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PMC:1359071 / 20180-21189 JSONTXT

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craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T10308 150-157 UBERON:0000991 denotes gonadal
T10309 177-187 SO:0000673 denotes transcript
T10310 232-236 SO:0000704 denotes gene
T10311 251-255 SO:0000704 denotes gene
T10312 276-280 SO:0000704 denotes gene
T10313 344-348 SO:0000704 denotes gene
T10314 707-712 SO:0000704 denotes genes
T10315 748-755 UBERON:0000991 denotes gonadal
T10316 775-780 SO:0000704 denotes genes
T10317 814-818 SO:0000704 denotes gene
T10318 889-896 SO:0000704 denotes genetic
T10319 897-907 GO:0065007 denotes regulation
T10320 946-951 SO:0000704 denotes genes
T10321 968-975 UBERON:0000991 denotes gonadal

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T10392 23-39 CHEBI_SO_EXT:oligonucleotide denotes oligonucleotides
T10393 150-157 UBERON:0000991 denotes gonadal
T10394 158-161 CHEBI_UBERON_EXT:triglyceride_or_adipose_tissue denotes fat
T10395 177-187 SO_EXT:0000673 denotes transcript
T10396 232-236 SO_EXT:0000704 denotes gene
T10397 251-255 SO_EXT:0000704 denotes gene
T10398 276-280 SO_EXT:0000704 denotes gene
T10399 344-348 SO_EXT:0000704 denotes gene
T10400 707-712 SO_EXT:0000704 denotes genes
T10401 748-755 UBERON:0000991 denotes gonadal
T10402 756-759 CHEBI_UBERON_EXT:triglyceride_or_adipose_tissue denotes fat
T10403 775-780 SO_EXT:0000704 denotes genes
T10404 814-818 SO_EXT:0000704 denotes gene
T10405 889-896 SO_EXT:0000704 denotes genetic
T10406 897-907 GO:0065007 denotes regulation
T10407 946-951 SO_EXT:0000704 denotes genes
T10408 968-975 UBERON:0000991 denotes gonadal
T10409 976-979 CHEBI_UBERON_EXT:triglyceride_or_adipose_tissue denotes fat

craft-sa-dev

Id Subject Object Predicate Lexical cue
T10531 0-3 IN denotes For
T10532 69-77 VBD denotes computed
T10533 4-8 DT denotes each
T10534 9-11 IN denotes of
T10535 12-15 DT denotes the
T10536 23-39 NNS denotes oligonucleotides
T10537 16-22 CD denotes 23,574
T10538 40-51 VBN denotes represented
T10539 52-54 IN denotes on
T10540 55-58 DT denotes the
T10541 59-64 NN denotes array
T10542 64-66 , denotes ,
T10543 66-68 PRP denotes we
T10544 78-79 DT denotes a
T10545 98-106 NN denotes analysis
T10546 80-86 JJ denotes linear
T10547 87-97 NN denotes regression
T10548 107-109 TO denotes to
T10549 110-114 VB denotes test
T10550 115-118 IN denotes for
T10551 119-130 NN denotes association
T10552 131-138 IN denotes between
T10553 139-142 DT denotes the
T10554 143-148 NN denotes trait
T10555 149-150 `` denotes “
T10556 150-157 JJ denotes gonadal
T10557 162-166 NN denotes mass
T10558 158-161 NN denotes fat
T10559 166-167 '' denotes ”
T10560 168-171 CC denotes and
T10561 172-176 DT denotes each
T10562 198-205 NN denotes measure
T10563 177-187 NN denotes transcript
T10564 188-197 NN denotes abundance
T10565 205-207 , denotes ,
T10566 207-220 VBG denotes incorporating
T10567 221-224 DT denotes the
T10568 225-230 NNS denotes terms
T10569 231-232 `` denotes “
T10570 232-236 NN denotes gene
T10571 236-237 , denotes ,
T10572 237-238 '' denotes ”
T10573 240-243 NN denotes sex
T10574 239-240 `` denotes “
T10575 243-244 , denotes ,
T10576 244-245 '' denotes ”
T10577 246-249 CC denotes and
T10578 250-251 `` denotes “
T10579 251-255 NN denotes gene
T10580 255-256 HYPH denotes -
T10581 256-258 IN denotes by
T10582 258-259 HYPH denotes -
T10583 259-262 NN denotes sex
T10584 262-263 , denotes ,
T10585 263-264 '' denotes ”
T10586 265-270 WRB denotes where
T10587 299-304 VBZ denotes tests
T10588 271-274 DT denotes the
T10589 289-298 NN denotes parameter
T10590 275-276 `` denotes “
T10591 276-280 NN denotes gene
T10592 280-281 HYPH denotes -
T10593 281-283 IN denotes by
T10594 283-284 HYPH denotes -
T10595 284-287 NN denotes sex
T10596 287-288 '' denotes ”
T10597 305-308 IN denotes for
T10598 309-312 NN denotes sex
T10599 313-321 JJ denotes specific
T10600 312-313 HYPH denotes -
T10601 322-333 NN denotes correlation
T10602 334-341 IN denotes between
T10603 342-343 DT denotes a
T10604 344-348 NN denotes gene
T10605 349-352 CC denotes and
T10606 353-356 DT denotes the
T10607 357-362 NN denotes trait
T10608 362-363 . denotes .
