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PMC:1310901 / 2378-2668 JSONTXT

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bionlp-st-ge-2016-reference-eval

Id Subject Object Predicate Lexical cue
T2662 68-76 Negative_regulation denotes impaired
T2663 77-87 Gene_expression denotes expression
T2664 214-223 Negative_regulation denotes silencing
T2694 95-125 Protein denotes interferon regulatory factor 4
T2695 127-132 Protein denotes IRF-4
T2696 176-181 Protein denotes IFN-α
T2697 227-232 Protein denotes IRF-4
T2700 257-286 Protein denotes Interferon regulatory factors
R2081 T2663 T2662 themeOf expression,impaired
R2113 T2694 T2663 themeOf interferon regulatory factor 4,expression
R2115 T2695 T2694 equivalentTo IRF-4,interferon regulatory factor 4
R2117 T2697 T2664 themeOf IRF-4,silencing

events-check-again

Id Subject Object Predicate Lexical cue
T2520 68-76 Negative_regulation denotes impaired
T2521 77-87 Gene_expression denotes expression
T2522 95-125 Protein denotes interferon regulatory factor 4
T2523 127-132 Protein denotes IRF-4
T2524 176-181 Protein denotes IFN-α
T2525 214-223 Negative_regulation denotes silencing
T2526 227-232 Protein denotes IRF-4
R2026 T2521 T2520 themeOf expression,impaired
R2029 T2522 T2521 themeOf interferon regulatory factor 4,expression
R2030 T2523 T2522 equivalentTo IRF-4,interferon regulatory factor 4
R2031 T2526 T2525 themeOf IRF-4,silencing

sentences

Id Subject Object Predicate Lexical cue
T1057 42-196 Sentence denotes Recently, we described an impaired expression of the interferon regulatory factor 4 (IRF-4) in CML, correlating with poor response to IFN-α treatment (3).
T1058 197-256 Sentence denotes The cause of the silencing of IRF-4 level remained unclear.
T15 42-196 Sentence denotes Recently, we described an impaired expression of the interferon regulatory factor 4 (IRF-4) in CML, correlating with poor response to IFN-α treatment (3).
T16 197-256 Sentence denotes The cause of the silencing of IRF-4 level remained unclear.

2_test

Id Subject Object Predicate Lexical cue
16396836-8605319-76538164 36-37 8605319 denotes 1
16396836-10219069-76538165 38-39 10219069 denotes 2
16396836-11013272-76538166 193-194 11013272 denotes 3

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T1202 1-9 NN denotes response
T1203 10-12 IN denotes in
T1204 13-17 CD denotes 5–33
T1205 17-18 NN denotes %
T1206 19-21 IN denotes of
T1207 22-25 NN denotes CML
T1208 26-34 NN denotes patients
T1209 35-36 -LRB- denotes (
T1210 36-39 CD denotes 1,2
T1211 39-40 -RRB- denotes )
T1212 42-50 RB denotes Recently
T1213 50-51 -COMMA- denotes ,
T1214 52-54 PRP denotes we
T1215 55-64 VB denotes described
T1216 65-67 DT denotes an
T1217 68-76 JJ denotes impaired
T1218 77-87 NN denotes expression
T1219 88-90 IN denotes of
T1220 91-94 DT denotes the
T1221 95-105 NN denotes interferon
T1222 106-116 JJ denotes regulatory
T1223 117-123 NN denotes factor
T1224 124-125 CD denotes 4
T1225 126-127 -LRB- denotes (
T1226 127-132 NN denotes IRF-4
T1227 132-133 -RRB- denotes )
T1228 134-136 IN denotes in
T1229 137-140 NN denotes CML
T1230 140-141 -COMMA- denotes ,
T1231 142-153 VB denotes correlating
T1232 154-158 IN denotes with
T1233 159-163 JJ denotes poor
T1234 164-172 NN denotes response
T1235 173-175 TO denotes to
T1236 176-181 NN denotes IFN-α
T1237 182-191 NN denotes treatment
T1238 192-193 -LRB- denotes (
T1239 193-194 CD denotes 3
T1240 194-195 -RRB- denotes )
T1241 197-200 DT denotes The
T1242 201-206 NN denotes cause
T1243 207-209 IN denotes of
T1244 210-213 DT denotes the
T1245 214-223 NN denotes silencing
T1246 224-226 IN denotes of
T1247 227-232 NN denotes IRF-4
T1248 233-238 NN denotes level
T1249 239-247 VB denotes remained
T1250 248-255 JJ denotes unclear
T1251 257-267 NN denotes Interferon
T1252 268-278 JJ denotes regulatory
T1253 279-286 NN denotes factors
T1254 287-288 -LRB- denotes (
R872 T1202 T1203 arg1Of response,in
R873 T1205 T1203 arg2Of %,in
R874 T1205 T1204 arg1Of %,5–33
R875 T1205 T1206 arg1Of %,of
R876 T1208 T1206 arg2Of patients,of
R877 T1208 T1207 arg1Of patients,CML
R878 T1208 T1209 arg1Of patients,(
R879 T1210 T1209 arg2Of "1,2",(
R880 T1211 T1209 arg3Of ),(
R881 T1214 T1215 arg1Of we,described
R882 T1215 T1212 arg1Of described,Recently
R883 T1215 T1213 arg1Of described,","
R884 T1215 T1228 arg1Of described,in
R885 T1215 T1230 arg1Of described,","
R886 T1215 T1231 modOf described,correlating
R887 T1218 T1215 arg2Of expression,described
R888 T1218 T1216 arg1Of expression,an
R889 T1218 T1217 arg1Of expression,impaired
R890 T1218 T1219 arg1Of expression,of
R891 T1223 T1219 arg2Of factor,of
R892 T1223 T1220 arg1Of factor,the
R893 T1223 T1221 arg1Of factor,interferon
R894 T1223 T1222 arg1Of factor,regulatory
R895 T1223 T1224 arg1Of factor,4
R896 T1223 T1225 arg1Of factor,(
R897 T1226 T1225 arg2Of IRF-4,(
R898 T1227 T1225 arg3Of ),(
R899 T1229 T1228 arg2Of CML,in
R900 T1231 T1232 arg1Of correlating,with
R901 T1234 T1232 arg2Of response,with
R902 T1234 T1233 arg1Of response,poor
R903 T1234 T1235 arg1Of response,to
R904 T1237 T1235 arg2Of treatment,to
R905 T1237 T1236 arg1Of treatment,IFN-α
R906 T1237 T1238 arg1Of treatment,(
R907 T1239 T1238 arg2Of 3,(
R908 T1240 T1238 arg3Of ),(
R909 T1242 T1241 arg1Of cause,The
R910 T1242 T1243 arg1Of cause,of
R911 T1242 T1249 arg1Of cause,remained
R912 T1242 T1250 arg1Of cause,unclear
R913 T1245 T1243 arg2Of silencing,of
R914 T1245 T1244 arg1Of silencing,the
R915 T1245 T1246 arg1Of silencing,of
R916 T1248 T1246 arg2Of level,of
R917 T1248 T1247 arg1Of level,IRF-4
R918 T1250 T1249 arg2Of unclear,remained
R919 T1253 T1251 arg1Of factors,Interferon
R920 T1253 T1252 arg1Of factors,regulatory
R921 T1253 T1254 arg1Of factors,(

