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PMC:1310901 / 7263-7464 JSONTXT

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bionlp-st-ge-2016-reference-eval

Id Subject Object Predicate Lexical cue
T4320 10-20 Gene_expression denotes expression
T4321 156-166 Gene_expression denotes expression
T4324 10-20 Gene_expression denotes expression
T4325 10-20 Gene_expression denotes expression
T4326 10-20 Gene_expression denotes expression
T4327 10-20 Gene_expression denotes expression
T4328 10-20 Gene_expression denotes expression
T4329 10-20 Gene_expression denotes expression
T4331 89-93 Protein denotes MBD4
T4332 142-147 Protein denotes IRF-4
T4339 46-51 Protein denotes DNMT1
T4340 52-58 Protein denotes DNMT3A
T4341 60-66 Protein denotes DNMT3B
T4342 68-72 Protein denotes MeCP
T4343 74-78 Protein denotes MBD1
T4344 80-84 Protein denotes MBD2
T4345 33-37 Protein denotes DNMT
T4346 41-44 Protein denotes MBP
R3511 T4331 T4320 themeOf MBD4,expression
R3512 T4332 T4321 themeOf IRF-4,expression
R3517 T4339 T4324 themeOf DNMT1,expression
R3518 T4340 T4325 themeOf DNMT3A,expression
R3519 T4341 T4326 themeOf DNMT3B,expression
R3520 T4342 T4327 themeOf MeCP,expression
R3521 T4343 T4328 themeOf MBD1,expression
R3522 T4344 T4329 themeOf MBD2,expression

events-check-again

Id Subject Object Predicate Lexical cue Speculation
T4275 10-20 Gene_expression denotes expression true
T4276 10-20 Gene_expression denotes expression true
T4277 10-20 Gene_expression denotes expression true
T4278 10-20 Gene_expression denotes expression true
T4279 10-20 Gene_expression denotes expression true
T4280 10-20 Gene_expression denotes expression true
T4281 10-20 Gene_expression denotes expression true
T4282 46-51 Protein denotes DNMT1
T4283 52-58 Protein denotes DNMT3A
T4284 60-66 Protein denotes DNMT3B
T4285 68-72 Protein denotes MeCP
T4286 74-78 Protein denotes MBD1
T4287 80-84 Protein denotes MBD2
T4288 89-93 Protein denotes MBD4
T4289 142-147 Protein denotes IRF-4
T4290 156-166 Gene_expression denotes expression true
R3491 T4282 T4276 themeOf DNMT1,expression
R3492 T4283 T4277 themeOf DNMT3A,expression
R3493 T4284 T4278 themeOf DNMT3B,expression
R3494 T4285 T4279 themeOf MeCP,expression
R3495 T4286 T4280 themeOf MBD1,expression
R3496 T4287 T4281 themeOf MBD2,expression
R3497 T4288 T4275 themeOf MBD4,expression
R3498 T4289 T4290 themeOf IRF-4,expression

2_test

Id Subject Object Predicate Lexical cue
16396836-12101420-76538184 121-123 12101420 denotes 28

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T3526 6-9 IN denotes for
T3527 10-20 NN denotes expression
T3528 21-29 NN denotes analysis
T3529 30-32 IN denotes of
T3530 33-37 NN denotes DNMT
T3531 38-40 CC denotes or
T3532 41-44 NN denotes MBP
T3533 45-46 -LRB- denotes (
T3534 46-51 NN denotes DNMT1
T3535 52-58 NN denotes DNMT3A
T3536 58-59 -COMMA- denotes ,
T3537 60-66 NN denotes DNMT3B
T3538 66-67 -COMMA- denotes ,
T3539 68-72 NN denotes MeCP
T3540 72-73 -COMMA- denotes ,
T3541 74-78 NN denotes MBD1
T3542 78-79 -COMMA- denotes ,
T3543 80-84 NN denotes MBD2
T3544 85-88 CC denotes and
T3545 89-93 NN denotes MBD4
T3546 93-94 -RRB- denotes )
T3547 95-99 VB denotes were
T3548 100-109 VB denotes published
T3549 110-119 RB denotes elsewhere
T3550 120-121 -LRB- denotes (
T3551 121-123 CD denotes 28
T3552 123-124 -RRB- denotes )
T3553 126-129 IN denotes For
T3554 130-138 NN denotes analysis
T3555 139-141 IN denotes of
T3556 142-147 NN denotes IRF-4
T3557 148-155 NN denotes protein
T3558 156-166 NN denotes expression
T3559 166-167 -COMMA- denotes ,
T3560 168-169 DT denotes a
T3561 170-178 JJ denotes standard
T3562 179-193 NN denotes immunoblotting
T3563 194-199 NN denotes assay
R2827 T3528 T3526 arg2Of analysis,for
R2828 T3528 T3527 arg1Of analysis,expression
R2829 T3528 T3529 arg1Of analysis,of
R2830 T3530 T3531 arg1Of DNMT,or
R2831 T3531 T3529 arg2Of or,of
R2832 T3531 T3533 arg1Of or,(
R2833 T3532 T3531 arg2Of MBP,or
R2834 T3535 T3534 arg1Of DNMT3A,DNMT1
R2835 T3535 T3536 arg1Of DNMT3A,","
R2836 T3536 T3538 arg1Of ",",","
R2837 T3537 T3536 arg2Of DNMT3B,","
R2838 T3538 T3540 arg1Of ",",","
R2839 T3539 T3538 arg2Of MeCP,","
R2840 T3540 T3542 arg1Of ",",","
R2841 T3541 T3540 arg2Of MBD1,","
R2842 T3542 T3544 arg1Of ",",and
R2843 T3543 T3542 arg2Of MBD2,","
R2844 T3544 T3533 arg2Of and,(
R2845 T3545 T3544 arg2Of MBD4,and
R2846 T3546 T3533 arg3Of ),(
R2847 T3548 T3547 arg2Of published,were
R2848 T3548 T3549 arg1Of published,elsewhere
R2849 T3549 T3550 arg1Of elsewhere,(
R2850 T3551 T3550 arg2Of 28,(
R2851 T3552 T3550 arg3Of ),(
R2852 T3554 T3553 arg2Of analysis,For
R2853 T3554 T3555 arg1Of analysis,of
R2854 T3558 T3555 arg2Of expression,of
R2855 T3558 T3556 arg1Of expression,IRF-4
R2856 T3558 T3557 arg1Of expression,protein
R2857 T3563 T3560 arg1Of assay,a
R2858 T3563 T3561 arg1Of assay,standard
R2859 T3563 T3562 arg1Of assay,immunoblotting

