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PMC:1310901 / 7242-7388 JSONTXT

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bionlp-st-ge-2016-reference-eval

Id Subject Object Predicate Lexical cue
T4320 31-41 Gene_expression denotes expression
T4324 31-41 Gene_expression denotes expression
T4325 31-41 Gene_expression denotes expression
T4326 31-41 Gene_expression denotes expression
T4327 31-41 Gene_expression denotes expression
T4328 31-41 Gene_expression denotes expression
T4329 31-41 Gene_expression denotes expression
T4331 110-114 Protein denotes MBD4
T4339 67-72 Protein denotes DNMT1
T4340 73-79 Protein denotes DNMT3A
T4341 81-87 Protein denotes DNMT3B
T4342 89-93 Protein denotes MeCP
T4343 95-99 Protein denotes MBD1
T4344 101-105 Protein denotes MBD2
T4345 54-58 Protein denotes DNMT
T4346 62-65 Protein denotes MBP
R3511 T4331 T4320 themeOf MBD4,expression
R3517 T4339 T4324 themeOf DNMT1,expression
R3518 T4340 T4325 themeOf DNMT3A,expression
R3519 T4341 T4326 themeOf DNMT3B,expression
R3520 T4342 T4327 themeOf MeCP,expression
R3521 T4343 T4328 themeOf MBD1,expression
R3522 T4344 T4329 themeOf MBD2,expression

events-check-again

Id Subject Object Predicate Lexical cue Speculation
T4275 31-41 Gene_expression denotes expression true
T4276 31-41 Gene_expression denotes expression true
T4277 31-41 Gene_expression denotes expression true
T4278 31-41 Gene_expression denotes expression true
T4279 31-41 Gene_expression denotes expression true
T4280 31-41 Gene_expression denotes expression true
T4281 31-41 Gene_expression denotes expression true
T4282 67-72 Protein denotes DNMT1
T4283 73-79 Protein denotes DNMT3A
T4284 81-87 Protein denotes DNMT3B
T4285 89-93 Protein denotes MeCP
T4286 95-99 Protein denotes MBD1
T4287 101-105 Protein denotes MBD2
T4288 110-114 Protein denotes MBD4
R3491 T4282 T4276 themeOf DNMT1,expression
R3492 T4283 T4277 themeOf DNMT3A,expression
R3493 T4284 T4278 themeOf DNMT3B,expression
R3494 T4285 T4279 themeOf MeCP,expression
R3495 T4286 T4280 themeOf MBD1,expression
R3496 T4287 T4281 themeOf MBD2,expression
R3497 T4288 T4275 themeOf MBD4,expression

sentences

Id Subject Object Predicate Lexical cue
T3413 0-146 Sentence denotes PCR primers and conditions for expression analysis of DNMT or MBP (DNMT1 DNMT3A, DNMT3B, MeCP, MBD1, MBD2 and MBD4) were published elsewhere (28).
T56 0-146 Sentence denotes PCR primers and conditions for expression analysis of DNMT or MBP (DNMT1 DNMT3A, DNMT3B, MeCP, MBD1, MBD2 and MBD4) were published elsewhere (28).

2_test

Id Subject Object Predicate Lexical cue
16396836-12101420-76538184 142-144 12101420 denotes 28

