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PMC:1315279 / 32127-32906 JSONTXT

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craft-sa-dev

Id Subject Object Predicate Lexical cue
T7540 0-5 NN denotes Sam68
T7541 14-24 NN denotes expression
T7542 6-13 NN denotes protein
T7543 29-37 VBN denotes observed
T7544 25-28 VBD denotes was
T7545 38-48 IN denotes throughout
T7546 49-52 DT denotes the
T7547 70-76 NN denotes embryo
T7548 53-63 VBG denotes developing
T7549 64-69 NN denotes mouse
T7550 76-78 , denotes ,
T7551 78-80 IN denotes in
T7552 81-88 VBG denotes keeping
T7553 89-93 IN denotes with
T7554 94-102 JJ denotes previous
T7555 103-110 NNS denotes reports
T7556 111-115 WDT denotes that
T7557 116-126 VBD denotes identified
T7558 127-130 DT denotes the
T7559 137-141 NN denotes mRNA
T7560 131-136 NN denotes Sam68
T7561 155-164 VBN denotes expressed
T7562 142-144 TO denotes to
T7563 145-147 VB denotes be
T7564 148-154 RB denotes widely
T7565 165-166 -LRB- denotes [
T7566 166-168 CD denotes 38
T7567 168-169 -RRB- denotes ]
T7568 169-170 . denotes .
T7569 170-323 sentence denotes We observe Sam68 staining in the brain, heart, and intestine (see Figure 1) as well as liver, skin, and kidney (unpublished data) of late-stage embryos.
T7570 171-173 PRP denotes We
T7571 174-181 VBP denotes observe
T7572 182-187 NN denotes Sam68
T7573 188-196 NN denotes staining
T7574 197-199 IN denotes in
T7575 200-203 DT denotes the
T7576 204-209 NN denotes brain
T7577 209-211 , denotes ,
T7578 211-216 NN denotes heart
T7579 216-218 , denotes ,
T7580 218-221 CC denotes and
T7581 222-231 NN denotes intestine
T7582 232-233 -LRB- denotes (
T7583 233-236 VB denotes see
T7584 237-243 NN denotes Figure
T7585 244-245 CD denotes 1
T7586 245-246 -RRB- denotes )
T7587 247-249 RB denotes as
T7588 255-257 IN denotes as
T7589 250-254 RB denotes well
T7590 258-263 NN denotes liver
T7591 263-265 , denotes ,
T7592 265-269 NN denotes skin
T7593 269-271 , denotes ,
T7594 271-274 CC denotes and
T7595 275-281 NN denotes kidney
T7596 282-283 -LRB- denotes (
T7597 295-299 NNS denotes data
T7598 283-294 JJ denotes unpublished
T7599 299-300 -RRB- denotes )
T7600 301-303 IN denotes of
T7601 304-308 JJ denotes late
T7602 309-314 NN denotes stage
T7603 308-309 HYPH denotes -
T7604 315-322 NNS denotes embryos
T7605 322-323 . denotes .
T7606 323-487 sentence denotes This expression pattern is consistent with previous work that has observed Sam68 in neurons [52] and as a substrate of the intestinal SIK/breast tumor kinase [43].
T7607 324-328 DT denotes This
T7608 340-347 NN denotes pattern
T7609 329-339 NN denotes expression
T7610 348-350 VBZ denotes is
T7611 351-361 JJ denotes consistent
T7612 362-366 IN denotes with
T7613 367-375 JJ denotes previous
T7614 376-380 NN denotes work
T7615 381-385 WDT denotes that
T7616 390-398 VBN denotes observed
T7617 386-389 VBZ denotes has
T7618 399-404 NN denotes Sam68
T7619 405-407 IN denotes in
T7620 408-415 NNS denotes neurons
T7621 416-417 -LRB- denotes [
T7622 417-419 CD denotes 52
T7623 419-420 -RRB- denotes ]
T7624 421-424 CC denotes and
T7625 425-427 IN denotes as
T7626 428-429 DT denotes a
T7627 430-439 NN denotes substrate
T7628 440-442 IN denotes of
T7629 443-446 DT denotes the
T7630 475-481 NN denotes kinase
T7631 447-457 JJ denotes intestinal
T7632 458-461 NN denotes SIK
T7633 461-462 HYPH denotes /
T7634 462-468 NN denotes breast
T7635 469-474 NN denotes tumor
T7636 482-483 -LRB- denotes [
T7637 483-485 CD denotes 43
T7638 485-486 -RRB- denotes ]
T7639 486-487 . denotes .