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T1825 1-9 NN denotes response
T1826 10-12 IN denotes in
T1827 13-14 CD denotes 5
T1828 15-17 CD denotes 33
T1829 17-18 NN denotes %
T1830 19-21 IN denotes of
T1831 22-25 NNP denotes CML
T1832 26-34 NNS denotes patients
T1833 35-36 -LRB- denotes (
T1834 36-39 CD denotes 1,2
T1835 39-40 -RRB- denotes )
T1836 40-41 . denotes .
T1837 42-50 RB denotes Recently
T1838 50-51 , denotes ,
T1839 52-54 PRP denotes we
T1840 55-64 VBD denotes described
T1841 65-67 DT denotes an
T1842 68-76 VBN denotes impaired
T1843 77-87 NN denotes expression
T1844 88-90 IN denotes of
T1845 91-94 DT denotes the
T1846 95-105 NN denotes interferon
T1847 106-116 JJ denotes regulatory
T1848 117-123 NN denotes factor
T1849 124-125 CD denotes 4
T1850 126-127 -LRB- denotes (
T1851 127-132 NN denotes IRF-4
T1852 132-133 -RRB- denotes )
T1853 134-136 IN denotes in
T1854 137-140 NNP denotes CML
T1855 140-141 , denotes ,
T1856 142-153 VBG denotes correlating
T1857 154-158 IN denotes with
T1858 159-163 JJ denotes poor
T1859 164-172 NN denotes response
T1860 173-175 TO denotes to
T1861 176-181 JJ denotes IFN-α
T1862 182-191 NN denotes treatment
T1863 192-193 -LRB- denotes (
T1864 193-194 LS denotes 3
T1865 194-195 -RRB- denotes )
T1866 195-196 . denotes .
T1867 197-200 DT denotes The
T1868 201-206 NN denotes cause
T1869 207-209 IN denotes of
T1870 210-213 DT denotes the
T1871 214-223 NN denotes silencing
T1872 224-226 IN denotes of
T1873 227-232 JJ denotes IRF-4
T1874 233-238 NN denotes level
T1875 239-247 VBD denotes remained
T1876 248-255 JJ denotes unclear
T1877 255-256 . denotes .
T1878 257-267 NNP denotes Interferon
T1879 268-278 JJ denotes regulatory
T1880 279-286 NNS denotes factors
T1881 287-288 -LRB- denotes (
R1449 T1826 T1825 prep in,response
R1450 T1827 T1826 pobj 5,in
R1451 T1828 T1829 nummod 33,%
R1453 T1830 T1829 prep of,%
R1454 T1831 T1832 compound CML,patients
R1455 T1832 T1830 pobj patients,of
R1456 T1833 T1832 punct (,patients
R1457 T1834 T1832 appos "1,2",patients
R1460 T1837 T1840 advmod Recently,described
R1461 T1838 T1840 punct ",",described
R1462 T1839 T1840 nsubj we,described
R1463 T1840 T1840 ROOT described,described
R1464 T1841 T1843 det an,expression
R1465 T1842 T1843 amod impaired,expression
R1466 T1843 T1840 dobj expression,described
R1467 T1844 T1843 prep of,expression
R1468 T1845 T1848 det the,factor
R1469 T1846 T1848 nmod interferon,factor
R1470 T1847 T1848 amod regulatory,factor
R1471 T1848 T1844 pobj factor,of
R1472 T1849 T1848 nummod 4,factor
R1473 T1850 T1848 punct (,factor
R1474 T1851 T1848 appos IRF-4,factor
R1475 T1852 T1848 punct ),factor
R1476 T1853 T1843 prep in,expression
R1477 T1854 T1853 pobj CML,in
R1478 T1855 T1840 punct ",",described
R1479 T1856 T1840 advcl correlating,described
R1480 T1857 T1856 prep with,correlating
R1481 T1858 T1859 amod poor,response
R1482 T1859 T1857 pobj response,with
R1483 T1860 T1859 prep to,response
R1484 T1861 T1862 amod IFN-α,treatment
R1485 T1862 T1860 pobj treatment,to
R1486 T1863 T1864 punct (,3
R1487 T1864 T1856 parataxis 3,correlating
R1488 T1865 T1864 punct ),3
R1489 T1866 T1840 punct .,described
R1490 T1867 T1868 det The,cause
R1491 T1868 T1875 nsubj cause,remained
R1492 T1869 T1868 prep of,cause
R1493 T1870 T1871 det the,silencing
R1494 T1871 T1869 pobj silencing,of
R1495 T1872 T1871 prep of,silencing
R1496 T1873 T1874 amod IRF-4,level
R1497 T1874 T1872 pobj level,of
R1498 T1875 T1875 ROOT remained,remained
R1499 T1876 T1875 acomp unclear,remained
R1500 T1877 T1875 punct .,remained
R1502 T1879 T1880 amod regulatory,factors

