PMC:1310901 / 285-416 JSONTXT

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    bionlp-st-ge-2016-reference-eval

    {"project":"bionlp-st-ge-2016-reference-eval","denotations":[{"id":"T873","span":{"begin":31,"end":43},"obj":"Regulation"},{"id":"T874","span":{"begin":93,"end":123},"obj":"Protein"},{"id":"T875","span":{"begin":125,"end":130},"obj":"Protein"}],"relations":[{"id":"R632","pred":"themeOf","subj":"T874","obj":"T873"},{"id":"R633","pred":"equivalentTo","subj":"T875","obj":"T874"}],"text":" is mounting evidence that the deregulation of other genes, such as the transcription factor interferon regulatory factor 4 (IRF-4)"}

    events-check-again

    {"project":"events-check-again","denotations":[{"id":"T811","span":{"begin":125,"end":130},"obj":"Protein"},{"id":"T809","span":{"begin":31,"end":43},"obj":"Regulation"},{"id":"T810","span":{"begin":93,"end":123},"obj":"Protein"}],"relations":[{"id":"R600","pred":"equivalentTo","subj":"T811","obj":"T810"},{"id":"R694","pred":"themeOf","subj":"T810","obj":"T809"}],"attributes":[{"id":"M35","pred":"Negation","subj":"T809","obj":"true"}],"text":" is mounting evidence that the deregulation of other genes, such as the transcription factor interferon regulatory factor 4 (IRF-4)"}

    pmc-enju-pas

    {"project":"pmc-enju-pas","denotations":[{"id":"T172","span":{"begin":1,"end":3},"obj":"VB"},{"id":"T173","span":{"begin":4,"end":12},"obj":"VB"},{"id":"T174","span":{"begin":13,"end":21},"obj":"NN"},{"id":"T175","span":{"begin":22,"end":26},"obj":"IN"},{"id":"T176","span":{"begin":27,"end":30},"obj":"DT"},{"id":"T177","span":{"begin":31,"end":43},"obj":"NN"},{"id":"T178","span":{"begin":44,"end":46},"obj":"IN"},{"id":"T179","span":{"begin":47,"end":52},"obj":"JJ"},{"id":"T180","span":{"begin":53,"end":58},"obj":"NN"},{"id":"T181","span":{"begin":58,"end":59},"obj":"-COMMA-"},{"id":"T182","span":{"begin":60,"end":64},"obj":"JJ"},{"id":"T183","span":{"begin":65,"end":67},"obj":"IN"},{"id":"T184","span":{"begin":68,"end":71},"obj":"DT"},{"id":"T185","span":{"begin":72,"end":85},"obj":"NN"},{"id":"T186","span":{"begin":86,"end":92},"obj":"NN"},{"id":"T187","span":{"begin":93,"end":103},"obj":"NN"},{"id":"T188","span":{"begin":104,"end":114},"obj":"JJ"},{"id":"T189","span":{"begin":115,"end":121},"obj":"NN"},{"id":"T190","span":{"begin":122,"end":123},"obj":"CD"},{"id":"T191","span":{"begin":124,"end":125},"obj":"-LRB-"},{"id":"T192","span":{"begin":125,"end":130},"obj":"NN"},{"id":"T193","span":{"begin":130,"end":131},"obj":"-RRB-"}],"relations":[{"id":"R86","pred":"arg2Of","subj":"T174","obj":"T172"},{"id":"R87","pred":"arg1Of","subj":"T174","obj":"T173"},{"id":"R88","pred":"arg1Of","subj":"T177","obj":"T176"},{"id":"R89","pred":"arg1Of","subj":"T177","obj":"T178"},{"id":"R92","pred":"arg2Of","subj":"T180","obj":"T178"},{"id":"R93","pred":"arg1Of","subj":"T180","obj":"T179"},{"id":"R94","pred":"arg1Of","subj":"T180","obj":"T181"},{"id":"R95","pred":"arg1Of","subj":"T180","obj":"T183"},{"id":"R96","pred":"arg1Of","subj":"T183","obj":"T182"},{"id":"R97","pred":"arg2Of","subj":"T189","obj":"T183"},{"id":"R98","pred":"arg1Of","subj":"T189","obj":"T184"},{"id":"R99","pred":"arg1Of","subj":"T189","obj":"T185"},{"id":"R100","pred":"arg1Of","subj":"T189","obj":"T186"},{"id":"R101","pred":"arg1Of","subj":"T189","obj":"T187"},{"id":"R102","pred":"arg1Of","subj":"T189","obj":"T188"},{"id":"R103","pred":"arg1Of","subj":"T189","obj":"T190"},{"id":"R104","pred":"arg1Of","subj":"T189","obj":"T191"},{"id":"R105","pred":"arg2Of","subj":"T192","obj":"T191"},{"id":"R106","pred":"arg3Of","subj":"T193","obj":"T191"}],"namespaces":[{"prefix":"_base","uri":"http://kmcs.nii.ac.jp/enju/"}],"text":" is mounting evidence that the deregulation of other genes, such as the transcription factor interferon regulatory factor 4 (IRF-4)"}