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T3882 6-9 IN denotes for
T3883 10-20 NN denotes expression
T3884 21-29 NN denotes analysis
T3885 30-32 IN denotes of
T3886 33-37 NNP denotes DNMT
T3887 38-40 CC denotes or
T3888 41-44 NNP denotes MBP
T3889 45-46 -LRB- denotes (
T3890 46-51 NNP denotes DNMT1
T3891 52-58 NNP denotes DNMT3A
T3892 58-59 , denotes ,
T3893 60-66 NNP denotes DNMT3B
T3894 66-67 , denotes ,
T3895 68-72 NNP denotes MeCP
T3896 72-73 , denotes ,
T3897 74-78 NNP denotes MBD1
T3898 78-79 , denotes ,
T3899 80-84 NNP denotes MBD2
T3900 85-88 CC denotes and
T3901 89-93 NNP denotes MBD4
T3902 93-94 -RRB- denotes )
T3903 95-99 VBD denotes were
T3904 100-109 VBN denotes published
T3905 110-119 RB denotes elsewhere
T3906 120-121 -LRB- denotes (
T3907 121-123 CD denotes 28
T3908 123-124 -RRB- denotes )
T3909 124-125 . denotes .
T3910 126-129 IN denotes For
T3911 130-138 NN denotes analysis
T3912 139-141 IN denotes of
T3913 142-147 NN denotes IRF-4
T3914 148-155 NN denotes protein
T3915 156-166 NN denotes expression
T3916 166-167 , denotes ,
T3917 168-169 DT denotes a
T3918 170-178 JJ denotes standard
T3919 179-193 NN denotes immunoblotting
T3920 194-199 NN denotes assay
R3169 T3883 T3884 compound expression,analysis
R3170 T3884 T3882 pobj analysis,for
R3171 T3885 T3884 prep of,analysis
R3172 T3886 T3885 pobj DNMT,of
R3173 T3887 T3886 cc or,DNMT
R3174 T3888 T3886 conj MBP,DNMT
R3175 T3889 T3888 punct (,MBP
R3176 T3890 T3891 compound DNMT1,DNMT3A
R3177 T3891 T3888 appos DNMT3A,MBP
R3178 T3892 T3891 punct ",",DNMT3A
R3179 T3893 T3891 conj DNMT3B,DNMT3A
R3180 T3894 T3893 punct ",",DNMT3B
R3181 T3895 T3893 conj MeCP,DNMT3B
R3182 T3896 T3895 punct ",",MeCP
R3183 T3897 T3895 conj MBD1,MeCP
R3184 T3898 T3897 punct ",",MBD1
R3185 T3899 T3897 conj MBD2,MBD1
R3186 T3900 T3899 cc and,MBD2
R3187 T3901 T3899 conj MBD4,MBD2
R3188 T3902 T3888 punct ),MBP
R3189 T3903 T3904 auxpass were,published
R3190 T3904 T3904 ROOT published,published
R3191 T3905 T3904 advmod elsewhere,published
R3192 T3906 T3904 punct (,published
R3193 T3907 T3904 npadvmod 28,published
R3194 T3908 T3904 punct ),published
R3195 T3909 T3904 punct .,published
R3197 T3911 T3910 pobj analysis,For
R3198 T3912 T3911 prep of,analysis
R3199 T3913 T3915 compound IRF-4,expression
R3200 T3914 T3915 compound protein,expression
R3201 T3915 T3912 pobj expression,of
R3203 T3917 T3920 det a,assay
R3204 T3918 T3920 amod standard,assay
R3205 T3919 T3920 compound immunoblotting,assay