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T2573 95-125 Protein denotes interferon regulatory factor 4
T2574 127-132 Protein denotes IRF-4
T2575 176-181 Protein denotes IFN-α
T2576 77-87 Gene_expression denotes expression
T2577 77-87 Gene_expression denotes expression
T2578 68-76 Negative_regulation denotes impaired
T2579 68-76 Negative_regulation denotes impaired
T2580 227-232 Protein denotes IRF-4
T2581 214-223 Negative_regulation denotes silencing
T2582 257-286 Protein denotes Interferon regulatory factors
R2059 T2573 T2576 themeOf interferon regulatory factor 4,expression
R2060 T2574 T2577 themeOf IRF-4,expression
R2061 T2576 T2578 themeOf expression,impaired
R2062 T2577 T2579 themeOf expression,impaired
R2064 T2580 T2581 themeOf IRF-4,silencing

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T1009 68-76 Negative_regulation denotes impaired
T1010 77-87 Gene_expression denotes expression
T1011 95-125 Protein denotes interferon regulatory factor 4
T1012 127-132 Protein denotes IRF-4
T1013 176-181 Protein denotes IFN-α
T1014 214-223 Negative_regulation denotes silencing
T1015 227-232 Protein denotes IRF-4
R751 T1011 T1010 themeOf interferon regulatory factor 4,expression
R752 T1012 T1011 equivalentTo IRF-4,interferon regulatory factor 4
R753 T1015 T1014 themeOf IRF-4,silencing
R750 T1010 T1009 themeOf expression,impaired

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T1676 95-125 Q92985 denotes interferon regulatory factor 4
T1677 95-125 Q02556 denotes interferon regulatory factor 4
T1678 95-125 Q15306 denotes interferon regulatory factor 4
T1679 95-125 Q14653 denotes interferon regulatory factor 4
T1680 95-125 Q13568 denotes interferon regulatory factor 4
T1681 127-132 Q15306 denotes IRF-4
T1682 176-181 P01562 denotes IFN-α
T1683 227-232 Q15306 denotes IRF-4
T1684 257-286 Q14653 denotes Interferon regulatory factors
T1685 257-286 Q13568 denotes Interferon regulatory factors
T1686 257-286 Q92985 denotes Interferon regulatory factors
T1687 257-286 Q02556 denotes Interferon regulatory factors
T1688 257-286 Q15306 denotes Interferon regulatory factors

test2

Id Subject Object Predicate Lexical cue Negation
T957 68-76 Negative_regulation denotes impaired
T958 77-87 Gene_expression denotes expression
T959 95-125 Protein denotes interferon regulatory factor 4
T960 127-132 Protein denotes IRF-4 true
T961 176-181 Protein denotes IFN-α
T962 214-223 Negative_regulation denotes silencing
T963 227-232 Protein denotes IRF-4
R723 T958 T957 themeOf expression,impaired
R724 T959 T958 themeOf interferon regulatory factor 4,expression
R725 T960 T959 equivalentTo IRF-4,interferon regulatory factor 4
R726 T963 T962 themeOf IRF-4,silencing