UBERON:0002107 | denotes | liver |
| T10458 | 110-114 | SO_EXT:0000704 | denotes | gene |
| T10459 | 110-125 | GO:0010467 | denotes | gene expression |
| T10460 | 164-173 | GO_PATO_EXT:biological_localization_process_or_quality | denotes | localized |
| T10461 | 194-199 | SO_EXT:0000704 | denotes | genes |
| T10462 | 228-238 | GO:0065007 | denotes | controlled |
| T10463 | 248-255 | UBERON:0000479 | denotes | tissues |
craft-sa-dev
| Id | Subject | Object | Predicate | Lexical cue |
|---|---|---|---|---|
| T11076 | 0-290 | sentence | denotes | As an approach to this problem, we hypothesized that those cQTLs that are most closely associated with liver gene expression would show an overrepresentation of colocalized eQTL for correlated genes, while those loci primarily controlled by other tissues would not have shown this pattern. |
| T11077 | 1-3 | IN | denotes | As |
| T11078 | 36-48 | VBD | denotes | hypothesized |
| T11079 | 4-6 | DT | denotes | an |
| T11080 | 7-15 | NN | denotes | approach |
| T11081 | 16-18 | IN | denotes | to |
| T11082 | 19-23 | DT | denotes | this |
| T11083 | 24-31 | NN | denotes | problem |
| T11084 | 31-33 | , | denotes | , |
| T11085 | 33-35 | PRP | denotes | we |
| T11086 | 49-53 | IN | denotes | that |
| T11087 | 132-136 | VB | denotes | show |
| T11088 | 54-59 | DT | denotes | those |
| T11089 | 60-65 | NNS | denotes | cQTLs |
| T11090 | 66-70 | WDT | denotes | that |
| T11091 | 88-98 | VBN | denotes | associated |
| T11092 | 71-74 | VBP | denotes | are |
| T11093 | 75-79 | RBS | denotes | most |
| T11094 | 80-87 | RB | denotes | closely |
| T11095 | 99-103 | IN | denotes | with |
| T11096 | 104-109 | NN | denotes | liver |
| T11097 | 115-125 | NN | denotes | expression |
| T11098 | 110-114 | NN | denotes | gene |
| T11099 | 126-131 | MD | denotes | would |
| T11100 | 137-139 | DT | denotes | an |
| T11101 | 140-158 | NN | denotes | overrepresentation |
| T11102 | 159-161 | IN | denotes | of |
| T11103 | 162-173 | VBN | denotes | colocalized |
| T11104 | 174-178 | NN | denotes | eQTL |
| T11105 | 179-182 | IN | denotes | for |
| T11106 | 183-193 | VBN | denotes | correlated |
| T11107 | 194-199 | NNS | denotes | genes |
| T11108 | 199-201 | , | denotes | , |
| T11109 | 201-206 | IN | denotes | while |
| T11110 | 271-276 | VBN | denotes | shown |
| T11111 | 207-212 | DT | denotes | those |
| T11112 | 213-217 | NNS | denotes | loci |
| T11113 | 218-227 | RB | denotes | primarily |
| T11114 | 228-238 | VBN | denotes | controlled |
| T11115 | 239-241 | IN | denotes | by |
| T11116 | 242-247 | JJ | denotes | other |
| T11117 | 248-255 | NNS | denotes | tissues |
| T11118 | 256-261 | MD | denotes | would |
| T11119 | 262-265 | RB | denotes | not |
| T11120 | 266-270 | VB | denotes | have |
| T11121 | 277-281 | DT | denotes | this |
| T11122 | 282-289 | NN | denotes | pattern |
| T11123 | 289-290 | . | denotes | . |
| R3319 | T11077 | T11078 | prep | As,hypothesized |
| R3320 | T11079 | T11080 | det | an,approach |
| R3321 | T11080 | T11077 | pobj | approach,As |
| R3322 | T11081 | T11080 | prep | to,approach |
| R3323 | T11082 | T11083 | det | this,problem |
| R3324 | T11083 | T11081 | pobj | problem,to |
| R3325 | T11084 | T11078 | punct | ", ",hypothesized |
| R3326 | T11085 | T11078 | nsubj | we,hypothesized |
| R3327 | T11086 | T11087 | mark | that,show |
| R3328 | T11087 | T11078 | ccomp | show,hypothesized |
| R3329 | T11088 | T11089 | det | those,cQTLs |
| R3330 | T11089 | T11087 | nsubj | cQTLs,show |
| R3331 | T11090 | T11091 | dep | that,associated |
| R3332 | T11091 | T11089 | relcl | associated,cQTLs |
| R3333 | T11092 | T11091 | auxpass | are,associated |
| R3334 | T11093 | T11094 | advmod | most,closely |
| R3335 | T11094 | T11091 | advmod | closely,associated |
| R3336 | T11095 | T11091 | prep | with,associated |
| R3337 | T11096 | T11097 | compound | liver,expression |
| R3338 | T11097 | T11095 | pobj | expression,with |
| R3339 | T11098 | T11097 | compound | gene,expression |
| R3340 | T11099 | T11087 | aux | would,show |
| R3341 | T11100 | T11101 | det | an,overrepresentation |
| R3342 | T11101 | T11087 | dobj | overrepresentation,show |
| R3343 | T11102 | T11101 | prep | of,overrepresentation |
| R3344 | T11103 | T11104 | amod | colocalized,eQTL |
| R3345 | T11104 | T11102 | pobj | eQTL,of |
| R3346 | T11105 | T11101 | prep | for,overrepresentation |
| R3347 | T11106 | T11107 | amod | correlated,genes |
| R3348 | T11107 | T11105 | pobj | genes,for |
| R3349 | T11108 | T11087 | punct | ", ",show |
| R3350 | T11109 | T11110 | mark | while,shown |
| R3351 | T11110 | T11087 | advcl | shown,show |
| R3352 | T11111 | T11112 | det | those,loci |
| R3353 | T11112 | T11110 | nsubj | loci,shown |
| R3354 | T11113 | T11114 | advmod | primarily,controlled |
| R3355 | T11114 | T11112 | acl | controlled,loci |
| R3356 | T11115 | T11114 | agent | by,controlled |
| R3357 | T11116 | T11117 | amod | other,tissues |
| R3358 | T11117 | T11115 | pobj | tissues,by |
| R3359 | T11118 | T11110 | aux | would,shown |
| R3360 | T11119 | T11110 | neg | not,shown |
| R3361 | T11120 | T11110 | aux | have,shown |
| R3362 | T11121 | T11122 | det | this,pattern |
| R3363 | T11122 | T11110 | dobj | pattern,shown |
| R3364 | T11123 | T11078 | punct | .,hypothesized |