T10609 363-534 sentence denotes As before, a stepwise regression procedure was used to determine if the addition of the interaction term significantly improved the model fit (see Materials and Methods).
T10610 364-366 IN denotes As
T10611 411-415 VBN denotes used
T10612 367-373 RB denotes before
T10613 373-375 , denotes ,
T10614 375-376 DT denotes a
T10615 397-406 NN denotes procedure
T10616 377-385 NN denotes stepwise
T10617 386-396 NN denotes regression
T10618 407-410 VBD denotes was
T10619 416-418 TO denotes to
T10620 419-428 VB denotes determine
T10621 429-431 IN denotes if
T10622 483-491 VBD denotes improved
T10623 432-435 DT denotes the
T10624 436-444 NN denotes addition
T10625 445-447 IN denotes of
T10626 448-451 DT denotes the
T10627 464-468 NN denotes term
T10628 452-463 NN denotes interaction
T10629 469-482 RB denotes significantly
T10630 492-495 DT denotes the
T10631 502-505 NN denotes fit
T10632 496-501 NN denotes model
T10633 506-507 -LRB- denotes (
T10634 507-510 VB denotes see
T10635 511-520 NNS denotes Materials
T10636 521-524 CC denotes and
T10637 525-532 NNS denotes Methods
T10638 532-533 -RRB- denotes )
T10639 533-534 . denotes .
T10640 534-593 sentence denotes Multiple testing was addressed by controlling for the FDR.
T10641 535-543 JJ denotes Multiple
T10642 544-551 NN denotes testing
T10643 556-565 VBN denotes addressed
T10644 552-555 VBD denotes was
T10645 566-568 IN denotes by
T10646 569-580 VBG denotes controlling
T10647 581-584 IN denotes for
T10648 585-588 DT denotes the
T10649 589-592 NN denotes FDR
T10650 592-593 . denotes .
T10651 593-685 sentence denotes Distribution of the p-values obtained from these 23,574 correlations is shown in Figure 5A.
T10652 594-606 NN denotes Distribution
T10653 666-671 VBN denotes shown
T10654 607-609 IN denotes of
T10655 610-613 DT denotes the
T10656 616-622 NNS denotes values
T10657 614-615 NN denotes p
T10658 615-616 HYPH denotes -
T10659 623-631 VBN denotes obtained
T10660 632-636 IN denotes from
T10661 637-642 DT denotes these
T10662 650-662 NNS denotes correlations
T10663 643-649 CD denotes 23,574
T10664 663-665 VBZ denotes is
T10665 672-674 IN denotes in
T10666 675-681 NN denotes Figure
T10667 682-684 NN denotes 5A
T10668 684-685 . denotes .
T10669 685-765 sentence denotes At FDR = 0.01, 4,613 genes were significantly correlated with gonadal fat mass.
