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PMC:1310901 / 34-290 JSONTXT

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bionlp-st-ge-2016-reference-eval

Id Subject Object Predicate Lexical cue
T870 21-31 Gene_expression denotes expression
T871 135-138 Protein denotes bcr
T872 139-142 Protein denotes abl

events-check-again

Id Subject Object Predicate Lexical cue
T806 21-31 Gene_expression denotes expression
T807 135-138 Protein denotes bcr
T808 139-142 Protein denotes abl

GO-CC

Id Subject Object Predicate Lexical cue
T698 44-49 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T2 113-121 Sentence denotes Abstract

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T133 7-13 NN denotes factor
T134 14-15 CD denotes 4
T135 16-20 NN denotes gene
T136 21-31 NN denotes expression
T137 32-34 IN denotes in
T138 35-43 JJ denotes leukemic
T139 44-49 NN denotes cells
T140 50-53 JJ denotes due
T141 54-56 TO denotes to
T142 57-73 NN denotes hypermethylation
T143 74-76 IN denotes of
T144 77-80 NN denotes CpG
T145 81-87 NN denotes motifs
T146 88-90 IN denotes in
T147 91-94 DT denotes the
T148 95-103 NN denotes promoter
T149 104-110 NN denotes region
T150 122-130 IN denotes Although
T151 131-134 DT denotes the
T152 135-142 NN denotes bcr-abl
T153 143-156 NN denotes translocation
T154 157-160 VB denotes has
T155 161-165 VB denotes been
T156 166-171 VB denotes shown
T157 172-174 TO denotes to
T158 175-177 VB denotes be
T159 178-181 DT denotes the
T160 182-191 JJ denotes causative
T161 192-199 JJ denotes genetic
T162 200-210 NN denotes aberration
T163 211-213 IN denotes in
T164 214-221 JJ denotes chronic
T165 222-229 JJ denotes myeloid
T166 230-238 NN denotes leukemia
T167 239-240 -LRB- denotes (
T168 240-243 NN denotes CML
T169 243-244 -RRB- denotes )
T170 244-245 -COMMA- denotes ,
T171 246-251 EX denotes there
T172 252-254 VB denotes is
R79 T166 T165 arg1Of leukemia,myeloid
R80 T166 T167 arg1Of leukemia,(
R81 T168 T167 arg2Of CML,(
R82 T169 T167 arg3Of ),(
R83 T171 T172 arg1Of there,is
R84 T172 T150 arg1Of is,Although
R85 T172 T170 arg1Of is,","
R46 T136 T133 arg1Of expression,factor
R47 T136 T134 arg1Of expression,4
R48 T136 T135 arg1Of expression,gene
R49 T139 T137 arg2Of cells,in
R50 T139 T138 arg1Of cells,leukemic
R51 T139 T140 arg1Of cells,due
R52 T140 T141 arg1Of due,to
R53 T142 T141 arg2Of hypermethylation,to
R54 T142 T143 arg1Of hypermethylation,of
R55 T145 T143 arg2Of motifs,of
R56 T145 T144 arg1Of motifs,CpG
R57 T145 T146 arg1Of motifs,in
R58 T149 T146 arg2Of region,in
R59 T149 T147 arg1Of region,the
R60 T149 T148 arg1Of region,promoter
R61 T153 T151 arg1Of translocation,the
R62 T153 T152 arg1Of translocation,bcr-abl
R63 T153 T154 arg1Of translocation,has
R64 T153 T155 arg1Of translocation,been
R65 T153 T156 arg2Of translocation,shown
R66 T153 T158 arg1Of translocation,be
R67 T156 T150 arg2Of shown,Although
R68 T156 T154 arg2Of shown,has
R69 T156 T155 arg2Of shown,been
R70 T158 T156 arg3Of be,shown
R71 T158 T157 arg1Of be,to
R72 T158 T163 arg1Of be,in
R73 T162 T158 arg2Of aberration,be
R74 T162 T159 arg1Of aberration,the
R75 T162 T160 arg1Of aberration,causative
R76 T162 T161 arg1Of aberration,genetic
R77 T166 T163 arg2Of leukemia,in
R78 T166 T164 arg1Of leukemia,chronic

