PMC:1310901 / 21493-21661 JSONTXT

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    bionlp-st-ge-2016-reference-eval

    {"project":"bionlp-st-ge-2016-reference-eval","denotations":[{"id":"T10844","span":{"begin":80,"end":88},"obj":"Gene_expression"},{"id":"T10845","span":{"begin":94,"end":102},"obj":"Gene_expression"},{"id":"T10846","span":{"begin":154,"end":167},"obj":"Transcription"},{"id":"T10847","span":{"begin":154,"end":167},"obj":"Transcription"},{"id":"T10848","span":{"begin":154,"end":167},"obj":"Transcription"},{"id":"T10849","span":{"begin":154,"end":167},"obj":"Transcription"},{"id":"T10850","span":{"begin":154,"end":167},"obj":"Transcription"},{"id":"T10851","span":{"begin":154,"end":167},"obj":"Transcription"},{"id":"T10852","span":{"begin":154,"end":167},"obj":"Transcription"},{"id":"T10857","span":{"begin":74,"end":79},"obj":"Protein"}],"relations":[{"id":"R8958","pred":"themeOf","subj":"T10857","obj":"T10844"},{"id":"R8959","pred":"themeOf","subj":"T10857","obj":"T10845"}],"text":"These results indicate a distinct cause of the methylation differences in IRF-4-positive and -negative cells rather than changes in the DNMT and MBP mRNA transcription."}

    events-check-again

    {"project":"events-check-again","denotations":[{"id":"T10769","span":{"begin":74,"end":79},"obj":"Protein"},{"id":"T10770","span":{"begin":80,"end":88},"obj":"Gene_expression"},{"id":"T10771","span":{"begin":94,"end":102},"obj":"Gene_expression"},{"id":"T10772","span":{"begin":154,"end":167},"obj":"Transcription"},{"id":"T10773","span":{"begin":154,"end":167},"obj":"Transcription"},{"id":"T10774","span":{"begin":154,"end":167},"obj":"Transcription"},{"id":"T10775","span":{"begin":154,"end":167},"obj":"Transcription"},{"id":"T10776","span":{"begin":154,"end":167},"obj":"Transcription"},{"id":"T10777","span":{"begin":154,"end":167},"obj":"Transcription"},{"id":"T10778","span":{"begin":154,"end":167},"obj":"Transcription"}],"relations":[{"id":"R8925","pred":"themeOf","subj":"T10769","obj":"T10770"},{"id":"R8926","pred":"themeOf","subj":"T10769","obj":"T10771"}],"attributes":[{"id":"M229","pred":"Negation","subj":"T10771","obj":"true"}],"text":"These results indicate a distinct cause of the methylation differences in IRF-4-positive and -negative cells rather than changes in the DNMT and MBP mRNA transcription."}

    GO-CC

    {"project":"GO-CC","denotations":[{"id":"T10594","span":{"begin":103,"end":108},"obj":"http://purl.obolibrary.org/obo/GO_0005623"}],"text":"These results indicate a distinct cause of the methylation differences in IRF-4-positive and -negative cells rather than changes in the DNMT and MBP mRNA transcription."}

    sentences

    {"project":"sentences","denotations":[{"id":"T10248","span":{"begin":0,"end":168},"obj":"Sentence"},{"id":"T152","span":{"begin":0,"end":168},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"These results indicate a distinct cause of the methylation differences in IRF-4-positive and -negative cells rather than changes in the DNMT and MBP mRNA transcription."}

