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PMC:1310901 / 2961-3338 JSONTXT

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bionlp-st-ge-2016-reference-eval

Id Subject Object Predicate Lexical cue
T2665 41-51 Gene_expression denotes expression
T2666 116-124 Gene_expression denotes positive
T2667 160-170 Gene_expression denotes expression
T2668 190-197 Positive_regulation denotes induced
T2673 110-115 Protein denotes IRF-4
T2674 174-179 Protein denotes IRF-4
R2083 T2667 T2668 themeOf expression,induced
R2091 T2673 T2666 themeOf IRF-4,positive
R2092 T2674 T2667 themeOf IRF-4,expression

events-check-again

Id Subject Object Predicate Lexical cue Negation
T2532 41-51 Gene_expression denotes expression
T2533 110-115 Protein denotes IRF-4
T2534 116-124 Gene_expression denotes positive
T2535 160-170 Gene_expression denotes expression
T2536 174-179 Protein denotes IRF-4
T2537 190-197 Positive_regulation denotes induced true
R2037 T2533 T2534 themeOf IRF-4,positive
R2040 T2535 T2537 themeOf expression,induced
R2044 T2536 T2535 themeOf IRF-4,expression

GO-CC

Id Subject Object Predicate Lexical cue
T2361 259-263 http://purl.obolibrary.org/obo/GO_0005623 denotes cell

sentences

Id Subject Object Predicate Lexical cue
T1062 61-132 Sentence denotes Predominately B- and activated T-lymphocytes are IRF-4 positive (7–11).
T1063 133-311 Sentence denotes In contrast to other IRFs, expression of IRF-4 cannot be induced by IFNs, but by antigen stimulation, crosslinking of T- or B-cell receptors or phorbol-myristate-acetate (10,11).
T20 61-132 Sentence denotes Predominately B- and activated T-lymphocytes are IRF-4 positive (7–11).
T21 133-311 Sentence denotes In contrast to other IRFs, expression of IRF-4 cannot be induced by IFNs, but by antigen stimulation, crosslinking of T- or B-cell receptors or phorbol-myristate-acetate (10,11).

2_test

Id Subject Object Predicate Lexical cue
16396836-7797077-76538168 126-127 7797077 denotes 7
16396836-7541907-76538168 126-127 7541907 denotes 7
16396836-8657101-76538168 126-127 8657101 denotes 7
16396836-11846983-76538168 126-127 11846983 denotes 7
16396836-11846982-76538168 126-127 11846982 denotes 7
16396836-11846983-76538169 304-306 11846983 denotes 10
16396836-11846982-76538170 307-309 11846982 denotes 11

