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PMC:1359071 / 19265-20105 JSONTXT

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craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T8423 24-29 SO:0000704 denotes Genes
T8424 38-45 UBERON:0000991 denotes Gonadal
T8425 96-101 UBERON:0002107 denotes liver
T8426 102-106 SO:0000704 denotes gene
T8427 102-117 GO:0010467 denotes gene expression
T8428 126-133 SO:0000704 denotes genetic
T8429 134-144 GO:0065007 denotes regulation
T8430 148-155 UBERON:0000991 denotes gonadal
T8431 286-291 SO:0000704 denotes genes
T8432 479-484 SO:0000704 denotes genes
T8433 506-511 SO:0000704 denotes genes

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T8434 24-29 SO_EXT:0000704 denotes Genes
T8435 38-45 UBERON:0000991 denotes Gonadal
T8436 46-49 CHEBI_UBERON_EXT:triglyceride_or_adipose_tissue denotes Fat
T8437 96-101 UBERON:0002107 denotes liver
T8438 102-106 SO_EXT:0000704 denotes gene
T8439 102-117 GO:0010467 denotes gene expression
T8440 126-133 SO_EXT:0000704 denotes genetic
T8441 134-144 GO:0065007 denotes regulation
T8442 148-155 UBERON:0000991 denotes gonadal
T8443 156-159 CHEBI_UBERON_EXT:triglyceride_or_adipose_tissue denotes fat
T8444 286-291 SO_EXT:0000704 denotes genes
T8445 451-454 CHEBI_UBERON_EXT:triglyceride_or_adipose_tissue denotes fat
T8446 479-484 SO_EXT:0000704 denotes genes
T8447 506-511 SO_EXT:0000704 denotes genes

craft-sa-dev

Id Subject Object Predicate Lexical cue
T8448 0-3 NN denotes Cis
T8449 4-9 NNS denotes eQTLs
T8450 3-4 HYPH denotes -
T8451 10-13 VBP denotes Are
T8452 14-23 NN denotes Candidate
T8453 24-29 NNS denotes Genes
T8454 30-33 IN denotes for
T8455 34-37 DT denotes the
T8456 55-60 NN denotes Trait
T8457 38-45 JJ denotes Gonadal
T8458 50-54 NN denotes Mass
T8459 46-49 NN denotes Fat
T8460 60-306 sentence denotes Given the marked effects of sex on liver gene expression and the genetic regulation of gonadal fat mass, we reasoned that cis-eQTLs with significant “sex-additive” and “sex-dominant” interactions would be potential candidate genes for our trait.
T8461 61-66 VBN denotes Given
T8462 169-177 VBD denotes reasoned
T8463 67-70 DT denotes the
T8464 78-85 NNS denotes effects
T8465 71-77 JJ denotes marked
T8466 86-88 IN denotes of
T8467 89-92 NN denotes sex
T8468 93-95 IN denotes on
T8469 96-101 NN denotes liver
T8470 107-117 NN denotes expression
T8471 102-106 NN denotes gene
T8472 118-121 CC denotes and
T8473 122-125 DT denotes the
T8474 134-144 NN denotes regulation
T8475 126-133 JJ denotes genetic
T8476 145-147 IN denotes of
T8477 148-155 JJ denotes gonadal
T8478 160-164 NN denotes mass
T8479 156-159 NN denotes fat
T8480 164-166 , denotes ,
T8481 166-168 PRP denotes we
T8482 178-182 IN denotes that
T8483 263-265 VB denotes be
T8484 183-186 NN denotes cis
T8485 187-192 NNS denotes eQTLs
T8486 186-187 HYPH denotes -
T8487 193-197 IN denotes with
T8488 198-209 JJ denotes significant
T8489 244-256 NNS denotes interactions
T8490 210-211 `` denotes “
T8491 211-214 NN denotes sex
T8492 215-223 JJ denotes additive
T8493 214-215 HYPH denotes -
T8494 223-224 '' denotes ”
T8495 225-228 CC denotes and
T8496 229-230 `` denotes “
T8497 234-242 JJ denotes dominant
T8498 230-233 NN denotes sex
T8499 233-234 HYPH denotes -
T8500 242-243 '' denotes ”
T8501 257-262 MD denotes would
T8502 266-275 JJ denotes potential
T8503 286-291 NNS denotes genes
T8504 276-285 NN denotes candidate
T8505 292-295 IN denotes for
T8506 296-299 PRP$ denotes our
T8507 300-305 NN denotes trait
T8508 305-306 . denotes .
