PMC:1310901 / 24501-24695 JSONTXT

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    bionlp-st-ge-2016-reference-eval

    {"project":"bionlp-st-ge-2016-reference-eval","denotations":[{"id":"T14465","span":{"begin":45,"end":59},"obj":"Regulation"},{"id":"T14466","span":{"begin":69,"end":78},"obj":"Positive_regulation"},{"id":"T14467","span":{"begin":88,"end":98},"obj":"Gene_expression"},{"id":"T14468","span":{"begin":99,"end":106},"obj":"Positive_regulation"},{"id":"T14469","span":{"begin":110,"end":117},"obj":"Binding"},{"id":"T14526","span":{"begin":63,"end":68},"obj":"Protein"},{"id":"T14527","span":{"begin":82,"end":87},"obj":"Protein"},{"id":"T14528","span":{"begin":140,"end":145},"obj":"Protein"},{"id":"T14529","span":{"begin":171,"end":176},"obj":"Protein"},{"id":"T14577","span":{"begin":23,"end":36},"obj":"Entity"}],"relations":[{"id":"R11918","pred":"themeOf","subj":"T14466","obj":"T14465"},{"id":"R11920","pred":"themeOf","subj":"T14467","obj":"T14468"},{"id":"R11921","pred":"causeOf","subj":"T14469","obj":"T14468"},{"id":"R11948","pred":"themeOf","subj":"T14526","obj":"T14466"},{"id":"R11949","pred":"themeOf","subj":"T14527","obj":"T14467"},{"id":"R11954","pred":"themeOf","subj":"T14528","obj":"T14469"},{"id":"R11998","pred":"causeOf","subj":"T14577","obj":"T14465"},{"id":"R11999","pred":"partOf","subj":"T14577","obj":"T14529"},{"id":"R12000","pred":"themeOf","subj":"T14577","obj":"T14469"}],"text":"It has been shown that NFκB elements play an important role in IRF-4 induction as IRF-4 expression depends on binding of the transactivator c-Rel to these elements in the IRF-4 promoter (31,37)."}

    events-check-again

    {"project":"events-check-again","denotations":[{"id":"T14229","span":{"begin":23,"end":36},"obj":"Entity"},{"id":"T14230","span":{"begin":45,"end":59},"obj":"Regulation"},{"id":"T14231","span":{"begin":63,"end":68},"obj":"Protein"},{"id":"T14232","span":{"begin":69,"end":78},"obj":"Positive_regulation"},{"id":"T14233","span":{"begin":82,"end":87},"obj":"Protein"},{"id":"T14234","span":{"begin":88,"end":98},"obj":"Gene_expression"},{"id":"T14235","span":{"begin":99,"end":106},"obj":"Positive_regulation"},{"id":"T14236","span":{"begin":110,"end":117},"obj":"Binding"},{"id":"T14237","span":{"begin":140,"end":145},"obj":"Protein"},{"id":"T14238","span":{"begin":171,"end":176},"obj":"Protein"}],"relations":[{"id":"R11808","pred":"causeOf","subj":"T14229","obj":"T14230"},{"id":"R11809","pred":"partOf","subj":"T14229","obj":"T14238"},{"id":"R11810","pred":"themeOf","subj":"T14229","obj":"T14236"},{"id":"R11811","pred":"themeOf","subj":"T14231","obj":"T14232"},{"id":"R11812","pred":"themeOf","subj":"T14232","obj":"T14230"},{"id":"R11813","pred":"themeOf","subj":"T14233","obj":"T14234"},{"id":"R11814","pred":"themeOf","subj":"T14234","obj":"T14235"},{"id":"R11816","pred":"causeOf","subj":"T14236","obj":"T14235"},{"id":"R11817","pred":"themeOf","subj":"T14237","obj":"T14236"}],"text":"It has been shown that NFκB elements play an important role in IRF-4 induction as IRF-4 expression depends on binding of the transactivator c-Rel to these elements in the IRF-4 promoter (31,37)."}

    sentences

    {"project":"sentences","denotations":[{"id":"T11294","span":{"begin":0,"end":194},"obj":"Sentence"},{"id":"T170","span":{"begin":0,"end":194},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"It has been shown that NFκB elements play an important role in IRF-4 induction as IRF-4 expression depends on binding of the transactivator c-Rel to these elements in the IRF-4 promoter (31,37)."}