T7640 487-613 sentence denotes The expression of Sam68 was not altered in aging bone marrow stromal cells or in senescencing WI-38 cells (unpublished data).
T7641 488-491 DT denotes The
T7642 492-502 NN denotes expression
T7643 520-527 VBN denotes altered
T7644 503-505 IN denotes of
T7645 506-511 NN denotes Sam68
T7646 512-515 VBD denotes was
T7647 516-519 RB denotes not
T7648 528-530 IN denotes in
T7649 531-536 VBG denotes aging
T7650 557-562 NNS denotes cells
T7651 537-541 NN denotes bone
T7652 542-548 NN denotes marrow
T7653 549-556 JJ denotes stromal
T7654 563-565 CC denotes or
T7655 566-568 IN denotes in
T7656 569-581 VBG denotes senescencing
T7657 588-593 NNS denotes cells
T7658 582-584 NN denotes WI
T7659 584-585 HYPH denotes -
T7660 585-587 CD denotes 38
T7661 594-595 -LRB- denotes (
T7662 607-611 NNS denotes data
T7663 595-606 JJ denotes unpublished
T7664 611-612 -RRB- denotes )
T7665 612-613 . denotes .
T7666 613-779 sentence denotes The presence of Sam68 in chondrocytes, osteoblasts and osteoclasts in developing cartilage and bone predicted a pivotal role for the protein in skeletal development.
T7667 614-617 DT denotes The
T7668 618-626 NN denotes presence
T7669 714-723 VBD denotes predicted
T7670 627-629 IN denotes of
T7671 630-635 NN denotes Sam68
T7672 636-638 IN denotes in
T7673 639-651 NNS denotes chondrocytes
T7674 651-653 , denotes ,
T7675 653-664 NNS denotes osteoblasts
T7676 665-668 CC denotes and
T7677 669-680 NNS denotes osteoclasts
T7678 681-683 IN denotes in
T7679 684-694 VBG denotes developing
T7680 695-704 NN denotes cartilage
T7681 705-708 CC denotes and
T7682 709-713 NN denotes bone
T7683 724-725 DT denotes a
T7684 734-738 NN denotes role
T7685 726-733 JJ denotes pivotal
T7686 739-742 IN denotes for
T7687 743-746 DT denotes the
T7688 747-754 NN denotes protein
T7689 755-757 IN denotes in
T7690 758-766 JJ denotes skeletal
T7691 767-778 NN denotes development
T7692 778-779 . denotes .