T10670 686-688 IN denotes At
T10671 732-742 VBN denotes correlated
T10672 689-692 NN denotes FDR
T10673 695-699 CD denotes 0.01
T10674 693-694 SYM denotes =
T10675 699-701 , denotes ,
T10676 701-706 CD denotes 4,613
T10677 707-712 NNS denotes genes
T10678 713-717 VBD denotes were
T10679 718-731 RB denotes significantly
T10680 743-747 IN denotes with
T10681 748-755 JJ denotes gonadal
T10682 760-764 NN denotes mass
T10683 756-759 NN denotes fat
T10684 764-765 . denotes .
T10685 765-922 sentence denotes Of these genes, 4,524 (98%) showed significant “gene-by-sex” effects, supporting the high degree of sex specificity in the genetic regulation of this trait.
T10686 766-768 IN denotes Of
T10687 794-800 VBD denotes showed
T10688 769-774 DT denotes these
T10689 775-780 NNS denotes genes
T10690 780-782 , denotes ,
T10691 782-787 CD denotes 4,524
T10692 788-789 -LRB- denotes (
T10693 791-792 NN denotes %
T10694 789-791 CD denotes 98
T10695 792-793 -RRB- denotes )
T10696 801-812 JJ denotes significant
T10697 827-834 NNS denotes effects
T10698 813-814 `` denotes “
T10699 814-818 NN denotes gene
T10700 818-819 HYPH denotes -
T10701 819-821 IN denotes by
T10702 821-822 HYPH denotes -
T10703 822-825 NN denotes sex
T10704 825-826 '' denotes ”
T10705 834-836 , denotes ,
T10706 836-846 VBG denotes supporting
T10707 847-850 DT denotes the
T10708 856-862 NN denotes degree
T10709 851-855 JJ denotes high
T10710 863-865 IN denotes of
T10711 866-869 NN denotes sex
T10712 870-881 NN denotes specificity
T10713 882-884 IN denotes in
T10714 885-888 DT denotes the
T10715 897-907 NN denotes regulation
T10716 889-896 JJ denotes genetic
T10717 908-910 IN denotes of
T10718 911-915 DT denotes this
T10719 916-921 NN denotes trait
T10720 921-922 . denotes .
T10721 922-1009 sentence denotes A complete list of all genes correlated with gonadal fat mass is provided in Table S2.
T10722 923-924 DT denotes A
T10723 934-938 NN denotes list
T10724 925-933 JJ denotes complete
T10725 988-996 VBN denotes provided
T10726 939-941 IN denotes of
T10727 942-945 DT denotes all
T10728 946-951 NNS denotes genes
T10729 952-962 VBN denotes correlated
T10730 963-967 IN denotes with
T10731 968-975 JJ denotes gonadal
T10732 980-984 NN denotes mass
T10733 976-979 NN denotes fat
T10734 985-987 VBZ denotes is
T10735 997-999 IN denotes in
T10736 1000-1005 NN denotes Table
T10737 1006-1008 NN denotes S2
T10738 1008-1009 . denotes .
R2809 T10531 T10532 prep For,computed
R2810 T10533 T10531 pobj each,For
R2811 T10534 T10533 prep of,each
R2812 T10535 T10536 det the,oligonucleotides
R2813 T10536 T10534 pobj oligonucleotides,of
R2814 T10537 T10536 nummod "23,574",oligonucleotides
R2815 T10538 T10536 acl represented,oligonucleotides
R2816 T10539 T10538 prep on,represented
R2817 T10540 T10541 det the,array
R2818 T10541 T10539 pobj array,on
R2819 T10542 T10532 punct ", ",computed
R2820 T10543 T10532 nsubj we,computed
R2821 T10544 T10545 det a,analysis
R2822 T10545 T10532 dobj analysis,computed
R2823 T10546 T10547 amod linear,regression
R2824 T10547 T10545 compound regression,analysis
R2825 T10548 T10549 aux to,test
R2826 T10549 T10532 advcl test,computed
R2827 T10550 T10549 prep for,test
R2828 T10551 T10550 pobj association,for
R2829 T10552 T10551 prep between,association
R2830 T10553 T10554 det the,trait
