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PMC:1310901 / 6311-6734 JSONTXT

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sentences

Id Subject Object Predicate Lexical cue
T3057 31-72 Sentence denotes 5′-CCAGGACCTCAGGAGGCCAGTCA-3′; 2-forward:
T3058 73-116 Sentence denotes 5′-AGCGGTGAAACTGAGAGTGCGAGGT-3′, 2-reverse:
T3059 117-144 Sentence denotes 5′-GCCACATCGCTGCAGTTTAG-3′.
T3060 145-242 Sentence denotes The products were cloned with the ‘TOPO TA cloning kit’ (Invitrogen, Groningen, The Netherlands).
T46 31-72 Sentence denotes 5′-CCAGGACCTCAGGAGGCCAGTCA-3′; 2-forward:
T47 73-116 Sentence denotes 5′-AGCGGTGAAACTGAGAGTGCGAGGT-3′, 2-reverse:
T48 117-144 Sentence denotes 5′-GCCACATCGCTGCAGTTTAG-3′.
T49 145-242 Sentence denotes The products were cloned with the ‘TOPO TA cloning kit’ (Invitrogen, Groningen, The Netherlands).

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T3117 18-19 -COMMA- denotes ,
T3118 20-29 JJ denotes 1-reverse
T3119 29-30 -COLON- denotes :
T3120 31-60 NN denotes 5′-CCAGGACCTCAGGAGGCCAGTCA-3′
T3121 60-61 -COLON- denotes ;
T3122 62-71 CD denotes 2-forward
T3123 71-72 -COLON- denotes :
T3124 73-104 JJ denotes 5′-AGCGGTGAAACTGAGAGTGCGAGGT-3′
T3125 104-105 -COMMA- denotes ,
T3126 106-115 JJ denotes 2-reverse
T3127 115-116 -COLON- denotes :
T3128 117-143 NN denotes 5′-GCCACATCGCTGCAGTTTAG-3′
T3129 145-148 DT denotes The
T3130 149-157 NN denotes products
T3131 158-162 VB denotes were
T3132 163-169 VB denotes cloned
T3133 170-174 IN denotes with
T3134 175-178 DT denotes the
T3135 179-184 NN denotes ‘TOPO
T3136 185-187 NN denotes TA
T3137 188-195 NN denotes cloning
T3138 196-200 NN denotes kit’
T3139 201-202 -LRB- denotes (
T3140 202-212 NN denotes Invitrogen
T3141 212-213 -COMMA- denotes ,
T3142 214-223 NN denotes Groningen
T3143 223-224 -COMMA- denotes ,
T3144 225-228 DT denotes The
T3145 229-240 NNP denotes Netherlands
T3146 240-241 -RRB- denotes )
T3147 243-248 IN denotes After
T3148 249-258 JJ denotes bacterial
T3149 259-272 NN denotes amplification
T3150 273-275 IN denotes of
T3151 276-279 DT denotes the
T3152 280-286 VB denotes cloned
T3153 287-290 NN denotes PCR
T3154 291-300 NN denotes fragments
T3155 301-303 IN denotes by
T3156 304-312 JJ denotes standard
T3157 313-323 NN denotes procedures
T3158 323-324 -COMMA- denotes ,
T3159 325-327 IN denotes at
T3160 328-333 JJ denotes least
T3161 334-339 CD denotes three
T3162 340-346 NN denotes clones
T3163 347-351 IN denotes from
T3164 352-356 DT denotes each
T3165 357-363 NN denotes sample
T3166 364-368 VB denotes were
T3167 369-378 VB denotes sequenced
T3168 379-383 IN denotes with
T3169 384-386 DT denotes an
T3170 387-396 VB denotes automated
T3171 397-406 NN denotes sequencer
T3172 407-408 -LRB- denotes (
T3173 408-411 NNP denotes ABI
T3174 412-417 NNP denotes Prism
T3175 418-421 CD denotes 377
T3176 421-422 -COMMA- denotes ,
R2492 T3117 T3119 arg1Of ",",:
R2493 T3118 T3117 arg2Of 1-reverse,","
R2494 T3120 T3121 arg1Of 5′-CCAGGACCTCAGGAGGCCAGTCA-3′,;
R2495 T3121 T3123 arg1Of ;,:
R2496 T3122 T3121 arg2Of 2-forward,;
R2497 T3124 T3125 arg1Of 5′-AGCGGTGAAACTGAGAGTGCGAGGT-3′,","
R2498 T3125 T3127 arg1Of ",",:
R2499 T3126 T3125 arg2Of 2-reverse,","