    2_test

    {"project":"2_test","denotations":[{"id":"16396836-12218129-76538207","span":{"begin":187,"end":189},"obj":"12218129"},{"id":"16396836-10770796-76538208","span":{"begin":190,"end":192},"obj":"10770796"}],"text":"It has been shown that NFκB elements play an important role in IRF-4 induction as IRF-4 expression depends on binding of the transactivator c-Rel to these elements in the IRF-4 promoter (31,37)."}

    pmc-enju-pas

    {"project":"pmc-enju-pas","denotations":[{"id":"T11817","span":{"begin":0,"end":2},"obj":"PRP"},{"id":"T11818","span":{"begin":3,"end":6},"obj":"VB"},{"id":"T11819","span":{"begin":7,"end":11},"obj":"VB"},{"id":"T11820","span":{"begin":12,"end":17},"obj":"VB"},{"id":"T11821","span":{"begin":18,"end":22},"obj":"IN"},{"id":"T11822","span":{"begin":23,"end":27},"obj":"NN"},{"id":"T11823","span":{"begin":28,"end":36},"obj":"NN"},{"id":"T11824","span":{"begin":37,"end":41},"obj":"VB"},{"id":"T11825","span":{"begin":42,"end":44},"obj":"DT"},{"id":"T11826","span":{"begin":45,"end":54},"obj":"JJ"},{"id":"T11827","span":{"begin":55,"end":59},"obj":"NN"},{"id":"T11828","span":{"begin":60,"end":62},"obj":"IN"},{"id":"T11829","span":{"begin":63,"end":68},"obj":"NN"},{"id":"T11830","span":{"begin":69,"end":78},"obj":"NN"},{"id":"T11831","span":{"begin":79,"end":81},"obj":"IN"},{"id":"T11832","span":{"begin":82,"end":87},"obj":"NN"},{"id":"T11833","span":{"begin":88,"end":98},"obj":"NN"},{"id":"T11834","span":{"begin":99,"end":106},"obj":"VB"},{"id":"T11835","span":{"begin":107,"end":109},"obj":"IN"},{"id":"T11836","span":{"begin":110,"end":117},"obj":"NN"},{"id":"T11837","span":{"begin":118,"end":120},"obj":"IN"},{"id":"T11838","span":{"begin":121,"end":124},"obj":"DT"},{"id":"T11839","span":{"begin":125,"end":139},"obj":"NN"},{"id":"T11840","span":{"begin":140,"end":145},"obj":"NN"},{"id":"T11841","span":{"begin":146,"end":148},"obj":"TO"},{"id":"T11842","span":{"begin":149,"end":154},"obj":"DT"},{"id":"T11843","span":{"begin":155,"end":163},"obj":"NN"},{"id":"T11844","span":{"begin":164,"end":166},"obj":"IN"},{"id":"T11845","span":{"begin":167,"end":170},"obj":"DT"},{"id":"T11846","span":{"begin":171,"end":176},"obj":"NN"},{"id":"T11847","span":{"begin":177,"end":185},"obj":"NN"},{"id":"T11848","span":{"begin":186,"end":187},"obj":"-LRB-"},{"id":"T11849","span":{"begin":187,"end":192},"obj":"CD"},{"id":"T11850","span":{"begin":192,"end":193},"obj":"-RRB-"}],"relations":[{"