R2831 T10554 T10552 pobj trait,between
R2832 T10555 T10554 punct “,trait
R2833 T10556 T10557 amod gonadal,mass
R2834 T10557 T10554 appos mass,trait
R2835 T10558 T10557 compound fat,mass
R2836 T10559 T10554 punct ”,trait
R2837 T10560 T10554 cc and,trait
R2838 T10561 T10562 det each,measure
R2839 T10562 T10554 conj measure,trait
R2840 T10563 T10564 compound transcript,abundance
R2841 T10564 T10562 compound abundance,measure
R2842 T10565 T10549 punct ", ",test
R2843 T10566 T10549 advcl incorporating,test
R2844 T10567 T10568 det the,terms
R2845 T10568 T10566 dobj terms,incorporating
R2846 T10569 T10568 punct “,terms
R2847 T10570 T10568 appos gene,terms
R2848 T10571 T10570 punct ",",gene
R2849 T10572 T10573 punct ”,sex
R2850 T10573 T10570 conj sex,gene
R2851 T10574 T10573 punct “,sex
R2852 T10575 T10573 punct ",",sex
R2853 T10576 T10573 punct ”,sex
R2854 T10577 T10573 cc and,sex
R2855 T10578 T10579 punct “,gene
R2856 T10579 T10573 conj gene,sex
R2857 T10580 T10579 punct -,gene
R2858 T10581 T10579 prep by,gene
R2859 T10582 T10581 punct -,by
R2860 T10583 T10581 pobj sex,by
R2861 T10584 T10566 punct ",",incorporating
R2862 T10585 T10566 punct ”,incorporating
R2863 T10586 T10587 advmod where,tests
R2864 T10587 T10566 advcl tests,incorporating
R2865 T10588 T10589 det the,parameter
R2866 T10589 T10587 nsubj parameter,tests
R2867 T10590 T10589 punct “,parameter
R2868 T10591 T10589 nmod gene,parameter
R2869 T10592 T10591 punct -,gene
R2870 T10593 T10591 prep by,gene
R2871 T10594 T10593 punct -,by
R2872 T10595 T10593 pobj sex,by
R2873 T10596 T10589 punct ”,parameter
R2874 T10597 T10587 prep for,tests
R2875 T10598 T10599 npadvmod sex,specific
R2876 T10599 T10601 amod specific,correlation
R2877 T10600 T10599 punct -,specific
R2878 T10601 T10597 pobj correlation,for
R2879 T10602 T10601 prep between,correlation
R2880 T10603 T10604 det a,gene
R2881 T10604 T10602 pobj gene,between
R2882 T10605 T10604 cc and,gene
R2883 T10606 T10607 det the,trait
R2884 T10607 T10604 conj trait,gene
R2885 T10608 T10532 punct .,computed
R2886 T10610 T10611 prep As,used
R2887 T10612 T10610 pcomp before,As
R2888 T10613 T10611 punct ", ",used
R2889 T10614 T10615 det a,procedure
R2890 T10615 T10611 nsubjpass procedure,used
R2891 T10616 T10615 compound stepwise,procedure
R2892 T10617 T10615 compound regression,procedure
R2893 T10618 T10611 auxpass was,used
R2894 T10619 T10620 aux to,determine
R2895 T10620 T10611 advcl determine,used
R2896 T10621 T10622 mark if,improved
R2897 T10622 T10620 ccomp improved,determine
R2898 T10623 T10624 det the,addition
R2899 T10624 T10622 nsubj addition,improved
R2900 T10625 T10624 prep of,addition
R2901 T10626 T10627 det the,term
R2902 T10627 T10625 pobj term,of
R2903 T10628 T10627 compound interaction,term
R2904 T10629 T10622 advmod significantly,improved
R2905 T10630 T10631 det the,fit
R2906 T10631 T10622 dobj fit,improved
R2907 T10632 T10631 compound model,fit
R2908 T10633 T10634 punct (,see
R2909 T10634 T10611 parataxis see,used
R2910 T10635 T10634 dobj Materials,see
R2911 T10636 T10635 cc and,Materials
R2912 T10637 T10635 conj Methods,Materials
R2913 T10638 T10634 punct ),see
R2914 T10639 T10611 punct .,used
R2915 T10641 T10642 amod Multiple,testing
R2916 T10642 T10643 nsubjpass testing,addressed