R2500 T3130 T3129 arg1Of products,The
R2501 T3130 T3131 arg1Of products,were
R2502 T3130 T3132 arg2Of products,cloned
R2503 T3132 T3131 arg2Of cloned,were
R2504 T3132 T3133 arg1Of cloned,with
R2505 T3138 T3133 arg2Of kit’,with
R2506 T3138 T3134 arg1Of kit’,the
R2507 T3138 T3135 arg1Of kit’,‘TOPO
R2508 T3138 T3136 arg1Of kit’,TA
R2509 T3138 T3137 arg1Of kit’,cloning
R2510 T3138 T3139 arg1Of kit’,(
R2511 T3140 T3139 arg2Of Invitrogen,(
R2512 T3140 T3141 arg1Of Invitrogen,","
R2513 T3140 T3143 arg1Of Invitrogen,","
R2514 T3142 T3141 arg2Of Groningen,","
R2515 T3145 T3143 arg2Of Netherlands,","
R2516 T3145 T3144 arg1Of Netherlands,The
R2517 T3146 T3139 arg3Of ),(
R2518 T3149 T3147 arg2Of amplification,After
R2519 T3149 T3148 arg1Of amplification,bacterial
R2520 T3149 T3150 arg1Of amplification,of
R2521 T3149 T3155 arg1Of amplification,by
R2522 T3154 T3150 arg2Of fragments,of
R2523 T3154 T3151 arg1Of fragments,the
R2524 T3154 T3152 arg2Of fragments,cloned
R2525 T3154 T3153 arg1Of fragments,PCR
R2526 T3157 T3155 arg2Of procedures,by
R2527 T3157 T3156 arg1Of procedures,standard
R2528 T3161 T3159 arg1Of three,at
R2529 T3161 T3160 arg1Of three,least
R2530 T3162 T3161 arg1Of clones,three
R2531 T3162 T3163 arg1Of clones,from
R2532 T3162 T3166 arg1Of clones,were
R2533 T3162 T3167 arg2Of clones,sequenced
R2534 T3165 T3163 arg2Of sample,from
R2535 T3165 T3164 arg1Of sample,each
R2536 T3167 T3147 arg1Of sequenced,After
R2537 T3167 T3158 arg1Of sequenced,","
R2538 T3167 T3166 arg2Of sequenced,were
R2539 T3167 T3168 arg1Of sequenced,with
R2540 T3167 T3172 arg1Of sequenced,(
R2542 T3171 T3168 arg2Of sequencer,with
R2543 T3171 T3169 arg1Of sequencer,an
R2544 T3171 T3170 arg2Of sequencer,automated
R2545 T3174 T3173 arg1Of Prism,ABI
R2546 T3174 T3175 arg1Of Prism,377
R2547 T3174 T3176 arg1Of Prism,","

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T3251 17-18 NN denotes ′
T3252 18-19 , denotes ,
T3253 20-29 JJ denotes 1-reverse
T3254 29-30 : denotes :
T3255 31-32 CD denotes 5
T3256 32-33 SYM denotes ′
T3257 33-34 : denotes -
T3258 34-59 NN denotes CCAGGACCTCAGGAGGCCAGTCA-3
T3259 59-60 NN denotes ′
T3260 60-61 : denotes ;
T3261 62-71 JJ denotes 2-forward
T3262 71-72 : denotes :
T3263 73-74 CD denotes 5
T3264 74-75 SYM denotes ′
T3265 75-76 : denotes -
T3266 76-103 NN denotes AGCGGTGAAACTGAGAGTGCGAGGT-3
T3267 103-104 NN denotes ′
T3268 104-105 , denotes ,
T3269 106-115 JJ denotes 2-reverse
T3270 115-116 : denotes :
T3271 117-118 CD denotes 5
T3272 118-119 SYM denotes ′
T3273 119-120 : denotes -
T3274 120-142 NN denotes GCCACATCGCTGCAGTTTAG-3
T3275 142-143 NN denotes ′
T3276 143-144 . denotes .
T3277 145-148 DT denotes The
T3278 149-157 NNS denotes products
T3279 158-162 VBD denotes were
T3280 163-169 VBN denotes cloned
T3281 170-174 IN denotes with
T3282 175-178 DT denotes the
T3283 180-184 NNP denotes TOPO
T3284 185-187 NNP denotes TA
T3285 188-195 VBG denotes cloning
T3286 196-199 NN denotes kit
T3287 201-202 -LRB- denotes (
T3288 202-212 NNP denotes Invitrogen
T3289 212-213 , denotes ,
T3290 214-223 NNP denotes Groningen
T3291 223-224 , denotes ,
T3292 225-228 DT denotes The
T3293 229-240 NNP denotes Netherlands
T3294 240-241 -RRB- denotes )
T3295 241-242 . denotes .
