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PMC:1310901 / 25940-26117 JSONTXT

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bionlp-st-ge-2016-reference-eval

Id Subject Object Predicate Lexical cue
T14480 23-33 Gene_expression denotes expression
T14481 145-149 Negative_regulation denotes loss
T14482 159-169 Gene_expression denotes expression
T14538 17-22 Protein denotes IRF-4
T14539 153-158 Protein denotes IRF-4
R11929 T14482 T14481 themeOf expression,loss
R11973 T14538 T14480 themeOf IRF-4,expression
R11976 T14539 T14482 themeOf IRF-4,expression

events-check-again

Id Subject Object Predicate Lexical cue
T14258 17-22 Protein denotes IRF-4
T14259 23-33 Gene_expression denotes expression
T14260 145-149 Negative_regulation denotes loss
T14261 153-158 Protein denotes IRF-4
T14262 159-169 Gene_expression denotes expression
R11836 T14258 T14259 themeOf IRF-4,expression
R11837 T14261 T14262 themeOf IRF-4,expression
R11838 T14262 T14260 themeOf expression,loss

sentences

Id Subject Object Predicate Lexical cue
T11302 0-177 Sentence denotes The finding that IRF-4 expression is silenced by promoter hypermethylation might represent a mechanism that accounts for the previously observed loss of IRF-4 expression in CML.
T178 0-177 Sentence denotes The finding that IRF-4 expression is silenced by promoter hypermethylation might represent a mechanism that accounts for the previously observed loss of IRF-4 expression in CML.

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T12060 0-3 DT denotes The
T12061 4-11 NN denotes finding
T12062 12-16 IN denotes that
T12063 17-22 NN denotes IRF-4
T12064 23-33 NN denotes expression
T12065 34-36 VB denotes is
T12066 37-45 VB denotes silenced
T12067 46-48 IN denotes by
T12068 49-57 NN denotes promoter
T12069 58-74 NN denotes hypermethylation
T12070 75-80 MD denotes might
T12071 81-90 VB denotes represent
T12072 91-92 DT denotes a
T12073 93-102 NN denotes mechanism
T12074 103-107 WDT denotes that
T12075 108-116 VB denotes accounts
T12076 117-120 IN denotes for
T12077 121-124 DT denotes the
T12078 125-135 RB denotes previously
T12079 136-144 VB denotes observed
T12080 145-149 NN denotes loss
T12081 150-152 IN denotes of
T12082 153-158 NN denotes IRF-4
T12083 159-169 NN denotes expression
T12084 170-172 IN denotes in
T12085 173-176 NN denotes CML
R9962 T12061 T12060 arg1Of finding,The
R9963 T12061 T12070 arg1Of finding,might
R9964 T12061 T12071 arg1Of finding,represent
R9965 T12064 T12063 arg1Of expression,IRF-4
R9966 T12064 T12065 arg1Of expression,is
R9967 T12064 T12066 arg2Of expression,silenced
R9968 T12066 T12061 arg2Of silenced,finding
R9969 T12066 T12062 arg1Of silenced,that
R9970 T12066 T12065 arg2Of silenced,is
R9971 T12069 T12066 arg1Of hypermethylation,silenced
R9972 T12069 T12067 arg2Of hypermethylation,by
R9973 T12069 T12068 arg1Of hypermethylation,promoter
R9974 T12071 T12070 arg2Of represent,might
R9975 T12073 T12071 arg2Of mechanism,represent
R9976 T12073 T12072 arg1Of mechanism,a
R9977 T12073 T12074 arg1Of mechanism,that
R9978 T12073 T12075 arg1Of mechanism,accounts
R9979 T12075 T12076 arg1Of accounts,for
R9980 T12079 T12078 arg1Of observed,previously
R9981 T12080 T12076 arg2Of loss,for
R9982 T12080 T12077 arg1Of loss,the
R9983 T12080 T12079 arg1Of loss,observed
R9984 T12080 T12081 arg1Of loss,of
R9985 T12083 T12081 arg2Of expression,of
R9986 T12083 T12082 arg1Of expression,IRF-4
R9987 T12083 T12084 arg1Of expression,in
R9988 T12085 T12084 arg2Of CML,in