T8509 306-396 sentence denotes Of the 2,118 significant cis-eQTLs, 304 (14%) were improved by the sex-interaction terms.
T8510 307-309 IN denotes Of
T8511 358-366 VBN denotes improved
T8512 310-313 DT denotes the
T8513 336-341 NNS denotes eQTLs
T8514 314-319 CD denotes 2,118
T8515 320-331 JJ denotes significant
T8516 332-335 NN denotes cis
T8517 335-336 HYPH denotes -
T8518 341-343 , denotes ,
T8519 343-346 CD denotes 304
T8520 347-348 -LRB- denotes (
T8521 350-351 NN denotes %
T8522 348-350 CD denotes 14
T8523 351-352 -RRB- denotes )
T8524 353-357 VBD denotes were
T8525 367-369 IN denotes by
T8526 370-373 DT denotes the
T8527 390-395 NNS denotes terms
T8528 374-377 NN denotes sex
T8529 378-389 NN denotes interaction
T8530 377-378 HYPH denotes -
T8531 395-396 . denotes .
T8532 396-499 sentence denotes Cis-eQTLs overlapping the confidence interval for the fat mass cQTL are candidate genes for the trait.
T8533 397-400 NN denotes Cis
T8534 401-406 NNS denotes eQTLs
T8535 400-401 HYPH denotes -
T8536 465-468 VBP denotes are
T8537 407-418 VBG denotes overlapping
T8538 419-422 DT denotes the
T8539 434-442 NN denotes interval
T8540 423-433 NN denotes confidence
T8541 443-446 IN denotes for
T8542 447-450 DT denotes the
T8543 460-464 NN denotes cQTL
T8544 451-454 NN denotes fat
T8545 455-459 NN denotes mass
T8546 469-478 NN denotes candidate
T8547 479-484 NNS denotes genes
T8548 485-488 IN denotes for
T8549 489-492 DT denotes the
T8550 493-498 NN denotes trait
T8551 498-499 . denotes .
T8552 499-619 sentence denotes Those genes with significant sex interactions receive increased consideration as potential candidates (Tables 4 and 5).
T8553 500-505 DT denotes Those
T8554 506-511 NNS denotes genes
T8555 546-553 VBP denotes receive
T8556 512-516 IN denotes with
T8557 517-528 JJ denotes significant
T8558 533-545 NNS denotes interactions
T8559 529-532 NN denotes sex
T8560 554-563 VBN denotes increased
T8561 564-577 NN denotes consideration
T8562 578-580 IN denotes as
T8563 581-590 JJ denotes potential
T8564 591-601 NNS denotes candidates
T8565 602-603 -LRB- denotes (
T8566 610-611 CD denotes 4
T8567 603-609 NNS denotes Tables
T8568 612-615 CC denotes and
T8569 616-617 CD denotes 5
T8570 617-618 -RRB- denotes )
T8571 618-619 . denotes .
R2679 T8448 T8449 compound Cis,eQTLs
R2680 T8449 T8451 nsubj eQTLs,Are
R2681 T8450 T8449 punct -,eQTLs
R2682 T8452 T8453 compound Candidate,Genes
R2683 T8453 T8451 attr Genes,Are
R2684 T8454 T8453 prep for,Genes
R2685 T8455 T8456 det the,Trait
R2686 T8456 T8454 pobj Trait,for
R2687 T8457 T8458 amod Gonadal,Mass
R2688 T8458 T8456 compound Mass,Trait
R2689 T8459 T8458 compound Fat,Mass
R2690 T8461 T8462 prep Given,reasoned
R2691 T8463 T8464 det the,effects
R2692 T8464 T8461 pobj effects,Given
R2693 T8465 T8464 amod marked,effects
R2694 T8466 T8464 prep of,effects
R2695 T8467 T8466 pobj sex,of
R2696 T8468 T8464 prep on,effects
R2697 T8469 T8470 compound liver,expression
R2698 T8470 T8468 pobj expression,on
R2699 T8471 T8470 compound gene,expression
R2700 T8472 T8464 cc and,effects
R2701 T8473 T8474 det the,regulation
R2702 T8474 T8464 conj regulation,effects
R2703 T8475 T8474 amod genetic,regulation
R2704 T8476 T8474 prep of,regulation