T3296 243-248 IN denotes After
T3297 249-258 JJ denotes bacterial
T3298 259-272 NN denotes amplification
T3299 273-275 IN denotes of
T3300 276-279 DT denotes the
T3301 280-286 VBN denotes cloned
T3302 287-290 NNP denotes PCR
T3303 291-300 NNS denotes fragments
T3304 301-303 IN denotes by
T3305 304-312 JJ denotes standard
T3306 313-323 NNS denotes procedures
T3307 323-324 , denotes ,
T3308 325-327 IN denotes at
T3309 328-333 JJS denotes least
T3310 334-339 CD denotes three
T3311 340-346 NNS denotes clones
T3312 347-351 IN denotes from
T3313 352-356 DT denotes each
T3314 357-363 NN denotes sample
T3315 364-368 VBD denotes were
T3316 369-378 VBN denotes sequenced
T3317 379-383 IN denotes with
T3318 384-386 DT denotes an
T3319 387-396 VBN denotes automated
T3320 397-406 NN denotes sequencer
T3321 407-408 -LRB- denotes (
T3322 408-411 NNP denotes ABI
T3323 412-417 NNP denotes Prism
T3324 418-421 CD denotes 377
T3325 421-422 , denotes ,
R2620 T3251 T3275 dep ′,′
R2621 T3252 T3251 punct ",",′
R2622 T3253 T3275 dep 1-reverse,′
R2623 T3254 T3255 punct :,5
R2624 T3255 T3253 nummod 5,1-reverse
R2625 T3256 T3255 punct ′,5
R2626 T3257 T3258 punct -,CCAGGACCTCAGGAGGCCAGTCA-3
R2627 T3258 T3259 compound CCAGGACCTCAGGAGGCCAGTCA-3,′
R2628 T3259 T3255 dep ′,5
R2629 T3260 T3275 punct ;,′
R2630 T3261 T3275 amod 2-forward,′
R2631 T3262 T3267 punct :,′
R2632 T3263 T3267 nummod 5,′
R2633 T3264 T3266 punct ′,AGCGGTGAAACTGAGAGTGCGAGGT-3
R2634 T3265 T3266 punct -,AGCGGTGAAACTGAGAGTGCGAGGT-3
R2635 T3266 T3267 compound AGCGGTGAAACTGAGAGTGCGAGGT-3,′
R2636 T3267 T3275 nmod ′,′
R2637 T3268 T3267 punct ",",′
R2638 T3269 T3275 nmod 2-reverse,′
R2639 T3270 T3271 punct :,5
R2640 T3271 T3269 nummod 5,2-reverse
R2641 T3272 T3274 punct ′,GCCACATCGCTGCAGTTTAG-3
R2642 T3273 T3274 punct -,GCCACATCGCTGCAGTTTAG-3
R2643 T3274 T3275 compound GCCACATCGCTGCAGTTTAG-3,′
R2646 T3277 T3278 det The,products
R2647 T3278 T3280 nsubjpass products,cloned
R2648 T3279 T3280 auxpass were,cloned
R2649 T3280 T3280 ROOT cloned,cloned
R2650 T3281 T3280 prep with,cloned
R2651 T3282 T3286 det the,kit
R2652 T3283 T3284 compound TOPO,TA
R2653 T3284 T3285 nsubj TA,cloning
R2654 T3285 T3286 amod cloning,kit
R2655 T3286 T3281 pobj kit,with
R2656 T3287 T3286 punct (,kit
R2657 T3288 T3286 appos Invitrogen,kit
R2658 T3289 T3288 punct ",",Invitrogen
R2659 T3290 T3288 conj Groningen,Invitrogen
R2660 T3291 T3290 punct ",",Groningen
R2661 T3292 T3293 det The,Netherlands
R2662 T3293 T3290 appos Netherlands,Groningen
R2663 T3294 T3290 punct ),Groningen
R2664 T3295 T3280 punct .,cloned
R2665 T3296 T3316 prep After,sequenced
R2666 T3297 T3298 amod bacterial,amplification
R2667 T3298 T3296 pobj amplification,After
R2668 T3299 T3298 prep of,amplification
R2669 T3300 T3303 det the,fragments
R2670 T3301 T3303 amod cloned,fragments
R2671 T3302 T3303 compound PCR,fragments
R2672 T3303 T3299 pobj fragments,of
R2673 T3304 T3298 prep by,amplification
R2674 T3305 T3306 amod standard,procedures
R2675 T3306 T3304 pobj procedures,by
R2676 T3307 T3316 punct ",",sequenced
R2677 T3308 T3309 advmod at,least
R2678 T3309 T3310 advmod least,three
R2679 T3310 T3311 nummod three,clones
R2680 T3311 T3316 nsubjpass clones,sequenced
R2681 T3312 T3311 prep from,clones
R2682 T3313 T3314 det each,sample
R2683 T3314 T3312 pobj sample,from
R2684 T3315 T3316 auxpass were,sequenced
R2685 T3316 T3316 ROOT sequenced,sequenced
R2686 T3317 T3316 prep with,sequenced
R2687 T3318 T3320 det an,sequencer
R2688 T3319 T3320 amod automated,sequencer
R2689 T3320 T3317 pobj sequencer,with
R2690 T3321 T3320 punct (,sequencer
R2691 T3322 T3323 compound ABI,Prism
R2692 T3323 T3320 appos Prism,sequencer
R2693 T3324 T3323 nummod 377,Prism
R2694 T3325 T3323 punct ",",Prism