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PMC:1310901 / 4240-4450 JSONTXT

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bionlp-st-ge-2016-reference-eval

Id Subject Object Predicate Lexical cue
T2653 32-40 Regulation denotes regulate
T2654 41-51 Gene_expression denotes expression
T2655 32-40 Regulation denotes regulate
T2656 41-51 Gene_expression denotes expression
T2687 59-64 Protein denotes c-abl
T2688 70-73 Protein denotes bcr
T2689 136-141 Protein denotes c-abl
R2074 T2654 T2653 themeOf expression,regulate
R2075 T2656 T2655 themeOf expression,regulate
R2101 T2687 T2654 themeOf c-abl,expression
R2102 T2688 T2656 themeOf bcr,expression

events-check-again

Id Subject Object Predicate Lexical cue
T2551 32-40 Regulation denotes regulate
T2552 32-40 Regulation denotes regulate
T2553 41-51 Gene_expression denotes expression
T2554 41-51 Gene_expression denotes expression
T2555 59-64 Protein denotes c-abl
T2556 70-73 Protein denotes bcr
T2557 136-141 Protein denotes c-abl
R2038 T2553 T2552 themeOf expression,regulate
R2039 T2554 T2551 themeOf expression,regulate
R2041 T2555 T2553 themeOf c-abl,expression
R2042 T2556 T2554 themeOf bcr,expression

sentences

Id Subject Object Predicate Lexical cue
T1070 0-210 Sentence denotes In CML, methylation is known to regulate expression of the c-abl, the bcr gene and others (20–23), and the extent of methylation in the c-abl promoter has been shown to be associated with advanced disease (24).
T28 0-210 Sentence denotes In CML, methylation is known to regulate expression of the c-abl, the bcr gene and others (20–23), and the extent of methylation in the c-abl promoter has been shown to be associated with advanced disease (24).

2_test

Id Subject Object Predicate Lexical cue
16396836-7938018-76538177 91-93 7938018 denotes 20
16396836-8822945-76538177 91-93 8822945 denotes 20
16396836-10068681-76538177 91-93 10068681 denotes 20
16396836-10498618-76538177 91-93 10498618 denotes 20
16396836-9389709-76538178 206-208 9389709 denotes 24