id":"R9714","pred":"arg1Of","subj":"T11817","obj":"T11818"},{"id":"R9715","pred":"arg1Of","subj":"T11817","obj":"T11819"},{"id":"R9716","pred":"arg2Of","subj":"T11817","obj":"T11820"},{"id":"R9717","pred":"arg2Of","subj":"T11820","obj":"T11818"},{"id":"R9718","pred":"arg2Of","subj":"T11820","obj":"T11819"},{"id":"R9719","pred":"arg1Of","subj":"T11823","obj":"T11822"},{"id":"R9720","pred":"arg1Of","subj":"T11823","obj":"T11824"},{"id":"R9721","pred":"arg3Of","subj":"T11824","obj":"T11820"},{"id":"R9722","pred":"arg1Of","subj":"T11824","obj":"T11821"},{"id":"R9723","pred":"arg1Of","subj":"T11824","obj":"T11828"},{"id":"R9724","pred":"arg1Of","subj":"T11824","obj":"T11831"},{"id":"R9725","pred":"arg2Of","subj":"T11827","obj":"T11824"},{"id":"R9726","pred":"arg1Of","subj":"T11827","obj":"T11825"},{"id":"R9727","pred":"arg1Of","subj":"T11827","obj":"T11826"},{"id":"R9728","pred":"arg2Of","subj":"T11830","obj":"T11828"},{"id":"R9729","pred":"arg1Of","subj":"T11830","obj":"T11829"},{"id":"R9730","pred":"arg1Of","subj":"T11833","obj":"T11832"},{"id":"R9731","pred":"arg1Of","subj":"T11833","obj":"T11834"},{"id":"R9732","pred":"arg2Of","subj":"T11834","obj":"T11831"},{"id":"R9733","pred":"arg1Of","subj":"T11834","obj":"T11835"},{"id":"R9734","pred":"arg2Of","subj":"T11836","obj":"T11835"},{"id":"R9735","pred":"arg1Of","subj":"T11836","obj":"T11837"},{"id":"R9736","pred":"arg1Of","subj":"T11836","obj":"T11841"},{"id":"R9737","pred":"arg2Of","subj":"T11840","obj":"T11837"},{"id":"R9738","pred":"arg1Of","subj":"T11840","obj":"T11838"},{"id":"R9739","pred":"arg1Of","subj":"T11840","obj":"T11839"},{"id":"R9740","pred":"arg2Of","subj":"T11843","obj":"T11841"},{"id":"R9741","pred":"arg1Of","subj":"T11843","obj":"T11842"},{"id":"R9742","pred":"arg1Of","subj":"T11843","obj":"T11844"},{"id":"R9743","pred":"arg2Of","subj":"T11847","obj":"T11844"},{"id":"R9744","pred":"arg1Of","subj":"T11847","obj":"T11845"},{"id":"R9745","pred":"arg1Of","subj":"T11847","obj":"T11846"},{"id":"R9746","pred":"arg1Of","subj":"T11847","obj":"T11848"},{"id":"R9747","pred":"arg2Of","subj":"T11849","obj":"T11848"},{"id":"R9748","pred":"arg3Of","subj":"T11850","obj":"T11848"}],"namespaces":[{"prefix":"_base","uri":"http://kmcs.nii.ac.jp/enju/"}],"text":"It has been shown that NFκB elements play an important role in IRF-4 induction as IRF-4 expression depends on binding of the transactivator c-Rel to these elements in the IRF-4 promoter (31,37)."}