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T13282 0-3 DT denotes The
T13283 4-11 NN denotes finding
T13284 12-16 WDT denotes that
T13285 17-22 NNP denotes IRF-4
T13286 23-33 NN denotes expression
T13287 34-36 VBZ denotes is
T13288 37-45 VBN denotes silenced
T13289 46-48 IN denotes by
T13290 49-57 NN denotes promoter
T13291 58-74 NN denotes hypermethylation
T13292 75-80 MD denotes might
T13293 81-90 VB denotes represent
T13294 91-92 DT denotes a
T13295 93-102 NN denotes mechanism
T13296 103-107 WDT denotes that
T13297 108-116 VBZ denotes accounts
T13298 117-120 IN denotes for
T13299 121-124 DT denotes the
T13300 125-135 RB denotes previously
T13301 136-144 JJ denotes observed
T13302 145-149 NN denotes loss
T13303 150-152 IN denotes of
T13304 153-158 NN denotes IRF-4
T13305 159-169 NN denotes expression
T13306 170-172 IN denotes in
T13307 173-176 NNP denotes CML
T13308 176-177 . denotes .
R11104 T13282 T13283 det The,finding
R11105 T13296 T13297 nsubj that,accounts
R11106 T13283 T13293 nsubj finding,represent
R11107 T13284 T13288 mark that,silenced
R11108 T13297 T13295 relcl accounts,mechanism
R11109 T13285 T13286 compound IRF-4,expression
R11110 T13286 T13288 nsubjpass expression,silenced
R11111 T13287 T13288 auxpass is,silenced
R11112 T13298 T13297 prep for,accounts
R11113 T13288 T13283 acl silenced,finding
R11114 T13289 T13288 agent by,silenced
R11115 T13290 T13291 compound promoter,hypermethylation
R11116 T13291 T13289 pobj hypermethylation,by
R11117 T13292 T13293 aux might,represent
R11118 T13293 T13293 ROOT represent,represent
R11119 T13294 T13295 det a,mechanism
R11120 T13299 T13302 det the,loss
R11121 T13295 T13293 dobj mechanism,represent
R11122 T13300 T13301 advmod previously,observed
R11123 T13301 T13302 amod observed,loss
R11124 T13302 T13298 pobj loss,for
R11125 T13303 T13302 prep of,loss
R11126 T13304 T13305 compound IRF-4,expression
R11127 T13305 T13303 pobj expression,of
R11128 T13306 T13302 prep in,loss
R11129 T13307 T13306 pobj CML,in
R11132 T13308 T13293 punct .,represent

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T14384 17-22 Protein denotes IRF-4
T14385 153-158 Protein denotes IRF-4
T14386 23-33 Gene_expression denotes expression
T14387 159-169 Gene_expression denotes expression
T14388 145-149 Negative_regulation denotes loss
R11885 T14384 T14386 themeOf IRF-4,expression
R11889 T14385 T14387 themeOf IRF-4,expression
R11892 T14387 T14388 themeOf expression,loss

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T11224 17-22 Protein denotes IRF-4
T11225 23-33 Gene_expression denotes expression
T11226 145-149 Negative_regulation denotes loss
T11227 153-158 Protein denotes IRF-4
T11228 159-169 Gene_expression denotes expression
R9197 T11224 T11225 themeOf IRF-4,expression
R9198 T11227 T11228 themeOf IRF-4,expression
R9199 T11228 T11226 themeOf expression,loss

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T12485 17-22 Q15306 denotes IRF-4
T12486 153-158 Q15306 denotes IRF-4

test2

Id Subject Object Predicate Lexical cue
T11086 17-22 Protein denotes IRF-4
T11087 23-33 Gene_expression denotes expression
T11088 37-45 Negative_regulation denotes silenced
T11089 145-149 Negative_regulation denotes loss
T11090 153-158 Protein denotes IRF-4
T11091 159-169 Gene_expression denotes expression
R9115 T11086 T11087 themeOf IRF-4,expression
R9116 T11087 T11088 themeOf expression,silenced
R9117 T11090 T11091 themeOf IRF-4,expression
R9118 T11091 T11089 themeOf expression,loss