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PMC:1310901 / 6789-6989 JSONTXT

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bionlp-st-ge-2016-reference-eval

Id Subject Object Predicate Lexical cue
T4319 62-77 Transcription denotes transcriptional
T4330 56-61 Protein denotes IRF-4
R3510 T4330 T4319 themeOf IRF-4,transcriptional

events-check-again

Id Subject Object Predicate Lexical cue
T4269 56-61 Protein denotes IRF-4
T4270 62-77 Transcription denotes transcriptional
R3488 T4269 T4270 themeOf IRF-4,transcriptional

GO-CC

Id Subject Object Predicate Lexical cue
T4180 108-113 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T3408 21-40 Sentence denotes Expression analysis
T3409 41-175 Sentence denotes To analyze the IRF-4 transcriptional level, RNA was extracted from cells using the commercial RNAzol-kit (Paesel, Frankfurt, Germany).
T51 21-40 Sentence denotes Expression analysis
T52 41-175 Sentence denotes To analyze the IRF-4 transcriptional level, RNA was extracted from cells using the commercial RNAzol-kit (Paesel, Frankfurt, Germany).

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T3188 2-5 DT denotes the
T3189 6-18 NN denotes manufacturer
T3450 21-31 NN denotes Expression
T3451 32-40 NN denotes analysis
T3452 41-43 TO denotes To
T3453 44-51 VB denotes analyze
T3454 52-55 DT denotes the
T3455 56-61 NN denotes IRF-4
T3456 62-77 JJ denotes transcriptional
T3457 78-83 NN denotes level
T3458 83-84 -COMMA- denotes ,
T3459 85-88 NN denotes RNA
T3460 89-92 VB denotes was
T3461 93-102 VB denotes extracted
T3462 103-107 IN denotes from
T3463 108-113 NN denotes cells
T3464 114-119 VB denotes using
T3465 120-123 DT denotes the
T3466 124-134 JJ denotes commercial
T3467 135-145 NN denotes RNAzol-kit
T3468 146-147 -LRB- denotes (
T3469 147-153 NNP denotes Paesel
T3470 153-154 -COMMA- denotes ,
T3471 155-164 NNP denotes Frankfurt
T3472 164-165 -COMMA- denotes ,
T3473 166-173 NNP denotes Germany
T3474 173-174 -RRB- denotes )
T3475 176-178 DT denotes An
T3476 179-186 NN denotes aliquot
T3477 187-189 IN denotes of
T3478 190-191 CD denotes 1
T3479 192-194 NN denotes μg
T3480 195-200 JJ denotes total
R2560 T3189 T3188 arg1Of manufacturer,the
R2749 T3451 T3450 arg1Of analysis,Expression
R2750 T3453 T3452 arg1Of analyze,To
R2751 T3457 T3453 arg2Of level,analyze
R2752 T3457 T3454 arg1Of level,the
R2753 T3457 T3455 arg1Of level,IRF-4
R2754 T3457 T3456 arg1Of level,transcriptional
R2755 T3459 T3453 arg1Of RNA,analyze
R2756 T3459 T3460 arg1Of RNA,was
R2757 T3459 T3461 arg2Of RNA,extracted
R2758 T3461 T3452 modOf extracted,To
R2759 T3461 T3458 arg1Of extracted,","
R2760 T3461 T3460 arg2Of extracted,was
R2761 T3461 T3462 arg1Of extracted,from
R2762 T3463 T3462 arg2Of cells,from
R2763 T3463 T3464 arg1Of cells,using
R2764 T3467 T3464 arg2Of RNAzol-kit,using
R2765 T3467 T3465 arg1Of RNAzol-kit,the
R2766 T3467 T3466 arg1Of RNAzol-kit,commercial
R2767 T3467 T3468 arg1Of RNAzol-kit,(
R2768 T3469 T3470 arg1Of Paesel,","
R2769 T3470 T3468 arg2Of ",",(
R2770 T3470 T3472 arg1Of ",",","
R2771 T3471 T3470 arg2Of Frankfurt,","
R2772 T3473 T3472 arg2Of Germany,","
R2773 T3474 T3468 arg3Of ),(
R2774 T3476 T3475 arg1Of aliquot,An
R2775 T3476 T3477 arg1Of aliquot,of