R4295 T7540 T7541 compound Sam68,expression
R4296 T7541 T7543 nsubjpass expression,observed
R4297 T7542 T7541 compound protein,expression
R4298 T7544 T7543 auxpass was,observed
R4299 T7545 T7543 prep throughout,observed
R4300 T7546 T7547 det the,embryo
R4301 T7547 T7545 pobj embryo,throughout
R4302 T7548 T7547 amod developing,embryo
R4303 T7549 T7547 compound mouse,embryo
R4304 T7550 T7543 punct ", ",observed
R4305 T7551 T7543 prep in,observed
R4306 T7552 T7551 pobj keeping,in
R4307 T7553 T7552 prep with,keeping
R4308 T7554 T7555 amod previous,reports
R4309 T7555 T7553 pobj reports,with
R4310 T7556 T7557 dep that,identified
R4311 T7557 T7555 relcl identified,reports
R4312 T7558 T7559 det the,mRNA
R4313 T7559 T7561 nsubjpass mRNA,expressed
R4314 T7560 T7559 compound Sam68,mRNA
R4315 T7561 T7557 ccomp expressed,identified
R4316 T7562 T7561 aux to,expressed
R4317 T7563 T7561 auxpass be,expressed
R4318 T7564 T7561 advmod widely,expressed
R4319 T7565 T7566 punct [,38
R4320 T7566 T7543 parataxis 38,observed
R4321 T7567 T7566 punct ],38
R4322 T7568 T7543 punct .,observed
R4323 T7570 T7571 nsubj We,observe
R4324 T7572 T7573 compound Sam68,staining
R4325 T7573 T7571 dobj staining,observe
R4326 T7574 T7571 prep in,observe
R4327 T7575 T7576 det the,brain
R4328 T7576 T7574 pobj brain,in
R4329 T7577 T7576 punct ", ",brain
R4330 T7578 T7576 conj heart,brain
R4331 T7579 T7578 punct ", ",heart
R4332 T7580 T7578 cc and,heart
R4333 T7581 T7578 conj intestine,heart
R4334 T7582 T7583 punct (,see
R4335 T7583 T7581 parataxis see,intestine
R4336 T7584 T7583 dobj Figure,see
R4337 T7585 T7584 nummod 1,Figure
R4338 T7586 T7583 punct ),see
R4339 T7587 T7588 advmod as,as
R4340 T7588 T7576 cc as,brain
R4341 T7589 T7588 advmod well,as
R4342 T7590 T7576 conj liver,brain
R4343 T7591 T7590 punct ", ",liver
R4344 T7592 T7590 conj skin,liver
R4345 T7593 T7592 punct ", ",skin
R4346 T7594 T7592 cc and,skin
R4347 T7595 T7592 conj kidney,skin
R4348 T7596 T7597 punct (,data
R4349 T7597 T7595 meta data,kidney
R4350 T7598 T7597 amod unpublished,data
R4351 T7599 T7597 punct ),data
R4352 T7600 T7576 prep of,brain
R4353 T7601 T7602 amod late,stage
R4354 T7602 T7604 compound stage,embryos
R4355 T7603 T7602 punct -,stage
R4356 T7604 T7600 pobj embryos,of
R4357 T7605 T7571 punct .,observe
R4358 T7607 T7608 det This,pattern
R4359 T7608 T7610 nsubj pattern,is
R4360 T7609 T7608 compound expression,pattern
R4361 T7611 T7610 acomp consistent,is
R4362 T7612 T7611 prep with,consistent
R4363 T7613 T7614 amod previous,work
R4364 T7614 T7612 pobj work,with
R4365 T7615 T7616 dep that,observed
R4366 T7616 T7614 relcl observed,work
R4367 T7617 T7616 aux has,observed
R4368 T7618 T7616 dobj Sam68,observed
R4369 T7619 T7618 prep in,Sam68
R4370 T7620 T7619 pobj neurons,in
R4371 T7621 T7622 punct [,52
R4372 T7622 T7619 parataxis 52,in
R4373 T7623 T7622 punct ],52
R4374 T7624 T7619 cc and,in
R4375 T7625 T7619 conj as,in
R4376 T7626 T7627 det a,substrate
R4377 T7627 T7625 pobj substrate,as
R4378 T7628 T7627 prep of,substrate
R4379 T7629 T7630 det the,kinase
R4380 T7630 T7628 pobj kinase,of
R4381 T7631 T7632 amod intestinal,SIK
R4382 T7632 T7630 nmod SIK,kinase
R4383 T7633 T7632 punct /,SIK
R4384 T7634 T7635 compound breast,tumor
R4385 T7635 T7632 appos tumor,SIK
R4386 T7636 T7637 punct [,43
R4387 T7637 T7627 parataxis 43,substrate
R4388 T7638 T7637 punct ],43
R4389 T7639 T7610 punct .,is
R4390 T7641 T7642 det The,expression
R4391 T7642 T7643 nsubjpass expression,altered
R4392 T7644 T7642 prep of,expression
R4393 T7645 T7644 pobj Sam68,of