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1304 4-5 -RRB- denotes )
T1305 6-8 VB denotes is
T1306 9-12 CD denotes one
T1307 13-19 NN denotes member
T1308 20-24 IN denotes with
T1309 25-29 RB denotes very
T1310 30-40 JJ denotes restricted
T1311 41-51 NN denotes expression
T1312 52-59 NN denotes pattern
T1313 59-60 -COLON- denotes :
T1314 61-74 RB denotes Predominately
T1315 75-77 NN denotes B-
T1316 78-81 CC denotes and
T1317 82-91 VB denotes activated
T1318 92-105 NN denotes T-lymphocytes
T1319 106-109 VB denotes are
T1320 110-115 NN denotes IRF-4
T1321 116-124 JJ denotes positive
T1322 125-126 -LRB- denotes (
T1323 126-130 CD denotes 7–11
T1324 130-131 -RRB- denotes )
T1325 133-135 IN denotes In
T1326 136-144 NN denotes contrast
T1327 145-147 TO denotes to
T1328 148-153 JJ denotes other
T1329 154-158 NN denotes IRFs
T1330 158-159 -COMMA- denotes ,
T1331 160-170 NN denotes expression
T1332 171-173 IN denotes of
T1333 174-179 NN denotes IRF-4
T1334 180-183 MD denotes can
T1335 183-186 RB denotes not
T1336 187-189 VB denotes be
T1337 190-197 VB denotes induced
T1338 198-200 IN denotes by
T1339 201-205 NN denotes IFNs
T1340 205-206 -COMMA- denotes ,
T1341 207-210 CC denotes but
T1342 211-213 IN denotes by
T1343 214-221 NN denotes antigen
T1344 222-233 NN denotes stimulation
T1345 233-234 -COMMA- denotes ,
T1346 235-247 NN denotes crosslinking
T1347 248-250 IN denotes of
T1348 251-253 NN denotes T-
T1349 254-256 CC denotes or
T1350 257-263 NN denotes B-cell
T1351 264-273 NN denotes receptors
T1352 274-276 CC denotes or
T1353 277-302 NN denotes phorbol-myristate-acetate
T1354 303-304 -LRB- denotes (
T1355 304-309 CD denotes 10,11
T1356 309-310 -RRB- denotes )
T1357 312-322 JJ denotes Consistent
T1358 323-327 IN denotes with
T1359 328-331 DT denotes the
T1360 332-343 NN denotes restriction
T1361 344-346 IN denotes of
T1362 347-357 NN denotes expression
T1363 358-360 TO denotes to
T1364 361-376 JJ denotes immunocompetent
R971 T1307 T1305 arg2Of member,is
R972 T1307 T1306 arg1Of member,one
R973 T1307 T1308 arg1Of member,with
R974 T1307 T1313 arg1Of member,:
R975 T1310 T1309 arg1Of restricted,very
R976 T1312 T1308 arg2Of pattern,with
R977 T1312 T1310 arg1Of pattern,restricted
R978 T1312 T1311 arg1Of pattern,expression
R979 T1315 T1314 arg1Of B-,Predominately
R980 T1315 T1316 arg1Of B-,and
R981 T1316 T1319 arg1Of and,are
R982 T1318 T1316 arg2Of T-lymphocytes,and
R983 T1318 T1317 arg2Of T-lymphocytes,activated
R984 T1320 T1319 arg2Of IRF-4,are
R985 T1320 T1321 arg1Of IRF-4,positive
R986 T1320 T1322 arg1Of IRF-4,(
R987 T1323 T1322 arg2Of 7–11,(
R988 T1324 T1322 arg3Of ),(
R989 T1326 T1325 arg2Of contrast,In
R990 T1326 T1327 arg1Of contrast,to
R991 T1329 T1327 arg2Of IRFs,to
R992 T1329 T1328 arg1Of IRFs,other
R993 T1331 T1332 arg1Of expression,of
R994 T1331 T1334 arg1Of expression,can
R995 T1331 T1336 arg1Of expression,be
R996 T1331 T1337 arg2Of expression,induced
R997 T1333 T1332 arg2Of IRF-4,of
R998 T1337 T1325 arg1Of induced,In
R999 T1337 T1330 arg1Of induced,","
R1000 T1337 T1334 arg2Of induced,can
R1001 T1337 T1335 arg1Of induced,not
R1002 T1337 T1336 arg2Of induced,be
R1003 T1337 T1341 arg1Of induced,but
R1004 T1337 T1342 arg1Of induced,by
R1005 T1339 T1337 arg1Of IFNs,induced
R1006 T1339 T1338 arg2Of IFNs,by
R1007 T1341 T1340 arg1Of but,","
R1008 T1344 T1343 arg1Of stimulation,antigen
R1009 T1344 T1345 arg1Of stimulation,","
R1010 T1345 T1352 arg1Of ",",or
R1011 T1346 T1345 arg2Of crosslinking,","
R1012 T1346 T1347 arg1Of crosslinking,of
R1013 T1348 T1349 arg1Of T-,or
R1014 T1350 T1349 arg2Of B-cell,or
R1015 T1351 T1347 arg2Of receptors,of
R1016 T1351 T1348 arg1Of receptors,T-
R1017 T1351 T1350 arg1Of receptors,B-cell
R1018 T1352 T1342 arg2Of or,by
R1019 T1353 T1352 arg2Of phorbol-myristate-acetate,or
R1020 T1353 T1354 arg1Of phorbol-myristate-acetate,(
R1021 T1355 T1354 arg2Of "10,11",(
R1022 T1356 T1354 arg3Of ),(
R1023 T1357 T1358 arg1Of Consistent,with
R1024 T1360 T1358 arg2Of restriction,with
R1025 T1360 T1359 arg1Of restriction,the
R1026 T1360 T1361 arg1Of restriction,of
R1027 T1360 T1363 arg1Of restriction,to
R1028 T1362 T1361 arg2Of expression,of

