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bionlp-st-ge-2016-reference-eval

Id Subject Object Predicate Lexical cue
T10829 170-178 Gene_expression denotes negative
T10853 156-164 Gene_expression denotes positive
T10855 150-155 Protein denotes IRF-4
T10860 65-70 Protein denotes DNMT1
T10861 72-78 Protein denotes DNMT3A
T10862 83-89 Protein denotes DNMT3B
T10863 99-103 Protein denotes MBD1
T10864 105-109 Protein denotes MBD2
T10865 111-115 Protein denotes MBD4
T10866 120-124 Protein denotes MeCP
T10867 131-141 Gene_expression denotes expression
T10868 131-141 Gene_expression denotes expression
T10869 131-141 Gene_expression denotes expression
T10870 131-141 Gene_expression denotes expression
T10871 131-141 Gene_expression denotes expression
T10872 131-141 Gene_expression denotes expression
R8956 T10855 T10853 themeOf IRF-4,positive
R8957 T10855 T10829 themeOf IRF-4,negative
R8965 T10860 T10867 themeOf DNMT1,expression
R8969 T10861 T10868 themeOf DNMT3A,expression
R8973 T10862 T10869 themeOf DNMT3B,expression
R8977 T10863 T10870 themeOf MBD1,expression
R8981 T10864 T10871 themeOf MBD2,expression
R8988 T10866 T10872 themeOf MeCP,expression

events-check-again

Id Subject Object Predicate Lexical cue Negation
T10737 65-70 Protein denotes DNMT1
T10738 72-78 Protein denotes DNMT3A
T10739 83-89 Protein denotes DNMT3B
T10740 99-103 Protein denotes MBD1
T10741 105-109 Protein denotes MBD2
T10742 111-115 Protein denotes MBD4
T10743 120-124 Protein denotes MeCP
T10744 126-141 Transcription denotes mRNA expression
T10745 126-141 Transcription denotes mRNA expression
T10746 126-141 Transcription denotes mRNA expression
T10747 126-141 Transcription denotes mRNA expression
T10748 126-141 Transcription denotes mRNA expression
T10749 126-141 Transcription denotes mRNA expression
T10750 126-141 Transcription denotes mRNA expression
T10751 150-155 Protein denotes IRF-4
T10752 156-164 Gene_expression denotes positive
T10753 170-178 Gene_expression denotes negative true
R8895 T10737 T10747 themeOf DNMT1,mRNA expression
R8899 T10738 T10750 themeOf DNMT3A,mRNA expression
R8903 T10739 T10749 themeOf DNMT3B,mRNA expression
R8907 T10740 T10748 themeOf MBD1,mRNA expression
R8911 T10741 T10745 themeOf MBD2,mRNA expression
R8915 T10742 T10744 themeOf MBD4,mRNA expression
R8919 T10743 T10746 themeOf MeCP,mRNA expression
R8923 T10751 T10752 themeOf IRF-4,positive
R8924 T10751 T10753 themeOf IRF-4,negative

GO-CC

Id Subject Object Predicate Lexical cue
T10592 179-184 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T10246 0-197 Sentence denotes To this end, we did not detect a significant difference in DNMT (DNMT1, DNMT3A and DNMT3B) or MBP (MBD1, MBD2, MBD4 and MeCP) mRNA expression between IRF-4-positive and -negative cells (Figure 5D).
T150 0-197 Sentence denotes To this end, we did not detect a significant difference in DNMT (DNMT1, DNMT3A and DNMT3B) or MBP (MBD1, MBD2, MBD4 and MeCP) mRNA expression between IRF-4-positive and -negative cells (Figure 5D).