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T3337 2-5 DT denotes the
T3338 6-18 NN denotes manufacturer
T3339 18-19 . denotes .
T3802 21-31 NN denotes Expression
T3803 32-40 NN denotes analysis
T3804 41-43 TO denotes To
T3805 44-51 VB denotes analyze
T3806 52-55 DT denotes the
T3807 56-61 NN denotes IRF-4
T3808 62-77 JJ denotes transcriptional
T3809 78-83 NN denotes level
T3810 83-84 , denotes ,
T3811 85-88 NNP denotes RNA
T3812 89-92 VBD denotes was
T3813 93-102 VBN denotes extracted
T3814 103-107 IN denotes from
T3815 108-113 NNS denotes cells
T3816 114-119 VBG denotes using
T3817 120-123 DT denotes the
T3818 124-134 JJ denotes commercial
T3819 135-145 NN denotes RNAzol-kit
T3820 146-147 -LRB- denotes (
T3821 147-153 NNP denotes Paesel
T3822 153-154 , denotes ,
T3823 155-164 NNP denotes Frankfurt
T3824 164-165 , denotes ,
T3825 166-173 NNP denotes Germany
T3826 173-174 -RRB- denotes )
T3827 174-175 . denotes .
T3828 176-178 DT denotes An
T3829 179-186 NN denotes aliquot
T3830 187-189 IN denotes of
T3831 190-191 CD denotes 1
T3832 192-194 NN denotes μg
T3833 195-200 JJ denotes total
R2706 T3337 T3338 det the,manufacturer
R3088 T3802 T3803 compound Expression,analysis
R3089 T3803 T3813 nsubjpass analysis,extracted
R3090 T3804 T3805 aux To,analyze
R3091 T3805 T3813 advcl analyze,extracted
R3092 T3806 T3809 det the,level
R3093 T3807 T3809 nmod IRF-4,level
R3094 T3808 T3809 amod transcriptional,level
R3095 T3809 T3805 dobj level,analyze
R3096 T3810 T3813 punct ",",extracted
R3097 T3811 T3813 nsubjpass RNA,extracted
R3098 T3812 T3813 auxpass was,extracted
R3099 T3813 T3813 ROOT extracted,extracted
R3100 T3814 T3813 prep from,extracted
R3101 T3815 T3814 pobj cells,from
R3102 T3816 T3813 advcl using,extracted
R3103 T3817 T3819 det the,RNAzol-kit
R3104 T3818 T3819 amod commercial,RNAzol-kit
R3105 T3819 T3816 dobj RNAzol-kit,using
R3106 T3820 T3819 punct (,RNAzol-kit
R3107 T3821 T3819 appos Paesel,RNAzol-kit
R3108 T3822 T3821 punct ",",Paesel
R3109 T3823 T3821 npadvmod Frankfurt,Paesel
R3110 T3824 T3823 punct ",",Frankfurt
R3111 T3825 T3823 conj Germany,Frankfurt
R3112 T3826 T3821 punct ),Paesel
R3113 T3827 T3813 punct .,extracted
R3114 T3828 T3829 det An,aliquot
R3116 T3830 T3829 prep of,aliquot
R3117 T3831 T3832 nummod 1,μg
R3118 T3832 T3830 pobj μg,of

GO-BP

Id Subject Object Predicate Lexical cue
T3421 62-77 http://purl.obolibrary.org/obo/GO_0006351 denotes transcriptional

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T4295 56-61 Protein denotes IRF-4

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T3424 62-77 Transcription denotes transcriptional
T3435 56-61 Protein denotes IRF-4
R2736 T3435 T3424 themeOf IRF-4,transcriptional

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T3787 56-61 Q15306 denotes IRF-4

test2

Id Subject Object Predicate Lexical cue
T3389 56-61 Protein denotes IRF-4
T3390 62-77 Transcription denotes transcriptional
R2723 T3389 T3390 themeOf IRF-4,transcriptional