    bionlp-st-ge-2016-coref

    {"project":"bionlp-st-ge-2016-coref","denotations":[{"id":"T12442","span":{"begin":149,"end":163},"obj":"Anaphor"},{"id":"T12443","span":{"begin":23,"end":36},"obj":"Antecedent"}],"relations":[{"id":"R10351","pred":"boundBy","subj":"T12442","obj":"T12443"}],"namespaces":[{"prefix":"_base","uri":"https://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"It has been shown that NFκB elements play an important role in IRF-4 induction as IRF-4 expression depends on binding of the transactivator c-Rel to these elements in the IRF-4 promoter (31,37)."}

    bionlp-st-ge-2016-spacy-parsed

    {"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T13029","span":{"begin":0,"end":2},"obj":"PRP"},{"id":"T13030","span":{"begin":3,"end":6},"obj":"VBZ"},{"id":"T13031","span":{"begin":7,"end":11},"obj":"VBN"},{"id":"T13032","span":{"begin":12,"end":17},"obj":"VBN"},{"id":"T13033","span":{"begin":18,"end":22},"obj":"IN"},{"id":"T13034","span":{"begin":23,"end":27},"obj":"NNP"},{"id":"T13035","span":{"begin":28,"end":36},"obj":"NNS"},{"id":"T13036","span":{"begin":37,"end":41},"obj":"VBP"},{"id":"T13037","span":{"begin":42,"end":44},"obj":"DT"},{"id":"T13038","span":{"begin":45,"end":54},"obj":"JJ"},{"id":"T13039","span":{"begin":55,"end":59},"obj":"NN"},{"id":"T13040","span":{"begin":60,"end":62},"obj":"IN"},{"id":"T13041","span":{"begin":63,"end":68},"obj":"NN"},{"id":"T13042","span":{"begin":69,"end":78},"obj":"NN"},{"id":"T13043","span":{"begin":79,"end":81},"obj":"IN"},{"id":"T13044","span":{"begin":82,"end":87},"obj":"JJ"},{"id":"T13045","span":{"begin":88,"end":98},"obj":"NN"},{"id":"T13046","span":{"begin":99,"end":106},"obj":"VBZ"},{"id":"T13047","span":{"begin":107,"end":109},"obj":"IN"},{"id":"T13048","span":{"begin":110,"end":117},"obj":"JJ"},{"id":"T13049","span":{"begin":118,"end":120},"obj":"IN"},{"id":"T13050","span":{"begin":121,"end":124},"obj":"DT"},{"id":"T13051","span":{"begin":125,"end":139},"obj":"NN"},{"id":"T13052","span":{"begin":140,"end":145},"obj":"NN"},{"id":"T13053","span":{"begin":146,"end":148},"obj":"TO"},{"id":"T13054","span":{"begin":149,"end":154},"obj":"DT"},{"id":"T13055","span":{"begin":155,"end":163},"obj":"NNS"},{"id":"T13056","span":{"begin":164,"end":166},"obj":"IN"},{"id":"T13057","span":{"begin":167,"end":170},"obj":"DT"},{"id":"T13058","span":{"begin":171,"end":176},"obj":"NN"},{"id":"T13059","span":{"begin":177,"end":185},"obj":"NN"},{"id":"T13060","span":{"begin":186,"end":187},"obj":"-LRB-"},{"id":"T13061","span":{"begin":187,"end":192},"obj":"CD"},{"id":"T13062","span":{"begin":192,"end":193},"obj":"-RRB-"},{"id":"T13063","span":{"begin":193,"end":194},"obj":"."}],"relations":[{"id":"R10851","pred":"nsubjpass","subj":"T13029","obj":"T13032"},{"id":"R10852","pred":"aux","subj":"T13030","obj":"T13032"},{"id":"R10853","pred":"auxpass","subj":"T13031","obj":"T13032"},{"id":"R10854","pred":"ROOT","subj":"T13032","obj":"T13032"},{"id":"R10855","pred":"mark","subj":"T13033","obj":"T13036"},{"id":"R10856","pred":"compound","subj":"T13034","obj":"T13035"},{"id":"R10857","pred":"nsubj","subj":"T13035","obj":"T13036"},{"id":"R10858","pred":"ccomp","subj":"T13036","obj":"T13032"},{"id":"R10859","pred":"det","subj":"T13037","obj":"T13039"},{"id":"R10860","pred":"amod","subj":"T13038","obj":"T13039"},{"id":"R10861","pred":"dobj","subj":"T13039","obj":"T13036"},{"id":"R10862","pred":"prep","subj":"T13040","obj":"T13039"},{"id":"R10863","pred":"compound","subj":"T13041","obj":"T13042"},{"id":"R10864","pred":"pobj","subj":"T13042","obj":"T13040"},{"id":"R10865","pred":"mark","subj":"T13043","obj":"T13046"},{"id":"R10866","pred":"amod","subj":"T13044","obj":"T13045"},{"id":"R10867","pred":"nsubj","subj":"T13045","obj":"T13046"},{"id":"R10868","pred":"advcl","subj":"T13046","obj":"T13036"},{"id":"R10869","pred":"prep","subj":"T13047","obj":"T13046"},{"id":"R10870","pred":"pobj","subj":"T13048","obj":"T13047"},{"id":"R10871","pred":"prep","subj":"T13049","obj":"T13048"},{"id":"R10872","pred":"det","subj":"T13050","obj":"T13052"},{"id":"R10873","pred":"compound","subj":"T13051","obj":"T13052"},{"id":"R10874","pred":"pobj","subj":"T13052","obj":"T13049"},{"id":"R10875","pred":"prep","subj":"T13053","obj":"T13052"},{"id":"R10876","pred":"det","subj":"T13054","obj":"T13055"},{"id":"R10877","pred":"pobj","subj":"T13055","obj":"T13053"},{"id":"R10878","pred":"prep","subj":"T13056","obj":"T13055"},{"id":"R10879","pred":"det","subj":"T13057","obj":"T13059"},{"id":"R10880","pred":"compound","subj":"T13058","obj":"T13059"},{"id":"R10881","pred":"pobj","subj":"T13059","obj":"T13056"},{"id":"R10882","pred":"punct","subj":"T13060","obj":"T13059"},{"id":"R10883","pred":"appos","subj":"T13061","obj":"T13059"},{"id":"R10884","pred":"punct","subj":"T13062","obj":"T13059"},{"id":"R10885","pred":"punct","subj":"T13063","obj":"T13032"}],"text":"It has been shown that NFκB elements play an important role in IRF-4 induction as IRF-4 expression depends on binding of the transactivator c-Rel to these elements in the IRF-4 promoter (31,37)."}