R4394 T7646 T7643 auxpass was,altered
R4395 T7647 T7643 neg not,altered
R4396 T7648 T7643 prep in,altered
R4397 T7649 T7650 amod aging,cells
R4398 T7650 T7648 pobj cells,in
R4399 T7651 T7652 nmod bone,marrow
R4400 T7652 T7650 nmod marrow,cells
R4401 T7653 T7650 amod stromal,cells
R4402 T7654 T7648 cc or,in
R4403 T7655 T7648 conj in,in
R4404 T7656 T7657 amod senescencing,cells
R4405 T7657 T7655 pobj cells,in
R4406 T7658 T7657 nmod WI,cells
R4407 T7659 T7658 punct -,WI
R4408 T7660 T7658 nummod 38,WI
R4409 T7661 T7662 punct (,data
R4410 T7662 T7643 meta data,altered
R4411 T7663 T7662 amod unpublished,data
R4412 T7664 T7662 punct ),data
R4413 T7665 T7643 punct .,altered
R4414 T7667 T7668 det The,presence
R4415 T7668 T7669 nsubj presence,predicted
R4416 T7670 T7668 prep of,presence
R4417 T7671 T7670 pobj Sam68,of
R4418 T7672 T7668 prep in,presence
R4419 T7673 T7672 pobj chondrocytes,in
R4420 T7674 T7673 punct ", ",chondrocytes
R4421 T7675 T7673 conj osteoblasts,chondrocytes
R4422 T7676 T7675 cc and,osteoblasts
R4423 T7677 T7675 conj osteoclasts,osteoblasts
R4424 T7678 T7673 prep in,chondrocytes
R4425 T7679 T7680 amod developing,cartilage
R4426 T7680 T7678 pobj cartilage,in
R4427 T7681 T7680 cc and,cartilage
R4428 T7682 T7680 conj bone,cartilage
R4429 T7683 T7684 det a,role
R4430 T7684 T7669 dobj role,predicted
R4431 T7685 T7684 amod pivotal,role
R4432 T7686 T7684 prep for,role
R4433 T7687 T7688 det the,protein
R4434 T7688 T7686 pobj protein,for
R4435 T7689 T7684 prep in,role
R4436 T7690 T7691 amod skeletal,development
R4437 T7691 T7689 pobj development,in
R4438 T7692 T7669 punct .,predicted

2_test

Id Subject Object Predicate Lexical cue
16362077-14643926-85614466 166-168 14643926 denotes 38
16362077-14996936-85614467 417-419 14996936 denotes 52
16362077-16179349-85614468 483-485 16179349 denotes 43
T43821 166-168 14643926 denotes 38
T22394 417-419 14996936 denotes 52
T12234 483-485 16179349 denotes 43

craft-ca-core-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T6720 0-5 PR:000009279 denotes Sam68
T6721 14-24 GO:0010467 denotes expression
T6722 64-69 NCBITaxon:10088 denotes mouse
T6723 70-76 UBERON:0000922 denotes embryo
T6724 131-136 PR:000009279 denotes Sam68
T6725 155-164 GO:0010467 denotes expressed
T6726 182-187 PR:000009279 denotes Sam68
T6727 204-209 UBERON:0000955 denotes brain
T6728 211-216 UBERON:0000948 denotes heart
T6729 222-231 UBERON:0000160 denotes intestine
T6730 258-263 UBERON:0002107 denotes liver
T6731 275-281 UBERON:0002113 denotes kidney
T6732 304-322 UBERON:0000323 denotes late-stage embryos
T6733 329-339 GO:0010467 denotes expression
T6734 399-404 PR:000009279 denotes Sam68
T6735 408-415 CL:0000540 denotes neurons
T6736 447-457 UBERON:0000160 denotes intestinal
T6737 447-461 PR:000013434 denotes intestinal SIK
T6738 462-468 UBERON:0000310 denotes breast
T6739 462-481 PR:000013434 denotes breast tumor kinase
T6740 492-502 GO:0010467 denotes expression
T6741 506-511 PR:000009279 denotes Sam68
T6742 531-536 GO:0007568 denotes aging
T6743 537-556 UBERON:0007195 denotes bone marrow stromal
T6744 537-562 CL:0010001 denotes bone marrow stromal cells
T6745 569-581 GO:0007568 denotes senescencing
T6746 630-635 PR:000009279 denotes Sam68
T6747 639-651 CL:0000138 denotes chondrocytes
T6748 653-664 CL:0000062 denotes osteoblasts
T6749 669-680 CL:0000092 denotes osteoclasts
T6750 758-766 UBERON:0004288 denotes skeletal
T6751 758-778 GO:0001501 denotes skeletal development

craft-ca-core-ex-dev

Below, discontinuous spans are shown in the chain model. You can change it to the bag model.