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1530 0-2 IN denotes In
T1531 3-6 NN denotes CML
T1532 6-7 -COMMA- denotes ,
T1533 8-19 NN denotes methylation
T1534 20-22 VB denotes is
T1535 23-28 VB denotes known
T1536 29-31 TO denotes to
T1537 32-40 VB denotes regulate
T1538 41-51 NN denotes expression
T1539 52-54 IN denotes of
T1540 55-58 DT denotes the
T1541 59-64 NN denotes c-abl
T1542 64-65 -COMMA- denotes ,
T1543 66-69 DT denotes the
T1544 70-73 NN denotes bcr
T1545 74-78 NN denotes gene
T1546 79-82 CC denotes and
T1547 83-89 NN denotes others
T1548 90-91 -LRB- denotes (
T1549 91-96 CD denotes 20–23
T1550 96-97 -RRB- denotes )
T1551 97-98 -COMMA- denotes ,
T1552 99-102 CC denotes and
T1553 103-106 DT denotes the
T1554 107-113 NN denotes extent
T1555 114-116 IN denotes of
T1556 117-128 NN denotes methylation
T1557 129-131 IN denotes in
T1558 132-135 DT denotes the
T1559 136-141 NN denotes c-abl
T1560 142-150 NN denotes promoter
T1561 151-154 VB denotes has
T1562 155-159 VB denotes been
T1563 160-165 VB denotes shown
T1564 166-168 TO denotes to
T1565 169-171 VB denotes be
T1566 172-182 VB denotes associated
T1567 183-187 IN denotes with
T1568 188-196 VB denotes advanced
T1569 197-204 NN denotes disease
T1570 205-206 -LRB- denotes (
T1571 206-208 CD denotes 24
T1572 208-209 -RRB- denotes )
R1196 T1531 T1530 arg2Of CML,In
R1197 T1533 T1534 arg1Of methylation,is
R1198 T1533 T1535 arg2Of methylation,known
R1199 T1533 T1537 arg1Of methylation,regulate
R1200 T1535 T1534 arg2Of known,is
R1201 T1535 T1552 arg1Of known,and
R1202 T1537 T1535 arg3Of regulate,known
R1203 T1537 T1536 arg1Of regulate,to
R1204 T1538 T1537 arg2Of expression,regulate
R1205 T1538 T1539 arg1Of expression,of
R1206 T1541 T1540 arg1Of c-abl,the
R1207 T1541 T1542 arg1Of c-abl,","
R1208 T1542 T1546 arg1Of ",",and
R1209 T1545 T1542 arg2Of gene,","
R1210 T1545 T1543 arg1Of gene,the
R1211 T1545 T1544 arg1Of gene,bcr
R1212 T1546 T1539 arg2Of and,of
R1213 T1547 T1546 arg2Of others,and
R1214 T1547 T1548 arg1Of others,(
R1215 T1549 T1548 arg2Of 20–23,(
R1216 T1550 T1548 arg3Of ),(
R1217 T1552 T1530 arg1Of and,In
R1218 T1552 T1532 arg1Of and,","
R1219 T1552 T1551 arg1Of and,","
R1220 T1554 T1553 arg1Of extent,the
R1221 T1554 T1555 arg1Of extent,of
R1222 T1554 T1557 arg1Of extent,in
R1223 T1554 T1561 arg1Of extent,has
R1224 T1554 T1562 arg1Of extent,been
R1225 T1554 T1563 arg2Of extent,shown
R1226 T1554 T1565 arg1Of extent,be
R1227 T1554 T1566 arg2Of extent,associated
R1228 T1556 T1555 arg2Of methylation,of
R1229 T1560 T1557 arg2Of promoter,in
R1230 T1560 T1558 arg1Of promoter,the
R1231 T1560 T1559 arg1Of promoter,c-abl
R1232 T1563 T1552 arg2Of shown,and
R1233 T1563 T1561 arg2Of shown,has
R1234 T1563 T1562 arg2Of shown,been
R1235 T1566 T1563 arg3Of associated,shown
R1236 T1566 T1564 arg1Of associated,to
R1237 T1566 T1565 arg2Of associated,be
R1238 T1566 T1567 arg1Of associated,with
R1239 T1569 T1567 arg2Of disease,with
R1240 T1569 T1568 arg2Of disease,advanced
R1241 T1569 T1570 arg1Of disease,(
R1242 T1571 T1570 arg2Of 24,(
R1243 T1572 T1570 arg3Of ),(