    GO-MF

    {"project":"GO-MF","denotations":[{"id":"T13730","span":{"begin":110,"end":117},"obj":"http://purl.obolibrary.org/obo/GO_0005488"}],"text":"It has been shown that NFκB elements play an important role in IRF-4 induction as IRF-4 expression depends on binding of the transactivator c-Rel to these elements in the IRF-4 promoter (31,37)."}

    bionlp-st-ge-2016-reference-tees

    {"project":"bionlp-st-ge-2016-reference-tees","denotations":[{"id":"T14355","span":{"begin":23,"end":36},"obj":"Protein"},{"id":"T14356","span":{"begin":63,"end":68},"obj":"Protein"},{"id":"T14357","span":{"begin":82,"end":87},"obj":"Protein"},{"id":"T14358","span":{"begin":125,"end":145},"obj":"Protein"},{"id":"T14359","span":{"begin":171,"end":185},"obj":"Protein"},{"id":"T14360","span":{"begin":69,"end":78},"obj":"Positive_regulation"},{"id":"T14361","span":{"begin":88,"end":98},"obj":"Gene_expression"},{"id":"T14362","span":{"begin":110,"end":117},"obj":"Binding"},{"id":"T14363","span":{"begin":55,"end":59},"obj":"Regulation"},{"id":"T14364","span":{"begin":99,"end":106},"obj":"Positive_regulation"}],"relations":[{"id":"R11881","pred":"causeOf","subj":"T14355","obj":"T14363"},{"id":"R11882","pred":"themeOf","subj":"T14356","obj":"T14360"},{"id":"R11883","pred":"themeOf","subj":"T14357","obj":"T14361"},{"id":"R11884","pred":"themeOf","subj":"T14358","obj":"T14362"},{"id":"R11886","pred":"themeOf","subj":"T14360","obj":"T14363"},{"id":"R11887","pred":"themeOf","subj":"T14361","obj":"T14364"},{"id":"R11888","pred":"causeOf","subj":"T14362","obj":"T14364"}],"text":"It has been shown that NFκB elements play an important role in IRF-4 induction as IRF-4 expression depends on binding of the transactivator c-Rel to these elements in the IRF-4 promoter (31,37)."}