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T424 7-13 NN denotes factor
T425 14-15 CD denotes 4
T426 16-20 NN denotes gene
T427 21-31 NN denotes expression
T428 32-34 IN denotes in
T429 35-43 JJ denotes leukemic
T430 44-49 NNS denotes cells
T431 50-53 JJ denotes due
T432 54-56 TO denotes to
T433 57-73 NN denotes hypermethylation
T434 74-76 IN denotes of
T435 77-80 NNP denotes CpG
T436 81-87 NNS denotes motifs
T437 88-90 IN denotes in
T438 91-94 DT denotes the
T439 95-103 NN denotes promoter
T440 104-110 NN denotes region
T441 122-130 IN denotes Although
T442 131-134 DT denotes the
T443 135-142 JJ denotes bcr-abl
T444 143-156 NN denotes translocation
T445 157-160 VBZ denotes has
T446 161-165 VBN denotes been
T447 166-171 VBN denotes shown
T448 172-174 TO denotes to
T449 175-177 VB denotes be
T450 178-181 DT denotes the
T451 182-191 JJ denotes causative
T452 192-199 JJ denotes genetic
T453 200-210 NN denotes aberration
T454 211-213 IN denotes in
T455 214-221 JJ denotes chronic
T456 222-229 JJ denotes myeloid
T457 230-238 NN denotes leukemia
T458 239-240 -LRB- denotes (
T459 240-243 NNP denotes CML
T460 243-244 -RRB- denotes )
T461 244-245 , denotes ,
T462 246-251 EX denotes there
T463 252-254 VBZ denotes is
R343 T454 T453 prep in,aberration
R344 T455 T457 amod chronic,leukemia
R345 T456 T457 amod myeloid,leukemia
R346 T457 T454 pobj leukemia,in
R347 T458 T459 punct (,CML
R348 T459 T457 appos CML,leukemia
R326 T437 T433 prep in,hypermethylation
R327 T438 T440 det the,region
R328 T439 T440 compound promoter,region
R329 T440 T437 pobj region,in
R330 T441 T447 mark Although,shown
R331 T442 T444 det the,translocation
R332 T443 T444 amod bcr-abl,translocation
R333 T444 T447 nsubjpass translocation,shown
R334 T445 T447 aux has,shown
R335 T446 T447 auxpass been,shown
R336 T447 T463 advcl shown,is
R337 T448 T449 aux to,be
R338 T449 T447 xcomp be,shown
R339 T450 T453 det the,aberration
R340 T451 T453 amod causative,aberration
R341 T452 T453 amod genetic,aberration
R342 T453 T449 attr aberration,be
R349 T460 T447 punct ),shown
R350 T461 T463 punct ",",is
R351 T462 T463 expl there,is
R352 T463 T463 ROOT is,is
R318 T429 T430 amod leukemic,cells
R319 T430 T428 pobj cells,in
R321 T432 T431 pcomp to,due
R322 T433 T432 pobj hypermethylation,to
R323 T434 T433 prep of,hypermethylation
R324 T435 T436 compound CpG,motifs
R325 T436 T434 pobj motifs,of
R314 T425 T427 nummod 4,expression
R315 T426 T427 compound gene,expression
R317 T428 T427 prep in,expression

GO-BP

Id Subject Object Predicate Lexical cue
T117 16-31 http://purl.obolibrary.org/obo/GO_0010467 denotes gene expression

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T839 21-31 Gene_expression denotes expression
T841 135-138 Protein denotes bcr
T842 139-142 Protein denotes abl

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T73 21-31 Gene_expression denotes expression
T74 135-138 Protein denotes bcr
T75 139-142 Protein denotes abl

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T393 135-138 P11274 denotes bcr
T394 139-142 P00519 denotes abl

test2

Id Subject Object Predicate Lexical cue Negation Speculation
T37 21-31 Gene_expression denotes expression true
T38 135-138 Protein denotes bcr true
T39 139-142 Protein denotes abl
T40 143-156 Localization denotes translocation
R21 T38 T40 themeOf bcr,translocation