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T2176 0-2 IN denotes In
T2177 3-6 NNP denotes CML
T2178 6-7 , denotes ,
T2179 8-19 NN denotes methylation
T2180 20-22 VBZ denotes is
T2181 23-28 VBN denotes known
T2182 29-31 TO denotes to
T2183 32-40 VB denotes regulate
T2184 41-51 NN denotes expression
T2185 52-54 IN denotes of
T2186 55-58 DT denotes the
T2187 59-64 NN denotes c-abl
T2188 64-65 , denotes ,
T2189 66-69 DT denotes the
T2190 70-73 NN denotes bcr
T2191 74-78 NN denotes gene
T2192 79-82 CC denotes and
T2193 83-89 NNS denotes others
T2194 90-91 -LRB- denotes (
T2195 91-93 CD denotes 20
T2196 94-96 CD denotes 23
T2197 96-97 -RRB- denotes )
T2198 97-98 , denotes ,
T2199 99-102 CC denotes and
T2200 103-106 DT denotes the
T2201 107-113 NN denotes extent
T2202 114-116 IN denotes of
T2203 117-128 NN denotes methylation
T2204 129-131 IN denotes in
T2205 132-135 DT denotes the
T2206 136-141 JJ denotes c-abl
T2207 142-150 NN denotes promoter
T2208 151-154 VBZ denotes has
T2209 155-159 VBN denotes been
T2210 160-165 VBN denotes shown
T2211 166-168 TO denotes to
T2212 169-171 VB denotes be
T2213 172-182 VBN denotes associated
T2214 183-187 IN denotes with
T2215 188-196 JJ denotes advanced
T2216 197-204 NN denotes disease
T2217 205-206 -LRB- denotes (
T2218 206-208 CD denotes 24
T2219 208-209 -RRB- denotes )
T2220 209-210 . denotes .
R1720 T2176 T2181 prep In,known
R1722 T2177 T2176 pobj CML,In
R1723 T2178 T2181 punct ",",known
R1724 T2179 T2181 nsubjpass methylation,known
R1726 T2180 T2181 auxpass is,known
R1727 T2181 T2181 ROOT known,known
R1728 T2182 T2183 aux to,regulate
R1730 T2183 T2181 xcomp regulate,known
R1731 T2184 T2183 dobj expression,regulate
R1732 T2185 T2184 prep of,expression
R1734 T2186 T2187 det the,c-abl
R1735 T2187 T2185 pobj c-abl,of
R1737 T2188 T2187 punct ",",c-abl
R1738 T2189 T2191 det the,gene
R1739 T2190 T2191 compound bcr,gene
R1741 T2191 T2187 conj gene,c-abl
R1742 T2192 T2191 cc and,gene
R1743 T2193 T2191 conj others,gene
R1744 T2194 T2193 punct (,others
R1746 T2195 T2193 appos 20,others
R1748 T2196 T2193 appos 23,others
R1749 T2197 T2193 punct ),others
R1750 T2198 T2181 punct ",",known
R1751 T2199 T2181 cc and,known
R1753 T2200 T2201 det the,extent
R1754 T2201 T2210 nsubjpass extent,shown
R1755 T2202 T2201 prep of,extent
R1757 T2203 T2202 pobj methylation,of
R1758 T2204 T2201 prep in,extent
R1759 T2205 T2207 det the,promoter
R1760 T2206 T2207 amod c-abl,promoter
R1761 T2207 T2204 pobj promoter,in
R1762 T2208 T2210 aux has,shown
R1764 T2209 T2210 auxpass been,shown
R1765 T2210 T2181 conj shown,known
R1766 T2211 T2213 aux to,associated
R1769 T2212 T2213 auxpass be,associated
R1771 T2213 T2210 xcomp associated,shown
R1772 T2214 T2213 prep with,associated
R1773 T2215 T2216 amod advanced,disease
R1776 T2216 T2214 pobj disease,with
R1777 T2217 T2218 punct (,24
R1778 T2218 T2216 appos 24,disease
R1779 T2219 T2210 punct ),shown
R1780 T2220 T2181 punct .,known

GO-BP

Id Subject Object Predicate Lexical cue
T1093 8-19 http://purl.obolibrary.org/obo/GO_0032259 denotes methylation
T1094 117-128 http://purl.obolibrary.org/obo/GO_0032259 denotes methylation

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T2620 59-64 Protein denotes c-abl
T2621 70-78 Protein denotes bcr gene
T2622 136-150 Protein denotes c-abl promoter
T2623 41-51 Gene_expression denotes expression
T2624 41-51 Gene_expression denotes expression
T2625 32-40 Regulation denotes regulate
T2626 32-40 Regulation denotes regulate
R2073 T2620 T2623 themeOf c-abl,expression
R2077 T2621 T2624 themeOf bcr gene,expression
R2078 T2623 T2625 themeOf expression,regulate
R2080 T2624 T2626 themeOf expression,regulate

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T1040 32-40 Regulation denotes regulate
T1041 32-40 Regulation denotes regulate
T1042 41-51 Gene_expression denotes expression
T1043 41-51 Gene_expression denotes expression
T1044 59-64 Protein denotes c-abl
T1045 70-73 Protein denotes bcr
T1046 136-141 Protein denotes c-abl
R764 T1042 T1041 themeOf expression,regulate
R765 T1043 T1040 themeOf expression,regulate
R766 T1044 T1042 themeOf c-abl,expression
R767 T1045 T1043 themeOf bcr,expression

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T1708 59-64 P00519 denotes c-abl
T1709 61-64 P00519 denotes abl
T1710 70-73 P11274 denotes bcr
T1711 136-141 P00519 denotes c-abl
T1712 138-141 P00519 denotes abl

test2

Id Subject Object Predicate Lexical cue
T989 32-40 Regulation denotes regulate
T990 41-51 Gene_expression denotes expression
T991 59-64 Protein denotes c-abl
T992 70-73 Protein denotes bcr
T993 136-141 Protein denotes c-abl
R738 T990 T989 themeOf expression,regulate
R739 T991 T990 themeOf c-abl,expression
R740 T992 T990 themeOf bcr,expression