    bionlp-st-ge-2016-coref

    {"project":"bionlp-st-ge-2016-coref","denotations":[{"id":"T386","span":{"begin":47,"end":58},"obj":"Anaphor"},{"id":"T387","span":{"begin":93,"end":123},"obj":"Antecedent"}],"relations":[{"id":"R662","pred":"boundBy","subj":"T386","obj":"T387"}],"namespaces":[{"prefix":"_base","uri":"https://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":" is mounting evidence that the deregulation of other genes, such as the transcription factor interferon regulatory factor 4 (IRF-4)"}

    bionlp-st-ge-2016-spacy-parsed

    {"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T463","span":{"begin":1,"end":3},"obj":"VBZ"},{"id":"T464","span":{"begin":4,"end":12},"obj":"VBG"},{"id":"T465","span":{"begin":13,"end":21},"obj":"NN"},{"id":"T466","span":{"begin":22,"end":26},"obj":"IN"},{"id":"T467","span":{"begin":27,"end":30},"obj":"DT"},{"id":"T468","span":{"begin":31,"end":43},"obj":"NN"},{"id":"T469","span":{"begin":44,"end":46},"obj":"IN"},{"id":"T470","span":{"begin":47,"end":52},"obj":"JJ"},{"id":"T471","span":{"begin":53,"end":58},"obj":"NNS"},{"id":"T472","span":{"begin":58,"end":59},"obj":","},{"id":"T473","span":{"begin":60,"end":64},"obj":"JJ"},{"id":"T474","span":{"begin":65,"end":67},"obj":"IN"},{"id":"T475","span":{"begin":68,"end":71},"obj":"DT"},{"id":"T476","span":{"begin":72,"end":85},"obj":"NN"},{"id":"T477","span":{"begin":86,"end":92},"obj":"NN"},{"id":"T478","span":{"begin":93,"end":103},"obj":"NN"},{"id":"T479","span":{"begin":104,"end":114},"obj":"JJ"},{"id":"T480","span":{"begin":115,"end":121},"obj":"NN"},{"id":"T481","span":{"begin":122,"end":123},"obj":"CD"},{"id":"T482","span":{"begin":124,"end":125},"obj":"-LRB-"},{"id":"T483","span":{"begin":125,"end":130},"obj":"NN"},{"id":"T484","span":{"begin":130,"end":131},"obj":"-RRB-"}],"relations":[{"id":"R352","pred":"ROOT","subj":"T463","obj":"T463"},{"id":"R353","pred":"amod","subj":"T464","obj":"T465"},{"id":"R354","pred":"attr","subj":"T465","obj":"T463"},{"id":"R356","pred":"det","subj":"T467","obj":"T468"},{"id":"R358","pred":"prep","subj":"T469","obj":"T468"},{"id":"R359","pred":"amod","subj":"T470","obj":"T471"},{"id":"R360","pred":"pobj","subj":"T471","obj":"T469"},{"id":"R361","pred":"punct","subj":"T472","obj":"T471"},{"id":"R362","pred":"amod","subj":"T473","obj":"T474"},{"id":"R363","pred":"prep","subj":"T474","obj":"T471"},{"id":"R364","pred":"det","subj":"T475","obj":"T480"},{"id":"R365","pred":"compound","subj":"T476","obj":"T477"},{"id":"R366","pred":"nmod","subj":"T477","obj":"T480"},{"id":"R367","pred":"nmod","subj":"T478","obj":"T480"},{"id":"R368","pred":"amod","subj":"T479","obj":"T480"},{"id":"R369","pred":"pobj","subj":"T480","obj":"T474"},{"id":"R370","pred":"nummod","subj":"T481","obj":"T480"},{"id":"R371","pred":"punct","subj":"T482","obj":"T480"},{"id":"R372","pred":"appos","subj":"T483","obj":"T480"},{"id":"R373","pred":"punct","subj":"T484","obj":"T480"}],"text":" is mounting evidence that the deregulation of other genes, such as the transcription factor interferon regulatory factor 4 (IRF-4)"}