    pmc-enju-pas

    {"project":"pmc-enju-pas","denotations":[{"id":"T10375","span":{"begin":0,"end":5},"obj":"DT"},{"id":"T10376","span":{"begin":6,"end":13},"obj":"NN"},{"id":"T10377","span":{"begin":14,"end":22},"obj":"VB"},{"id":"T10378","span":{"begin":23,"end":24},"obj":"DT"},{"id":"T10379","span":{"begin":25,"end":33},"obj":"JJ"},{"id":"T10380","span":{"begin":34,"end":39},"obj":"NN"},{"id":"T10381","span":{"begin":40,"end":42},"obj":"IN"},{"id":"T10382","span":{"begin":43,"end":46},"obj":"DT"},{"id":"T10383","span":{"begin":47,"end":58},"obj":"NN"},{"id":"T10384","span":{"begin":59,"end":70},"obj":"NN"},{"id":"T10385","span":{"begin":71,"end":73},"obj":"IN"},{"id":"T10386","span":{"begin":74,"end":88},"obj":"JJ"},{"id":"T10387","span":{"begin":89,"end":92},"obj":"CC"},{"id":"T10388","span":{"begin":93,"end":102},"obj":"JJ"},{"id":"T10389","span":{"begin":103,"end":108},"obj":"NN"},{"id":"T10390","span":{"begin":109,"end":115},"obj":"RB"},{"id":"T10391","span":{"begin":116,"end":120},"obj":"IN"},{"id":"T10392","span":{"begin":121,"end":128},"obj":"NN"},{"id":"T10393","span":{"begin":129,"end":131},"obj":"IN"},{"id":"T10394","span":{"begin":132,"end":135},"obj":"DT"},{"id":"T10395","span":{"begin":136,"end":140},"obj":"NN"},{"id":"T10396","span":{"begin":141,"end":144},"obj":"CC"},{"id":"T10397","span":{"begin":145,"end":148},"obj":"NN"},{"id":"T10398","span":{"begin":149,"end":153},"obj":"NN"},{"id":"T10399","span":{"begin":154,"end":167},"obj":"NN"}],"relations":[{"id":"R8601","pred":"arg1Of","subj":"T10376","obj":"T10375"},{"id":"R8602","pred":"arg1Of","subj":"T10376","obj":"T10377"},{"id":"R8603","pred":"arg2Of","subj":"T10380","obj":"T10377"},{"id":"R8604","pred":"arg1Of","subj":"T10380","obj":"T10378"},{"id":"R8605","pred":"arg1Of","subj":"T10380","obj":"T10379"},{"id":"R8606","pred":"arg1Of","subj":"T10380","obj":"T10381"},{"id":"R8607","pred":"arg1Of","subj":"T10380","obj":"T10390"},{"id":"R8608","pred":"arg2Of","subj":"T10384","obj":"T10381"},{"id":"R8609","pred":"arg1Of","subj":"T10384","obj":"T10382"},{"id":"R8610","pred":"arg1Of","subj":"T10384","obj":"T10383"},{"id":"R8611","pred":"arg1Of","subj":"T10384","obj":"T10385"},{"id":"R8612","pred":"arg1Of","subj":"T10386","obj":"T10387"},{"id":"R8613","pred":"arg2Of","subj":"T10388","obj":"T10387"},{"id":"R8614","pred":"arg2Of","subj":"T10389","obj":"T10385"},{"id":"R8615","pred":"arg1Of","subj":"T10389","obj":"T10386"},{"id":"R8616","pred":"arg1Of","subj":"T10389","obj":"T10388"},{"id":"R8617","pred":"arg1Of","subj":"T10390","obj":"T10391"},{"id":"R8618","pred":"arg2Of","subj":"T10392","obj":"T10391"},{"id":"R8619","pred":"arg1Of","subj":"T10392","obj":"T10393"},{"id":"R8620","pred":"arg1Of","subj":"T10395","obj":"T10396"},{"id":"R8621","pred":"arg2Of","subj":"T10397","obj":"T10396"},{"id":"R8622","pred":"arg2Of","subj":"T10399","obj":"T10393"},{"id":"R8623","pred":"arg1Of","subj":"T10399","obj":"T10394"},{"id":"R8624","pred":"arg1Of","subj":"T10399","obj":"T10395"},{"id":"R8625","pred":"arg1Of","subj":"T10399","obj":"T10397"},{"id":"R8626","pred":"arg1Of","subj":"T10399","obj":"T10398"}],"namespaces":[{"prefix":"_base","uri":"http://kmcs.nii.ac.jp/enju/"}],"text":"These results indicate a distinct cause of the methylation differences in IRF-4-positive and -negative cells rather than changes in the DNMT and MBP mRNA transcription."}