Id Subject Object Predicate Lexical cue
T6989 0-5 PR_EXT:000009279 denotes Sam68
T6990 6-13 CHEBI_PR_EXT:protein denotes protein
T6991 14-24 GO:0010467 denotes expression
T6992 64-69 NCBITaxon:10088 denotes mouse
T6993 70-76 UBERON:0000922 denotes embryo
T6994 131-136 PR_EXT:000009279 denotes Sam68
T6995 137-141 CHEBI_SO_EXT:mRNA denotes mRNA
T6996 155-164 GO:0010467 denotes expressed
T6997 182-187 PR_EXT:000009279 denotes Sam68
T6998 204-209 UBERON:0000955 denotes brain
T6999 211-216 UBERON:0000948 denotes heart
T7000 222-231 UBERON:0000160 denotes intestine
T7001 258-263 UBERON:0002107 denotes liver
T7002 265-269 UBERON_EXT:zone_of_skin_or_skin_of_body denotes skin
T7003 275-281 UBERON:0002113 denotes kidney
T7004 304-322 UBERON:0000323 denotes late-stage embryos
T7005 329-339 GO:0010467 denotes expression
T7006 399-404 PR_EXT:000009279 denotes Sam68
T7007 408-415 CL:0000540 denotes neurons
T7008 447-457 UBERON:0000160 denotes intestinal
T7009 447-461 PR_EXT:000013434 denotes intestinal SIK
T7010 462-468 UBERON:0000310 denotes breast
T7011 462-481 PR_EXT:000013434 denotes breast tumor kinase
T7012 475-481 GO_EXT:0016301 denotes kinase
T7013 492-502 GO:0010467 denotes expression
T7014 506-511 PR_EXT:000009279 denotes Sam68
T7015 531-536 GO:0007568 denotes aging
T7016 537-556 UBERON:0007195 denotes bone marrow stromal
T7017 537-562 CL:0010001 denotes bone marrow stromal cells
T7018 557-562 CL_GO_EXT:cell denotes cells
T7019 569-581 GO:0007568 denotes senescencing
T7020 588-593 CL_GO_EXT:cell denotes cells
T7021 630-635 PR_EXT:000009279 denotes Sam68
T7022 639-651 CL:0000138 denotes chondrocytes
T7023 653-664 CL:0000062 denotes osteoblasts
T7024 669-680 CL:0000092 denotes osteoclasts
T7025 695-704 UBERON_EXT:cartilage_element_or_tissue denotes cartilage
T7026 709-713 UBERON_EXT:bone_element_or_tissue denotes bone
T7027 747-754 CHEBI_PR_EXT:protein denotes protein
T7028 758-766 UBERON:0004288 denotes skeletal
T7029 758-778 GO:0001501 denotes skeletal development