    GO-BP

    {"project":"GO-BP","denotations":[{"id":"T119","span":{"begin":72,"end":85},"obj":"http://purl.obolibrary.org/obo/GO_0006351"}],"text":" is mounting evidence that the deregulation of other genes, such as the transcription factor interferon regulatory factor 4 (IRF-4)"}

    bionlp-st-ge-2016-reference-tees

    {"project":"bionlp-st-ge-2016-reference-tees","denotations":[{"id":"T843","span":{"begin":93,"end":123},"obj":"Protein"},{"id":"T844","span":{"begin":125,"end":130},"obj":"Protein"},{"id":"T845","span":{"begin":31,"end":43},"obj":"Regulation"},{"id":"T846","span":{"begin":31,"end":43},"obj":"Regulation"}],"relations":[{"id":"R617","pred":"themeOf","subj":"T843","obj":"T845"},{"id":"R618","pred":"themeOf","subj":"T844","obj":"T846"}],"text":" is mounting evidence that the deregulation of other genes, such as the transcription factor interferon regulatory factor 4 (IRF-4)"}

    bionlp-st-ge-2016-reference

    {"project":"bionlp-st-ge-2016-reference","denotations":[{"id":"T76","span":{"begin":31,"end":43},"obj":"Regulation"},{"id":"T77","span":{"begin":93,"end":123},"obj":"Protein"},{"id":"T78","span":{"begin":125,"end":130},"obj":"Protein"}],"relations":[{"id":"R650","pred":"themeOf","subj":"T77","obj":"T76"},{"id":"R651","pred":"equivalentTo","subj":"T78","obj":"T77"}],"attributes":[{"id":"M24","pred":"Negation","subj":"T76","obj":"true"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":" is mounting evidence that the deregulation of other genes, such as the transcription factor interferon regulatory factor 4 (IRF-4)"}

    bionlp-st-ge-2016-uniprot

    {"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T395","span":{"begin":93,"end":123},"obj":"Q92985"},{"id":"T396","span":{"begin":93,"end":123},"obj":"Q13568"},{"id":"T397","span":{"begin":93,"end":123},"obj":"Q14653"},{"id":"T398","span":{"begin":93,"end":123},"obj":"Q15306"},{"id":"T399","span":{"begin":93,"end":123},"obj":"Q02556"},{"id":"T400","span":{"begin":125,"end":130},"obj":"Q15306"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":" is mounting evidence that the deregulation of other genes, such as the transcription factor interferon regulatory factor 4 (IRF-4)"}

    test2

    {"project":"test2","denotations":[{"id":"T41","span":{"begin":93,"end":123},"obj":"Protein"},{"id":"T42","span":{"begin":125,"end":130},"obj":"Protein"}],"relations":[{"id":"R22","pred":"equivalentTo","subj":"T42","obj":"T41"}],"text":" is mounting evidence that the deregulation of other genes, such as the transcription factor interferon regulatory factor 4 (IRF-4)"}