    bionlp-st-ge-2016-coref

    {"project":"bionlp-st-ge-2016-coref","denotations":[{"id":"T10409","span":{"begin":132,"end":140},"obj":"Anaphor"},{"id":"T10410","span":{"begin":145,"end":148},"obj":"Anaphor"}],"namespaces":[{"prefix":"_base","uri":"https://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"These results indicate a distinct cause of the methylation differences in IRF-4-positive and -negative cells rather than changes in the DNMT and MBP mRNA transcription."}

    bionlp-st-ge-2016-spacy-parsed

    {"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T10557","span":{"begin":0,"end":5},"obj":"DT"},{"id":"T10558","span":{"begin":6,"end":13},"obj":"NNS"},{"id":"T10559","span":{"begin":14,"end":22},"obj":"VBP"},{"id":"T10560","span":{"begin":23,"end":24},"obj":"DT"},{"id":"T10561","span":{"begin":25,"end":33},"obj":"JJ"},{"id":"T10562","span":{"begin":34,"end":39},"obj":"NN"},{"id":"T10563","span":{"begin":40,"end":42},"obj":"IN"},{"id":"T10564","span":{"begin":43,"end":46},"obj":"DT"},{"id":"T10565","span":{"begin":47,"end":58},"obj":"NN"},{"id":"T10566","span":{"begin":59,"end":70},"obj":"NNS"},{"id":"T10567","span":{"begin":71,"end":73},"obj":"IN"},{"id":"T10568","span":{"begin":74,"end":88},"obj":"JJ"},{"id":"T10569","span":{"begin":89,"end":92},"obj":"CC"},{"id":"T10570","span":{"begin":93,"end":94},"obj":":"},{"id":"T10571","span":{"begin":94,"end":102},"obj":"JJ"},{"id":"T10572","span":{"begin":103,"end":108},"obj":"NNS"},{"id":"T10573","span":{"begin":109,"end":115},"obj":"RB"},{"id":"T10574","span":{"begin":116,"end":120},"obj":"IN"},{"id":"T10575","span":{"begin":121,"end":128},"obj":"NNS"},{"id":"T10576","span":{"begin":129,"end":131},"obj":"IN"},{"id":"T10577","span":{"begin":132,"end":135},"obj":"DT"},{"id":"T10578","span":{"begin":136,"end":140},"obj":"NNP"},{"id":"T10579","span":{"begin":141,"end":144},"obj":"CC"},{"id":"T10580","span":{"begin":145,"end":148},"obj":"NNP"},{"id":"T10581","span":{"begin":149,"end":153},"obj":"NNP"},{"id":"T10582","span":{"begin":154,"end":167},"obj":"NN"},{"id":"T10583","span":{"begin":167,"end":168},"obj":"."}],"relations":[{"id":"R8764","pred":"det","subj":"T10557","obj":"T10558"},{"id":"R8765","pred":"nsubj","subj":"T10558","obj":"T10559"},{"id":"R8766","pred":"ROOT","subj":"T10559","obj":"T10559"},{"id":"R8767","pred":"det","subj":"T10560","obj":"T10562"},{"id":"R8768","pred":"amod","subj":"T10561","obj":"T10562"},{"id":"R8769","pred":"dobj","subj":"T10562","obj":"T10559"},{"id":"R8770","pred":"prep","subj":"T10563","obj":"T10562"},{"id":"R8771","pred":"det","subj":"T10564","obj":"T10566"},{"id":"R8772","pred":"compound","subj":"T10565","obj":"T10566"},{"id":"R8773","pred":"pobj","subj":"T10566","obj":"T10563"},{"id":"R8774","pred":"prep","subj":"T10567","obj":"T10566"},{"id":"R8775","pred":"amod","subj":"T10568","obj":"T10572"},{"id":"R8776","pred":"cc","subj":"T10569","obj":"T10568"},{"id":"R8777","pred":"punct","subj":"T10570","obj":"T10571"},{"id":"R8778","pred":"amod","subj":"T10571","obj":"T10572"},{"id":"R8779","pred":"pobj","subj":"T10572","obj":"T10567"},{"id":"R8780","pred":"advmod","subj":"T10573","obj":"T10574"},{"id":"R8781","pred":"cc","subj":"T10574","obj":"T10572"},{"id":"R8782","pred":"pobj","subj":"T10575","obj":"T10574"},{"id":"R8783","pred":"prep","subj":"T10576","obj":"T10575"},{"id":"R8784","pred":"det","subj":"T10577","obj":"T10578"},{"id":"R8785","pred":"pobj","subj":"T10578","obj":"T10576"},{"id":"R8786","pred":"cc","subj":"T10579","obj":"T10578"},{"id":"R8787","pred":"compound","subj":"T10580","obj":"T10581"},{"id":"R8788","pred":"conj","subj":"T10581","obj":"T10578"},{"id":"R8789","pred":"conj","subj":"T10582","obj":"T10575"},{"id":"R8790","pred":"punct","subj":"T10583","obj":"T10559"}],"text":"These results indicate a distinct cause of the methylation differences in IRF-4-positive and -negative cells rather than changes in the DNMT and MBP mRNA transcription."}

