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PMC:1310901 / 4129-4239 JSONTXT

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bionlp-st-ge-2016-reference-eval

Id Subject Object Predicate Lexical cue
T2678 38-42 Protein denotes MGMT
T2679 44-48 Protein denotes DAPK
T2681 50-56 Protein denotes p14ARF
T2682 58-66 Protein denotes p15INK4b
T2683 68-76 Protein denotes p16INK4a
T2684 78-83 Protein denotes BRCA1
T2685 85-90 Protein denotes CDH13
T2686 95-101 Protein denotes APAF-1

events-check-again

Id Subject Object Predicate Lexical cue
T2543 38-42 Protein denotes MGMT
T2544 44-48 Protein denotes DAPK
T2545 50-56 Protein denotes p14ARF
T2546 58-66 Protein denotes p15INK4b
T2547 68-76 Protein denotes p16INK4a
T2548 78-83 Protein denotes BRCA1
T2549 85-90 Protein denotes CDH13
T2550 95-101 Protein denotes APAF-1

sentences

Id Subject Object Predicate Lexical cue
T1069 0-110 Sentence denotes Examples for such aberrated genes are MGMT, DAPK, p14ARF, p15INK4b, p16INK4a, BRCA1, CDH13 and APAF-1 (17–19).
T27 0-110 Sentence denotes Examples for such aberrated genes are MGMT, DAPK, p14ARF, p15INK4b, p16INK4a, BRCA1, CDH13 and APAF-1 (17–19).

2_test

Id Subject Object Predicate Lexical cue
16396836-11748635-76538176 103-105 11748635 denotes 17
16396836-9041182-76538176 103-105 9041182 denotes 17
16396836-12154405-76538176 103-105 12154405 denotes 17

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1506 0-8 NN denotes Examples
T1507 9-12 IN denotes for
T1508 13-17 JJ denotes such
T1509 18-27 JJ denotes aberrated
T1510 28-33 NN denotes genes
T1511 34-37 VB denotes are
T1512 38-42 NNP denotes MGMT
T1513 42-43 -COMMA- denotes ,
T1514 44-48 NNP denotes DAPK
T1515 48-49 -COMMA- denotes ,
T1516 50-56 NN denotes p14ARF
T1517 56-57 -COMMA- denotes ,
T1518 58-66 NN denotes p15INK4b
T1519 66-67 -COMMA- denotes ,
T1520 68-76 NN denotes p16INK4a
T1521 76-77 -COMMA- denotes ,
T1522 78-83 NN denotes BRCA1
T1523 83-84 -COMMA- denotes ,
T1524 85-90 NN denotes CDH13
T1525 91-94 CC denotes and
T1526 95-101 NN denotes APAF-1
T1527 102-103 -LRB- denotes (
T1528 103-108 CD denotes 17–19
T1529 108-109 -RRB- denotes )
R1173 T1506 T1507 arg1Of Examples,for
R1174 T1506 T1511 arg1Of Examples,are
R1175 T1509 T1508 arg1Of aberrated,such
R1176 T1510 T1507 arg2Of genes,for
R1177 T1510 T1509 arg1Of genes,aberrated
R1178 T1512 T1513 arg1Of MGMT,","
R1179 T1513 T1515 arg1Of ",",","
R1180 T1514 T1513 arg2Of DAPK,","
R1181 T1515 T1517 arg1Of ",",","
R1182 T1516 T1515 arg2Of p14ARF,","
R1183 T1517 T1519 arg1Of ",",","
R1184 T1518 T1517 arg2Of p15INK4b,","
R1185 T1519 T1521 arg1Of ",",","
R1186 T1520 T1519 arg2Of p16INK4a,","
R1187 T1521 T1523 arg1Of ",",","
R1188 T1522 T1521 arg2Of BRCA1,","
R1189 T1523 T1525 arg1Of ",",and
R1190 T1524 T1523 arg2Of CDH13,","
R1191 T1525 T1511 arg2Of and,are
R1192 T1526 T1525 arg2Of APAF-1,and
R1193 T1526 T1527 arg1Of APAF-1,(
R1194 T1528 T1527 arg2Of 17–19,(
R1195 T1529 T1527 arg3Of ),(