R2705 T8477 T8478 amod gonadal,mass
R2706 T8478 T8476 pobj mass,of
R2707 T8479 T8478 compound fat,mass
R2708 T8480 T8462 punct ", ",reasoned
R2709 T8481 T8462 nsubj we,reasoned
R2710 T8482 T8483 mark that,be
R2711 T8483 T8462 ccomp be,reasoned
R2712 T8484 T8485 compound cis,eQTLs
R2713 T8485 T8483 nsubj eQTLs,be
R2714 T8486 T8485 punct -,eQTLs
R2715 T8487 T8485 prep with,eQTLs
R2716 T8488 T8489 amod significant,interactions
R2717 T8489 T8487 pobj interactions,with
R2718 T8490 T8489 punct “,interactions
R2719 T8491 T8492 npadvmod sex,additive
R2720 T8492 T8489 amod additive,interactions
R2721 T8493 T8492 punct -,additive
R2722 T8494 T8492 punct ”,additive
R2723 T8495 T8492 cc and,additive
R2724 T8496 T8497 punct “,dominant
R2725 T8497 T8492 conj dominant,additive
R2726 T8498 T8497 npadvmod sex,dominant
R2727 T8499 T8497 punct -,dominant
R2728 T8500 T8489 punct ”,interactions
R2729 T8501 T8483 aux would,be
R2730 T8502 T8503 amod potential,genes
R2731 T8503 T8483 attr genes,be
R2732 T8504 T8503 compound candidate,genes
R2733 T8505 T8503 prep for,genes
R2734 T8506 T8507 poss our,trait
R2735 T8507 T8505 pobj trait,for
R2736 T8508 T8462 punct .,reasoned
R2737 T8510 T8511 prep Of,improved
R2738 T8512 T8513 det the,eQTLs
R2739 T8513 T8510 pobj eQTLs,Of
R2740 T8514 T8513 nummod "2,118",eQTLs
R2741 T8515 T8513 amod significant,eQTLs
R2742 T8516 T8513 compound cis,eQTLs
R2743 T8517 T8513 punct -,eQTLs
R2744 T8518 T8511 punct ", ",improved
R2745 T8519 T8511 nsubjpass 304,improved
R2746 T8520 T8521 punct (,%
R2747 T8521 T8519 parataxis %,304
R2748 T8522 T8521 nummod 14,%
R2749 T8523 T8521 punct ),%
R2750 T8524 T8511 auxpass were,improved
R2751 T8525 T8511 agent by,improved
R2752 T8526 T8527 det the,terms
R2753 T8527 T8525 pobj terms,by
R2754 T8528 T8529 compound sex,interaction
R2755 T8529 T8527 compound interaction,terms
R2756 T8530 T8529 punct -,interaction
R2757 T8531 T8511 punct .,improved
R2758 T8533 T8534 compound Cis,eQTLs
R2759 T8534 T8536 nsubj eQTLs,are
R2760 T8535 T8534 punct -,eQTLs
R2761 T8537 T8534 acl overlapping,eQTLs
R2762 T8538 T8539 det the,interval
R2763 T8539 T8537 dobj interval,overlapping
R2764 T8540 T8539 compound confidence,interval
R2765 T8541 T8539 prep for,interval
R2766 T8542 T8543 det the,cQTL
R2767 T8543 T8541 pobj cQTL,for
R2768 T8544 T8545 compound fat,mass
R2769 T8545 T8543 compound mass,cQTL
R2770 T8546 T8547 compound candidate,genes
R2771 T8547 T8536 attr genes,are
R2772 T8548 T8547 prep for,genes
R2773 T8549 T8550 det the,trait
R2774 T8550 T8548 pobj trait,for
R2775 T8551 T8536 punct .,are
R2776 T8553 T8554 det Those,genes
R2777 T8554 T8555 nsubj genes,receive
R2778 T8556 T8554 prep with,genes
R2779 T8557 T8558 amod significant,interactions
R2780 T8558 T8556 pobj interactions,with
R2781 T8559 T8558 compound sex,interactions
R2782 T8560 T8561 amod increased,consideration
R2783 T8561 T8555 dobj consideration,receive
R2784 T8562 T8555 prep as,receive
R2785 T8563 T8564 amod potential,candidates
R2786 T8564 T8562 pobj candidates,as
R2787 T8565 T8566 punct (,4
R2788 T8566 T8555 parataxis 4,receive
R2789 T8567 T8566 nmod Tables,4
R2790 T8568 T8566 cc and,4
R2791 T8569 T8566 conj 5,4
R2792 T8570 T8566 punct ),4
R2793 T8571 T8555 punct .,receive