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T1936 4-5 -RRB- denotes )
T1937 6-8 VBZ denotes is
T1938 9-12 CD denotes one
T1939 13-19 NN denotes member
T1940 20-24 IN denotes with
T1941 25-29 RB denotes very
T1942 30-40 VBN denotes restricted
T1943 41-51 NN denotes expression
T1944 52-59 NN denotes pattern
T1945 59-60 : denotes :
T1946 61-74 NNP denotes Predominately
T1947 75-76 NNP denotes B
T1948 76-77 : denotes -
T1949 78-81 CC denotes and
T1950 82-91 VBN denotes activated
T1951 92-105 NNS denotes T-lymphocytes
T1952 106-109 VBP denotes are
T1953 110-115 JJ denotes IRF-4
T1954 116-124 JJ denotes positive
T1955 125-126 -LRB- denotes (
T1956 126-127 CD denotes 7
T1957 128-130 CD denotes 11
T1958 130-131 -RRB- denotes )
T1959 131-132 . denotes .
T1960 133-135 IN denotes In
T1961 136-144 NN denotes contrast
T1962 145-147 TO denotes to
T1963 148-153 JJ denotes other
T1964 154-158 NNS denotes IRFs
T1965 158-159 , denotes ,
T1966 160-170 NN denotes expression
T1967 171-173 IN denotes of
T1968 174-179 NN denotes IRF-4
T1969 180-183 MD denotes can
T1970 183-186 RB denotes not
T1971 187-189 VB denotes be
T1972 190-197 VBN denotes induced
T1973 198-200 IN denotes by
T1974 201-205 NNS denotes IFNs
T1975 205-206 , denotes ,
T1976 207-210 CC denotes but
T1977 211-213 IN denotes by
T1978 214-221 NN denotes antigen
T1979 222-233 NN denotes stimulation
T1980 233-234 , denotes ,
T1981 235-247 NN denotes crosslinking
T1982 248-250 IN denotes of
T1983 251-252 SYM denotes T
T1984 252-253 : denotes -
T1985 254-256 CC denotes or
T1986 257-263 NNP denotes B-cell
T1987 264-273 NNS denotes receptors
T1988 274-276 CC denotes or
T1989 277-302 NN denotes phorbol-myristate-acetate
T1990 303-304 -LRB- denotes (
T1991 304-309 CD denotes 10,11
T1992 309-310 -RRB- denotes )
T1993 310-311 . denotes .
T1994 312-322 JJ denotes Consistent
T1995 323-327 IN denotes with
T1996 328-331 DT denotes the
T1997 332-343 NN denotes restriction
T1998 344-346 IN denotes of
T1999 347-357 NN denotes expression
T2000 358-360 TO denotes to
T2001 361-376 JJ denotes immunocompetent
R1541 T1955 T1957 punct (,11
R1543 T1956 T1957 nummod 7,11
R1544 T1957 T1958 nmod 11,)
R1546 T1958 T1952 punct ),are
R1547 T1959 T1937 punct .,is
R1548 T1960 T1972 prep In,induced
R1550 T1961 T1960 pobj contrast,In
R1551 T1962 T1961 prep to,contrast
R1553 T1963 T1964 amod other,IRFs
R1554 T1964 T1962 pobj IRFs,to
R1555 T1965 T1964 punct ",",IRFs
R1556 T1966 T1972 nsubjpass expression,induced
R1557 T1967 T1966 prep of,expression
R1558 T1968 T1967 pobj IRF-4,of
R1560 T1969 T1972 aux can,induced
R1562 T1970 T1972 neg not,induced
R1564 T1971 T1972 auxpass be,induced
R1565 T1972 T1972 ROOT induced,induced
R1566 T1973 T1972 agent by,induced
R1568 T1974 T1973 pobj IFNs,by
R1569 T1975 T1972 punct ",",induced
R1570 T1976 T1972 cc but,induced
R1572 T1977 T1972 conj by,induced
R1573 T1978 T1979 compound antigen,stimulation
R1575 T1979 T1977 pobj stimulation,by
R1576 T1980 T1972 punct ",",induced
R1578 T1981 T1972 conj crosslinking,induced
R1579 T1982 T1981 prep of,crosslinking
R1580 T1983 T1982 punct T,of
R1583 T1984 T1983 punct -,T
R1584 T1985 T1981 cc or,crosslinking
R1585 T1986 T1987 compound B-cell,receptors
R1586 T1987 T1981 conj receptors,crosslinking
R1587 T1988 T1987 cc or,receptors
R1588 T1989 T1987 conj phorbol-myristate-acetate,receptors
R1590 T1990 T1991 punct (,"10,11"
R1591 T1991 T1989 appos "10,11",phorbol-myristate-acetate
R1592 T1992 T1989 punct ),phorbol-myristate-acetate
R1594 T1993 T1981 punct .,crosslinking
R1597 T1995 T1994 prep with,Consistent
R1598 T1996 T1997 det the,restriction
R1599 T1997 T1995 pobj restriction,with
R1600 T1998 T1997 prep of,restriction
R1602 T1999 T1998 pobj expression,of
R1603 T2000 T1999 prep to,expression
R1616 T1937 T1937 ROOT is,is
R1619 T1938 T1939 nummod one,member
R1623 T1939 T1937 attr member,is
R1626 T1940 T1939 prep with,member
R1627 T1941 T1942 advmod very,restricted
R1629 T1942 T1944 amod restricted,pattern
R1630 T1943 T1944 compound expression,pattern
R1632 T1944 T1940 pobj pattern,with
R1633 T1945 T1937 punct :,is
R1635 T1946 T1947 compound Predominately,B
R1637 T1947 T1952 nsubj B,are
R1640 T1948 T1947 punct -,B
R1643 T1949 T1947 cc and,B
R1647 T1950 T1951 amod activated,T-lymphocytes
R1651 T1951 T1947 conj T-lymphocytes,B
R1653 T1952 T1952 ROOT are,are
R1659 T1953 T1954 amod IRF-4,positive
R1663 T1954 T1952 acomp positive,are