    GO-BP

    {"project":"GO-BP","denotations":[{"id":"T10252","span":{"begin":47,"end":58},"obj":"http://purl.obolibrary.org/obo/GO_0032259"},{"id":"T10254","span":{"begin":149,"end":167},"obj":"http://purl.obolibrary.org/obo/GO_0009299"},{"id":"T10255","span":{"begin":154,"end":167},"obj":"http://purl.obolibrary.org/obo/GO_0006351"}],"text":"These results indicate a distinct cause of the methylation differences in IRF-4-positive and -negative cells rather than changes in the DNMT and MBP mRNA transcription."}

    bionlp-st-ge-2016-reference-tees

    {"project":"bionlp-st-ge-2016-reference-tees","denotations":[{"id":"T10824","span":{"begin":136,"end":140},"obj":"Protein"},{"id":"T10825","span":{"begin":145,"end":153},"obj":"Protein"},{"id":"T10826","span":{"begin":154,"end":167},"obj":"Transcription"},{"id":"T10827","span":{"begin":154,"end":167},"obj":"Transcription"}],"relations":[{"id":"R8954","pred":"themeOf","subj":"T10824","obj":"T10826"},{"id":"R8955","pred":"themeOf","subj":"T10825","obj":"T10827"}],"text":"These results indicate a distinct cause of the methylation differences in IRF-4-positive and -negative cells rather than changes in the DNMT and MBP mRNA transcription."}

    bionlp-st-ge-2016-reference

    {"project":"bionlp-st-ge-2016-reference","denotations":[{"id":"T10234","span":{"begin":74,"end":79},"obj":"Protein"},{"id":"T10235","span":{"begin":80,"end":88},"obj":"Gene_expression"},{"id":"T10236","span":{"begin":94,"end":102},"obj":"Gene_expression"},{"id":"T10237","span":{"begin":154,"end":167},"obj":"Transcription"},{"id":"T10238","span":{"begin":154,"end":167},"obj":"Transcription"},{"id":"T10239","span":{"begin":154,"end":167},"obj":"Transcription"},{"id":"T10240","span":{"begin":154,"end":167},"obj":"Transcription"},{"id":"T10241","span":{"begin":154,"end":167},"obj":"Transcription"},{"id":"T10242","span":{"begin":154,"end":167},"obj":"Transcription"},{"id":"T10243","span":{"begin":154,"end":167},"obj":"Transcription"}],"relations":[{"id":"R8478","pred":"themeOf","subj":"T10234","obj":"T10235"},{"id":"R8479","pred":"themeOf","subj":"T10234","obj":"T10236"}],"attributes":[{"id":"M221","pred":"Negation","subj":"T10236","obj":"true"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"These results indicate a distinct cause of the methylation differences in IRF-4-positive and -negative cells rather than changes in the DNMT and MBP mRNA transcription."}

    bionlp-st-ge-2016-uniprot

    {"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T10432","span":{"begin":74,"end":79},"obj":"Q15306"},{"id":"T10433","span":{"begin":136,"end":140},"obj":"P26358"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"These results indicate a distinct cause of the methylation differences in IRF-4-positive and -negative cells rather than changes in the DNMT and MBP mRNA transcription."}