R2917 T10644 T10643 auxpass was,addressed
R2918 T10645 T10643 prep by,addressed
R2919 T10646 T10645 pcomp controlling,by
R2920 T10647 T10646 prep for,controlling
R2921 T10648 T10649 det the,FDR
R2922 T10649 T10647 pobj FDR,for
R2923 T10650 T10643 punct .,addressed
R2924 T10652 T10653 nsubjpass Distribution,shown
R2925 T10654 T10652 prep of,Distribution
R2926 T10655 T10656 det the,values
R2927 T10656 T10654 pobj values,of
R2928 T10657 T10656 compound p,values
R2929 T10658 T10656 punct -,values
R2930 T10659 T10656 acl obtained,values
R2931 T10660 T10659 prep from,obtained
R2932 T10661 T10662 det these,correlations
R2933 T10662 T10660 pobj correlations,from
R2934 T10663 T10662 nummod "23,574",correlations
R2935 T10664 T10653 auxpass is,shown
R2936 T10665 T10653 prep in,shown
R2937 T10666 T10667 compound Figure,5A
R2938 T10667 T10665 pobj 5A,in
R2939 T10668 T10653 punct .,shown
R2940 T10670 T10671 prep At,correlated
R2941 T10672 T10673 nsubj FDR,0.01
R2942 T10673 T10670 pcomp 0.01,At
R2943 T10674 T10673 punct =,0.01
R2944 T10675 T10671 punct ", ",correlated
R2945 T10676 T10677 nummod "4,613",genes
R2946 T10677 T10671 nsubjpass genes,correlated
R2947 T10678 T10671 auxpass were,correlated
R2948 T10679 T10671 advmod significantly,correlated
R2949 T10680 T10671 prep with,correlated
R2950 T10681 T10682 amod gonadal,mass
R2951 T10682 T10680 pobj mass,with
R2952 T10683 T10682 compound fat,mass
R2953 T10684 T10671 punct .,correlated
R2954 T10686 T10687 prep Of,showed
R2955 T10688 T10689 det these,genes
R2956 T10689 T10686 pobj genes,Of
R2957 T10690 T10687 punct ", ",showed
R2958 T10691 T10687 nsubj "4,524",showed
R2959 T10692 T10693 punct (,%
R2960 T10693 T10691 parataxis %,"4,524"
R2961 T10694 T10693 nummod 98,%
R2962 T10695 T10693 punct ),%
R2963 T10696 T10697 amod significant,effects
R2964 T10697 T10687 dobj effects,showed
R2965 T10698 T10697 punct “,effects
R2966 T10699 T10697 nmod gene,effects
R2967 T10700 T10699 punct -,gene
R2968 T10701 T10699 prep by,gene
R2969 T10702 T10701 punct -,by
R2970 T10703 T10701 pobj sex,by
R2971 T10704 T10697 punct ”,effects
R2972 T10705 T10687 punct ", ",showed
R2973 T10706 T10687 advcl supporting,showed
R2974 T10707 T10708 det the,degree
R2975 T10708 T10706 dobj degree,supporting
R2976 T10709 T10708 amod high,degree
R2977 T10710 T10708 prep of,degree
R2978 T10711 T10712 compound sex,specificity
R2979 T10712 T10710 pobj specificity,of
R2980 T10713 T10708 prep in,degree
R2981 T10714 T10715 det the,regulation
R2982 T10715 T10713 pobj regulation,in
R2983 T10716 T10715 amod genetic,regulation
R2984 T10717 T10715 prep of,regulation
R2985 T10718 T10719 det this,trait
R2986 T10719 T10717 pobj trait,of
R2987 T10720 T10687 punct .,showed
R2988 T10722 T10723 det A,list
R2989 T10723 T10725 nsubjpass list,provided
R2990 T10724 T10723 amod complete,list
R2991 T10726 T10723 prep of,list
R2992 T10727 T10728 det all,genes
R2993 T10728 T10726 pobj genes,of
R2994 T10729 T10728 acl correlated,genes
R2995 T10730 T10729 prep with,correlated
R2996 T10731 T10732 amod gonadal,mass
R2997 T10732 T10730 pobj mass,with
R2998 T10733 T10732 compound fat,mass
R2999 T10734 T10725 auxpass is,provided
R3000 T10735 T10725 prep in,provided
R3001 T10736 T10737 compound Table,S2
R3002 T10737 T10735 pobj S2,in
R3003 T10738 T10725 punct .,provided