GO-BP

Id Subject Object Predicate Lexical cue
T1086 82-105 http://purl.obolibrary.org/obo/GO_0050798 denotes activated T-lymphocytes
T1087 82-105 http://purl.obolibrary.org/obo/GO_0051132 denotes activated T-lymphocytes
T1088 82-105 http://purl.obolibrary.org/obo/GO_0042110 denotes activated T-lymphocytes
T1089 82-105 http://purl.obolibrary.org/obo/GO_0050863 denotes activated T-lymphocytes
T1090 257-273 http://purl.obolibrary.org/obo/GO_0002452 denotes B-cell receptors

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T2595 110-115 Protein denotes IRF-4
T2596 41-51 Gene_expression denotes expression
T2597 41-51 Gene_expression denotes expression
T2598 41-51 Gene_expression denotes expression
T2599 41-51 Gene_expression denotes expression
T2600 41-51 Gene_expression denotes expression
T2601 116-124 Gene_expression denotes positive
T2602 154-158 Protein denotes IRFs
T2603 174-179 Protein denotes IRF-4
T2604 201-205 Protein denotes IFNs
T2605 160-170 Gene_expression denotes expression
T2606 190-197 Positive_regulation denotes induced
R2063 T2595 T2601 themeOf IRF-4,positive
R2065 T2603 T2605 themeOf IRF-4,expression
R2069 T2604 T2606 causeOf IFNs,induced
R2070 T2605 T2606 themeOf expression,induced

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue Negation
T1021 41-51 Gene_expression denotes expression
T1022 110-115 Protein denotes IRF-4
T1023 116-124 Gene_expression denotes positive
T1024 160-170 Gene_expression denotes expression
T1025 174-179 Protein denotes IRF-4
T1026 190-197 Positive_regulation denotes induced true
R759 T1022 T1023 themeOf IRF-4,positive
R760 T1024 T1026 themeOf expression,induced
R761 T1025 T1024 themeOf IRF-4,expression

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T1695 110-115 Q15306 denotes IRF-4
T1696 174-179 Q15306 denotes IRF-4

test2

Id Subject Object Predicate Lexical cue Negation
T969 41-51 Gene_expression denotes expression
T970 110-115 Protein denotes IRF-4 true
T971 116-124 Gene_expression denotes positive
T972 160-170 Gene_expression denotes expression
T973 174-179 Protein denotes IRF-4
T974 190-197 Positive_regulation denotes induced
R732 T970 T971 themeOf IRF-4,positive
R733 T972 T974 themeOf expression,induced
R734 T973 T972 themeOf IRF-4,expression