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T4299 33-37 Protein denotes DNMT
T4300 41-44 Protein denotes MBP
T4301 46-58 Protein denotes DNMT1 DNMT3A
T4302 60-66 Protein denotes DNMT3B
T4303 68-72 Protein denotes MeCP
T4304 74-78 Protein denotes MBD1
T4305 80-84 Protein denotes MBD2
T4306 89-93 Protein denotes MBD4
T4307 10-20 Gene_expression denotes expression
T4308 10-20 Gene_expression denotes expression
T4309 10-20 Gene_expression denotes expression
T4310 10-20 Gene_expression denotes expression
T4311 10-20 Gene_expression denotes expression
T4312 10-20 Gene_expression denotes expression
T4313 10-20 Gene_expression denotes expression
T4314 10-20 Gene_expression denotes expression
T4315 142-155 Protein denotes IRF-4 protein
T4316 156-166 Gene_expression denotes expression
R3506 T4304 T4312 themeOf MBD1,expression
R3507 T4305 T4313 themeOf MBD2,expression
R3508 T4306 T4314 themeOf MBD4,expression
R3509 T4315 T4316 themeOf IRF-4 protein,expression
R3501 T4299 T4307 themeOf DNMT,expression
R3502 T4300 T4308 themeOf MBP,expression
R3503 T4301 T4309 themeOf DNMT1 DNMT3A,expression
R3504 T4302 T4310 themeOf DNMT3B,expression
R3505 T4303 T4311 themeOf MeCP,expression

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue Speculation
T3425 10-20 Gene_expression denotes expression true
T3426 156-166 Gene_expression denotes expression true
T3429 10-20 Gene_expression denotes expression true
T3430 10-20 Gene_expression denotes expression true
T3431 10-20 Gene_expression denotes expression true
T3432 10-20 Gene_expression denotes expression true
T3433 10-20 Gene_expression denotes expression true
T3434 10-20 Gene_expression denotes expression true
T3436 89-93 Protein denotes MBD4
T3437 142-147 Protein denotes IRF-4
T3444 52-58 Protein denotes DNMT3A
T3445 60-66 Protein denotes DNMT3B
T3446 68-72 Protein denotes MeCP
T3447 74-78 Protein denotes MBD1
T3448 80-84 Protein denotes MBD2
T3449 46-51 Protein denotes DNMT1
R2743 T3444 T3430 themeOf DNMT3A,expression
R2744 T3445 T3431 themeOf DNMT3B,expression
R2745 T3446 T3432 themeOf MeCP,expression
R2746 T3447 T3433 themeOf MBD1,expression
R2747 T3448 T3434 themeOf MBD2,expression
R2748 T3449 T3429 themeOf DNMT1,expression
R2737 T3436 T3425 themeOf MBD4,expression
R2738 T3437 T3426 themeOf IRF-4,expression

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T3790 33-37 P26358 denotes DNMT
T3791 46-51 P26358 denotes DNMT1
T3792 52-58 Q9Y6K1 denotes DNMT3A
T3793 60-66 Q9UBC3 denotes DNMT3B
T3794 68-72 P51608 denotes MeCP
T3795 74-78 Q9UIS9 denotes MBD1
T3796 80-84 Q9UBB5 denotes MBD2
T3797 89-93 O95243 denotes MBD4
T3798 142-147 Q15306 denotes IRF-4

test2

Id Subject Object Predicate Lexical cue Speculation
T3394 10-20 Gene_expression denotes expression true
T3395 46-51 Protein denotes DNMT1 true
T3396 52-58 Protein denotes DNMT3A true
T3397 60-66 Protein denotes DNMT3B true
T3398 68-72 Protein denotes MeCP true
T3399 74-78 Protein denotes MBD1 true
T3400 80-84 Protein denotes MBD2
T3401 89-93 Protein denotes MBD4
T3402 142-147 Protein denotes IRF-4
T3403 156-166 Gene_expression denotes expression
R2726 T3395 T3394 themeOf DNMT1,expression
R2727 T3396 T3394 themeOf DNMT3A,expression
R2728 T3397 T3394 themeOf DNMT3B,expression
R2729 T3398 T3394 themeOf MeCP,expression
R2730 T3399 T3394 themeOf MBD1,expression
R2731 T3400 T3394 themeOf MBD2,expression
R2732 T3401 T3394 themeOf MBD4,expression
R2733 T3402 T3403 themeOf IRF-4,expression