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T3522 0-3 NN denotes PCR
T3523 4-11 NN denotes primers
T3524 12-15 CC denotes and
T3525 16-26 NN denotes conditions
T3526 27-30 IN denotes for
T3527 31-41 NN denotes expression
T3528 42-50 NN denotes analysis
T3529 51-53 IN denotes of
T3530 54-58 NN denotes DNMT
T3531 59-61 CC denotes or
T3532 62-65 NN denotes MBP
T3533 66-67 -LRB- denotes (
T3534 67-72 NN denotes DNMT1
T3535 73-79 NN denotes DNMT3A
T3536 79-80 -COMMA- denotes ,
T3537 81-87 NN denotes DNMT3B
T3538 87-88 -COMMA- denotes ,
T3539 89-93 NN denotes MeCP
T3540 93-94 -COMMA- denotes ,
T3541 95-99 NN denotes MBD1
T3542 99-100 -COMMA- denotes ,
T3543 101-105 NN denotes MBD2
T3544 106-109 CC denotes and
T3545 110-114 NN denotes MBD4
T3546 114-115 -RRB- denotes )
T3547 116-120 VB denotes were
T3548 121-130 VB denotes published
T3549 131-140 RB denotes elsewhere
T3550 141-142 -LRB- denotes (
T3551 142-144 CD denotes 28
T3552 144-145 -RRB- denotes )
R2821 T3523 T3522 arg1Of primers,PCR
R2822 T3523 T3524 arg1Of primers,and
R2823 T3524 T3526 arg1Of and,for
R2824 T3524 T3547 arg1Of and,were
R2825 T3524 T3548 arg2Of and,published
R2826 T3525 T3524 arg2Of conditions,and
R2827 T3528 T3526 arg2Of analysis,for
R2828 T3528 T3527 arg1Of analysis,expression
R2829 T3528 T3529 arg1Of analysis,of
R2830 T3530 T3531 arg1Of DNMT,or
R2831 T3531 T3529 arg2Of or,of
R2832 T3531 T3533 arg1Of or,(
R2833 T3532 T3531 arg2Of MBP,or
R2834 T3535 T3534 arg1Of DNMT3A,DNMT1
R2835 T3535 T3536 arg1Of DNMT3A,","
R2836 T3536 T3538 arg1Of ",",","
R2837 T3537 T3536 arg2Of DNMT3B,","
R2838 T3538 T3540 arg1Of ",",","
R2839 T3539 T3538 arg2Of MeCP,","
R2840 T3540 T3542 arg1Of ",",","
R2841 T3541 T3540 arg2Of MBD1,","
R2842 T3542 T3544 arg1Of ",",and
R2843 T3543 T3542 arg2Of MBD2,","
R2844 T3544 T3533 arg2Of and,(
R2845 T3545 T3544 arg2Of MBD4,and
R2846 T3546 T3533 arg3Of ),(
R2847 T3548 T3547 arg2Of published,were
R2848 T3548 T3549 arg1Of published,elsewhere
R2849 T3549 T3550 arg1Of elsewhere,(
R2850 T3551 T3550 arg2Of 28,(
R2851 T3552 T3550 arg3Of ),(

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T3878 0-3 NNP denotes PCR
T3879 4-11 NNS denotes primers
T3880 12-15 CC denotes and
T3881 16-26 NNS denotes conditions
T3882 27-30 IN denotes for
T3883 31-41 NN denotes expression
T3884 42-50 NN denotes analysis
T3885 51-53 IN denotes of
T3886 54-58 NNP denotes DNMT
T3887 59-61 CC denotes or
T3888 62-65 NNP denotes MBP
T3889 66-67 -LRB- denotes (
T3890 67-72 NNP denotes DNMT1
T3891 73-79 NNP denotes DNMT3A
T3892 79-80 , denotes ,
T3893 81-87 NNP denotes DNMT3B
T3894 87-88 , denotes ,
T3895 89-93 NNP denotes MeCP
T3896 93-94 , denotes ,
T3897 95-99 NNP denotes MBD1
T3898 99-100 , denotes ,
T3899 101-105 NNP denotes MBD2
T3900 106-109 CC denotes and
T3901 110-114 NNP denotes MBD4
T3902 114-115 -RRB- denotes )
T3903 116-120 VBD denotes were
T3904 121-130 VBN denotes published
T3905 131-140 RB denotes elsewhere
T3906 141-142 -LRB- denotes (
T3907 142-144 CD denotes 28
T3908 144-145 -RRB- denotes )
T3909 145-146 . denotes .
R3164 T3878 T3879 compound PCR,primers
R3165 T3879 T3904 nsubjpass primers,published
R3166 T3880 T3879 cc and,primers
R3167 T3881 T3879 conj conditions,primers
R3168 T3882 T3879 prep for,primers
R3169 T3883 T3884 compound expression,analysis
R3170 T3884 T3882 pobj analysis,for
R3171 T3885 T3884 prep of,analysis
R3172 T3886 T3885 pobj DNMT,of
R3173 T3887 T3886 cc or,DNMT
R3174 T3888 T3886 conj MBP,DNMT
R3175 T3889 T3888 punct (,MBP
R3176 T3890 T3891 compound DNMT1,DNMT3A
R3177 T3891 T3888 appos DNMT3A,MBP
R3178 T3892 T3891 punct ",",DNMT3A
R3179 T3893 T3891 conj DNMT3B,DNMT3A
R3180 T3894 T3893 punct ",",DNMT3B
R3181 T3895 T3893 conj MeCP,DNMT3B
R3182 T3896 T3895 punct ",",MeCP
R3183 T3897 T3895 conj MBD1,MeCP
R3184 T3898 T3897 punct ",",MBD1
R3185 T3899 T3897 conj MBD2,MBD1
R3186 T3900 T3899 cc and,MBD2
R3187 T3901 T3899 conj MBD4,MBD2
R3188 T3902 T3888 punct ),MBP
R3189 T3903 T3904 auxpass were,published
R3190 T3904 T3904 ROOT published,published
R3191 T3905 T3904 advmod elsewhere,published
R3192 T3906 T3904 punct (,published
R3193 T3907 T3904 npadvmod 28,published
R3194 T3908 T3904 punct ),published
R3195 T3909 T3904 punct .,published