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T2150 0-8 NNS denotes Examples
T2151 9-12 IN denotes for
T2152 13-17 JJ denotes such
T2153 18-27 JJ denotes aberrated
T2154 28-33 NNS denotes genes
T2155 34-37 VBP denotes are
T2156 38-42 NNP denotes MGMT
T2157 42-43 , denotes ,
T2158 44-48 NNP denotes DAPK
T2159 48-49 , denotes ,
T2160 50-56 NNP denotes p14ARF
T2161 56-57 , denotes ,
T2162 58-66 NNP denotes p15INK4b
T2163 66-67 , denotes ,
T2164 68-76 NNP denotes p16INK4a
T2165 76-77 , denotes ,
T2166 78-83 NNP denotes BRCA1
T2167 83-84 , denotes ,
T2168 85-90 NNP denotes CDH13
T2169 91-94 CC denotes and
T2170 95-101 NNP denotes APAF-1
T2171 102-103 -LRB- denotes (
T2172 103-105 CD denotes 17
T2173 106-108 CD denotes 19
T2174 108-109 -RRB- denotes )
T2175 109-110 . denotes .
R1684 T2150 T2155 nsubj Examples,are
R1686 T2151 T2150 prep for,Examples
R1687 T2152 T2154 amod such,genes
R1688 T2153 T2154 amod aberrated,genes
R1690 T2154 T2151 pobj genes,for
R1691 T2155 T2155 ROOT are,are
R1692 T2156 T2155 attr MGMT,are
R1694 T2157 T2156 punct ",",MGMT
R1696 T2158 T2156 conj DAPK,MGMT
R1697 T2159 T2158 punct ",",DAPK
R1698 T2160 T2158 conj p14ARF,DAPK
R1699 T2161 T2160 punct ",",p14ARF
R1701 T2162 T2160 conj p15INK4b,p14ARF
R1703 T2163 T2162 punct ",",p15INK4b
R1705 T2164 T2162 conj p16INK4a,p15INK4b
R1706 T2165 T2164 punct ",",p16INK4a
R1707 T2166 T2164 conj BRCA1,p16INK4a
R1708 T2167 T2166 punct ",",BRCA1
R1709 T2168 T2166 conj CDH13,BRCA1
R1711 T2169 T2168 cc and,CDH13
R1712 T2170 T2168 conj APAF-1,CDH13
R1713 T2171 T2170 punct (,APAF-1
R1715 T2172 T2170 nummod 17,APAF-1
R1716 T2173 T2170 nummod 19,APAF-1
R1718 T2174 T2170 punct ),APAF-1
R1719 T2175 T2155 punct .,are

GO-BP

Id Subject Object Predicate Lexical cue
T1102 38-42 http://purl.obolibrary.org/obo/GO_0003908 denotes MGMT

GO-MF

Id Subject Object Predicate Lexical cue
T2354 38-42 http://purl.obolibrary.org/obo/GO_0003908 denotes MGMT

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T2612 38-42 Protein denotes MGMT
T2613 44-48 Protein denotes DAPK
T2614 50-56 Protein denotes p14ARF
T2615 58-66 Protein denotes p15INK4b
T2616 68-76 Protein denotes p16INK4a
T2617 78-83 Protein denotes BRCA1
T2618 85-90 Protein denotes CDH13
T2619 95-101 Protein denotes APAF-1

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T1032 38-42 Protein denotes MGMT
T1033 44-48 Protein denotes DAPK
T1034 50-56 Protein denotes p14ARF
T1035 58-66 Protein denotes p15INK4b
T1036 68-76 Protein denotes p16INK4a
T1037 78-83 Protein denotes BRCA1
T1038 85-90 Protein denotes CDH13
T1039 95-101 Protein denotes APAF-1

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T1700 38-42 P16455 denotes MGMT
T1701 44-48 P53355 denotes DAPK
T1702 50-56 Q8N726 denotes p14ARF
T1703 58-66 P42772 denotes p15INK4b
T1704 68-76 P42771 denotes p16INK4a
T1705 78-83 Q3B891 denotes BRCA1
T1706 85-90 P55290 denotes CDH13
T1707 95-101 O14727 denotes APAF-1

test2

Id Subject Object Predicate Lexical cue
T981 38-42 Protein denotes MGMT
T982 44-48 Protein denotes DAPK
T983 50-56 Protein denotes p14ARF
T984 58-66 Protein denotes p15INK4b
T985 68-76 Protein denotes p16INK4a
T986 78-83 Protein denotes BRCA1
T987 85-90 Protein denotes CDH13
T988 95-101 Protein denotes APAF-1