    bionlp-st-ge-2016-reference

    {"project":"bionlp-st-ge-2016-reference","denotations":[{"id":"T11195","span":{"begin":23,"end":36},"obj":"Entity"},{"id":"T11196","span":{"begin":45,"end":59},"obj":"Regulation"},{"id":"T11197","span":{"begin":63,"end":68},"obj":"Protein"},{"id":"T11198","span":{"begin":69,"end":78},"obj":"Positive_regulation"},{"id":"T11199","span":{"begin":82,"end":87},"obj":"Protein"},{"id":"T11200","span":{"begin":88,"end":98},"obj":"Gene_expression"},{"id":"T11201","span":{"begin":99,"end":106},"obj":"Positive_regulation"},{"id":"T11202","span":{"begin":110,"end":117},"obj":"Binding"},{"id":"T11203","span":{"begin":140,"end":145},"obj":"Protein"},{"id":"T11204","span":{"begin":171,"end":176},"obj":"Protein"}],"relations":[{"id":"R9175","pred":"causeOf","subj":"T11195","obj":"T11196"},{"id":"R9176","pred":"partOf","subj":"T11195","obj":"T11204"},{"id":"R9177","pred":"themeOf","subj":"T11195","obj":"T11202"},{"id":"R9178","pred":"themeOf","subj":"T11197","obj":"T11198"},{"id":"R9179","pred":"themeOf","subj":"T11198","obj":"T11196"},{"id":"R9180","pred":"themeOf","subj":"T11199","obj":"T11200"},{"id":"R9181","pred":"themeOf","subj":"T11200","obj":"T11201"},{"id":"R9182","pred":"causeOf","subj":"T11202","obj":"T11201"},{"id":"R9183","pred":"themeOf","subj":"T11203","obj":"T11202"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"It has been shown that NFκB elements play an important role in IRF-4 induction as IRF-4 expression depends on binding of the transactivator c-Rel to these elements in the IRF-4 promoter (31,37)."}

    bionlp-st-ge-2016-uniprot

    {"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T12468","span":{"begin":63,"end":68},"obj":"Q15306"},{"id":"T12469","span":{"begin":82,"end":87},"obj":"Q15306"},{"id":"T12470","span":{"begin":140,"end":145},"obj":"Q04864"},{"id":"T12471","span":{"begin":142,"end":145},"obj":"Q04864"},{"id":"T12472","span":{"begin":171,"end":176},"obj":"Q15306"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"It has been shown that NFκB elements play an important role in IRF-4 induction as IRF-4 expression depends on binding of the transactivator c-Rel to these elements in the IRF-4 promoter (31,37)."}

    test2

    {"project":"test2","denotations":[{"id":"T11063","span":{"begin":55,"end":59},"obj":"Regulation"},{"id":"T11064","span":{"begin":63,"end":68},"obj":"Protein"},{"id":"T11065","span":{"begin":69,"end":78},"obj":"Positive_regulation"},{"id":"T11066","span":{"begin":82,"end":87},"obj":"Protein"},{"id":"T11067","span":{"begin":88,"end":98},"obj":"Gene_expression"},{"id":"T11068","span":{"begin":110,"end":117},"obj":"Binding"},{"id":"T11069","span":{"begin":140,"end":145},"obj":"Protein"},{"id":"T11070","span":{"begin":171,"end":176},"obj":"Protein"}],"relations":[{"id":"R9105","pred":"themeOf","subj":"T11064","obj":"T11065"},{"id":"R9106","pred":"themeOf","subj":"T11065","obj":"T11063"},{"id":"R9107","pred":"themeOf","subj":"T11066","obj":"T11067"},{"id":"R9108","pred":"themeOf","subj":"T11069","obj":"T11068"}],"attributes":[{"id":"M262","pred":"Negation","subj":"T11065","obj":"true"},{"id":"M263","pred":"Negation","subj":"T11066","obj":"true"},{"id":"M261","pred":"Negation","subj":"T11064","obj":"true"}],"text":"It has been shown that NFκB elements play an important role in IRF-4 induction as IRF-4 expression depends on binding of the transactivator c-Rel to these elements in the IRF-4 promoter (31,37)."}