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T4299 54-58 Protein denotes DNMT
T4300 62-65 Protein denotes MBP
T4301 67-79 Protein denotes DNMT1 DNMT3A
T4302 81-87 Protein denotes DNMT3B
T4303 89-93 Protein denotes MeCP
T4304 95-99 Protein denotes MBD1
T4305 101-105 Protein denotes MBD2
T4306 110-114 Protein denotes MBD4
T4307 31-41 Gene_expression denotes expression
T4308 31-41 Gene_expression denotes expression
T4309 31-41 Gene_expression denotes expression
T4310 31-41 Gene_expression denotes expression
T4311 31-41 Gene_expression denotes expression
T4312 31-41 Gene_expression denotes expression
T4313 31-41 Gene_expression denotes expression
T4314 31-41 Gene_expression denotes expression
R3506 T4304 T4312 themeOf MBD1,expression
R3507 T4305 T4313 themeOf MBD2,expression
R3508 T4306 T4314 themeOf MBD4,expression
R3501 T4299 T4307 themeOf DNMT,expression
R3502 T4300 T4308 themeOf MBP,expression
R3503 T4301 T4309 themeOf DNMT1 DNMT3A,expression
R3504 T4302 T4310 themeOf DNMT3B,expression
R3505 T4303 T4311 themeOf MeCP,expression

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue Speculation
T3425 31-41 Gene_expression denotes expression true
T3429 31-41 Gene_expression denotes expression true
T3430 31-41 Gene_expression denotes expression true
T3431 31-41 Gene_expression denotes expression true
T3432 31-41 Gene_expression denotes expression true
T3433 31-41 Gene_expression denotes expression true
T3434 31-41 Gene_expression denotes expression true
T3436 110-114 Protein denotes MBD4
T3444 73-79 Protein denotes DNMT3A
T3445 81-87 Protein denotes DNMT3B
T3446 89-93 Protein denotes MeCP
T3447 95-99 Protein denotes MBD1
T3448 101-105 Protein denotes MBD2
T3449 67-72 Protein denotes DNMT1
R2743 T3444 T3430 themeOf DNMT3A,expression
R2744 T3445 T3431 themeOf DNMT3B,expression
R2745 T3446 T3432 themeOf MeCP,expression
R2746 T3447 T3433 themeOf MBD1,expression
R2747 T3448 T3434 themeOf MBD2,expression
R2748 T3449 T3429 themeOf DNMT1,expression
R2737 T3436 T3425 themeOf MBD4,expression

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T3790 54-58 P26358 denotes DNMT
T3791 67-72 P26358 denotes DNMT1
T3792 73-79 Q9Y6K1 denotes DNMT3A
T3793 81-87 Q9UBC3 denotes DNMT3B
T3794 89-93 P51608 denotes MeCP
T3795 95-99 Q9UIS9 denotes MBD1
T3796 101-105 Q9UBB5 denotes MBD2
T3797 110-114 O95243 denotes MBD4

test2

Id Subject Object Predicate Lexical cue Speculation
T3394 31-41 Gene_expression denotes expression true
T3395 67-72 Protein denotes DNMT1 true
T3396 73-79 Protein denotes DNMT3A true
T3397 81-87 Protein denotes DNMT3B true
T3398 89-93 Protein denotes MeCP true
T3399 95-99 Protein denotes MBD1 true
T3400 101-105 Protein denotes MBD2
T3401 110-114 Protein denotes MBD4
R2726 T3395 T3394 themeOf DNMT1,expression
R2727 T3396 T3394 themeOf DNMT3A,expression
R2728 T3397 T3394 themeOf DNMT3B,expression
R2729 T3398 T3394 themeOf MeCP,expression
R2730 T3399 T3394 themeOf MBD1,expression
R2731 T3400 T3394 themeOf MBD2,expression
R2732 T3401 T3394 themeOf MBD4,expression