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PMC:1310901 / 2454-2593 JSONTXT

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bionlp-st-ge-2016-reference-eval

Id Subject Object Predicate Lexical cue
T2663 1-11 Gene_expression denotes expression
T2694 19-49 Protein denotes interferon regulatory factor 4
T2695 51-56 Protein denotes IRF-4
T2696 100-105 Protein denotes IFN-α
R2113 T2694 T2663 themeOf interferon regulatory factor 4,expression
R2115 T2695 T2694 equivalentTo IRF-4,interferon regulatory factor 4

events-check-again

Id Subject Object Predicate Lexical cue
T2521 1-11 Gene_expression denotes expression
T2522 19-49 Protein denotes interferon regulatory factor 4
T2523 51-56 Protein denotes IRF-4
T2524 100-105 Protein denotes IFN-α
R2029 T2522 T2521 themeOf interferon regulatory factor 4,expression
R2030 T2523 T2522 equivalentTo IRF-4,interferon regulatory factor 4

2_test

Id Subject Object Predicate Lexical cue
16396836-11013272-76538166 117-118 11013272 denotes 3

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1218 1-11 NN denotes expression
T1219 12-14 IN denotes of
T1220 15-18 DT denotes the
T1221 19-29 NN denotes interferon
T1222 30-40 JJ denotes regulatory
T1223 41-47 NN denotes factor
T1224 48-49 CD denotes 4
T1225 50-51 -LRB- denotes (
T1226 51-56 NN denotes IRF-4
T1227 56-57 -RRB- denotes )
T1228 58-60 IN denotes in
T1229 61-64 NN denotes CML
T1230 64-65 -COMMA- denotes ,
T1231 66-77 VB denotes correlating
T1232 78-82 IN denotes with
T1233 83-87 JJ denotes poor
T1234 88-96 NN denotes response
T1235 97-99 TO denotes to
T1236 100-105 NN denotes IFN-α
T1237 106-115 NN denotes treatment
T1238 116-117 -LRB- denotes (
T1239 117-118 CD denotes 3
T1240 118-119 -RRB- denotes )
T1241 121-124 DT denotes The
T1242 125-130 NN denotes cause
T1243 131-133 IN denotes of
T1244 134-137 DT denotes the
R890 T1218 T1219 arg1Of expression,of
R891 T1223 T1219 arg2Of factor,of
R892 T1223 T1220 arg1Of factor,the
R893 T1223 T1221 arg1Of factor,interferon
R894 T1223 T1222 arg1Of factor,regulatory
R895 T1223 T1224 arg1Of factor,4
R896 T1223 T1225 arg1Of factor,(
R897 T1226 T1225 arg2Of IRF-4,(
R898 T1227 T1225 arg3Of ),(
R899 T1229 T1228 arg2Of CML,in
R900 T1231 T1232 arg1Of correlating,with
R901 T1234 T1232 arg2Of response,with
R902 T1234 T1233 arg1Of response,poor
R903 T1234 T1235 arg1Of response,to
R904 T1237 T1235 arg2Of treatment,to
R905 T1237 T1236 arg1Of treatment,IFN-α
R906 T1237 T1238 arg1Of treatment,(
R907 T1239 T1238 arg2Of 3,(
R908 T1240 T1238 arg3Of ),(
R909 T1242 T1241 arg1Of cause,The
R910 T1242 T1243 arg1Of cause,of

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T1843 1-11 NN denotes expression
T1844 12-14 IN denotes of
T1845 15-18 DT denotes the
T1846 19-29 NN denotes interferon
T1847 30-40 JJ denotes regulatory
T1848 41-47 NN denotes factor
T1849 48-49 CD denotes 4
T1850 50-51 -LRB- denotes (
T1851 51-56 NN denotes IRF-4
T1852 56-57 -RRB- denotes )
T1853 58-60 IN denotes in
T1854 61-64 NNP denotes CML
T1855 64-65 , denotes ,
T1856 66-77 VBG denotes correlating
T1857 78-82 IN denotes with
T1858 83-87 JJ denotes poor
T1859 88-96 NN denotes response
T1860 97-99 TO denotes to
T1861 100-105 JJ denotes IFN-α
T1862 106-115 NN denotes treatment
T1863 116-117 -LRB- denotes (
T1864 117-118 LS denotes 3
T1865 118-119 -RRB- denotes )
T1866 119-120 . denotes .
T1867 121-124 DT denotes The
T1868 125-130 NN denotes cause
T1869 131-133 IN denotes of
T1870 134-137 DT denotes the
R1467 T1844 T1843 prep of,expression
R1468 T1845 T1848 det the,factor
R1469 T1846 T1848 nmod interferon,factor
R1470 T1847 T1848 amod regulatory,factor
R1471 T1848 T1844 pobj factor,of
R1472 T1849 T1848 nummod 4,factor
R1473 T1850 T1848 punct (,factor
R1474 T1851 T1848 appos IRF-4,factor
R1475 T1852 T1848 punct ),factor
R1476 T1853 T1843 prep in,expression
R1477 T1854 T1853 pobj CML,in
R1480 T1857 T1856 prep with,correlating
R1481 T1858 T1859 amod poor,response
R1482 T1859 T1857 pobj response,with
R1483 T1860 T1859 prep to,response
R1484 T1861 T1862 amod IFN-α,treatment
R1485 T1862 T1860 pobj treatment,to
R1486 T1863 T1864 punct (,3
R1487 T1864 T1856 parataxis 3,correlating
R1488 T1865 T1864 punct ),3
R1490 T1867 T1868 det The,cause
R1492 T1869 T1868 prep of,cause

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T2573 19-49 Protein denotes interferon regulatory factor 4
T2574 51-56 Protein denotes IRF-4
T2575 100-105 Protein denotes IFN-α
T2576 1-11 Gene_expression denotes expression
T2577 1-11 Gene_expression denotes expression
R2059 T2573 T2576 themeOf interferon regulatory factor 4,expression
R2060 T2574 T2577 themeOf IRF-4,expression

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T1010 1-11 Gene_expression denotes expression
T1011 19-49 Protein denotes interferon regulatory factor 4
T1012 51-56 Protein denotes IRF-4
T1013 100-105 Protein denotes IFN-α
R751 T1011 T1010 themeOf interferon regulatory factor 4,expression
R752 T1012 T1011 equivalentTo IRF-4,interferon regulatory factor 4

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T1676 19-49 Q92985 denotes interferon regulatory factor 4
T1677 19-49 Q02556 denotes interferon regulatory factor 4
T1678 19-49 Q15306 denotes interferon regulatory factor 4
T1679 19-49 Q14653 denotes interferon regulatory factor 4
T1680 19-49 Q13568 denotes interferon regulatory factor 4
T1681 51-56 Q15306 denotes IRF-4
T1682 100-105 P01562 denotes IFN-α

test2

Id Subject Object Predicate Lexical cue Negation
T958 1-11 Gene_expression denotes expression
T959 19-49 Protein denotes interferon regulatory factor 4
T960 51-56 Protein denotes IRF-4 true
T961 100-105 Protein denotes IFN-α
R724 T959 T958 themeOf interferon regulatory factor 4,expression
R725 T960 T959 equivalentTo IRF-4,interferon regulatory factor 4