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T10307 0-2 TO denotes To
T10308 3-7 DT denotes this
T10309 8-11 NN denotes end
T10310 11-12 -COMMA- denotes ,
T10311 13-15 PRP denotes we
T10312 16-19 VB denotes did
T10313 20-23 RB denotes not
T10314 24-30 VB denotes detect
T10315 31-32 DT denotes a
T10316 33-44 JJ denotes significant
T10317 45-55 NN denotes difference
T10318 56-58 IN denotes in
T10319 59-63 NN denotes DNMT
T10320 64-65 -LRB- denotes (
T10321 65-70 NN denotes DNMT1
T10322 70-71 -COMMA- denotes ,
T10323 72-78 NN denotes DNMT3A
T10324 79-82 CC denotes and
T10325 83-89 NN denotes DNMT3B
T10326 89-90 -RRB- denotes )
T10327 91-93 CC denotes or
T10328 94-97 NN denotes MBP
T10329 98-99 -LRB- denotes (
T10330 99-103 NN denotes MBD1
T10331 103-104 -COMMA- denotes ,
T10332 105-109 NN denotes MBD2
T10333 109-110 -COMMA- denotes ,
T10334 111-115 NN denotes MBD4
T10335 116-119 CC denotes and
T10336 120-124 NN denotes MeCP
T10337 124-125 -RRB- denotes )
T10338 126-130 NN denotes mRNA
T10339 131-141 NN denotes expression
T10340 142-149 IN denotes between
T10341 150-164 JJ denotes IRF-4-positive
T10342 165-168 CC denotes and
T10343 169-178 JJ denotes -negative
T10344 179-184 NN denotes cells
T10345 185-186 -LRB- denotes (
T10346 186-192 NN denotes Figure
T10347 193-195 NN denotes 5D
T10348 195-196 -RRB- denotes )
R8532 T10309 T10307 arg2Of end,To
R8533 T10309 T10308 arg1Of end,this
R8534 T10311 T10312 arg1Of we,did
R8535 T10311 T10314 arg1Of we,detect
R8536 T10314 T10307 arg1Of detect,To
R8537 T10314 T10310 arg1Of detect,","
R8538 T10314 T10312 arg2Of detect,did
R8539 T10314 T10313 arg1Of detect,not
R8540 T10317 T10316 arg1Of difference,significant
R8541 T10317 T10318 arg1Of difference,in
R8542 T10317 T10320 arg1Of difference,(
R8543 T10317 T10327 arg1Of difference,or
R8544 T10319 T10318 arg2Of DNMT,in
R8545 T10321 T10322 arg1Of DNMT1,","
R8546 T10322 T10324 arg1Of ",",and
R8547 T10323 T10322 arg2Of DNMT3A,","
R8548 T10324 T10320 arg2Of and,(
R8549 T10325 T10324 arg2Of DNMT3B,and
R8550 T10326 T10320 arg3Of ),(
R8551 T10327 T10314 arg2Of or,detect
R8552 T10327 T10315 arg1Of or,a
R8553 T10328 T10329 arg1Of MBP,(
R8554 T10330 T10331 arg1Of MBD1,","
R8555 T10331 T10333 arg1Of ",",","
R8556 T10332 T10331 arg2Of MBD2,","
R8557 T10333 T10335 arg1Of ",",and
R8558 T10334 T10333 arg2Of MBD4,","
R8559 T10335 T10329 arg2Of and,(
R8560 T10336 T10335 arg2Of MeCP,and
R8561 T10337 T10329 arg3Of ),(
R8562 T10339 T10327 arg2Of expression,or
R8563 T10339 T10328 arg1Of expression,MBP
R8564 T10339 T10338 arg1Of expression,mRNA
R8565 T10339 T10340 arg1Of expression,between
R8566 T10341 T10342 arg1Of IRF-4-positive,and
R8567 T10343 T10342 arg2Of -negative,and
R8568 T10344 T10340 arg2Of cells,between
R8569 T10344 T10341 arg1Of cells,IRF-4-positive
R8570 T10344 T10343 arg1Of cells,-negative
R8571 T10344 T10345 arg1Of cells,(
R8572 T10347 T10345 arg2Of 5D,(
R8573 T10347 T10346 arg1Of 5D,Figure
R8574 T10348 T10345 arg3Of ),(

bionlp-st-ge-2016-coref

Id Subject Object Predicate Lexical cue
T10406 105-109 Antecedent denotes MBD2
T10407 111-115 Antecedent denotes MBD4
T10408 120-124 Antecedent denotes MeCP
T10401 65-70 Antecedent denotes DNMT1
T10402 72-78 Antecedent denotes DNMT3A
T10403 83-89 Antecedent denotes DNMT3B
T10405 99-103 Antecedent denotes MBD1

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T10486 0-2 TO denotes To
T10487 3-7 DT denotes this
T10488 8-11 NN denotes end
T10489 11-12 , denotes ,
T10490 13-15 PRP denotes we
T10491 16-19 VBD denotes did
T10492 20-23 RB denotes not
T10493 24-30 VB denotes detect
T10494 31-32 DT denotes a
T10495 33-44 JJ denotes significant
T10496 45-55 NN denotes difference
T10497 56-58 IN denotes in
T10498 59-63 NNP denotes DNMT
T10499 64-65 -LRB- denotes (
T10500 65-70 NNP denotes DNMT1
T10501 70-71 , denotes ,
T10502 72-78 NNP denotes DNMT3A
T10503 79-82 CC denotes and
T10504 83-89 NNP denotes DNMT3B
T10505 89-90 -RRB- denotes )
T10506 91-93 CC denotes or
T10507 94-97 NNP denotes MBP
T10508 98-99 -LRB- denotes (
T10509 99-103 NNP denotes MBD1
T10510 103-104 , denotes ,
T10511 105-109 NNP denotes MBD2
T10512 109-110 , denotes ,
T10513 111-115 NNP denotes MBD4
T10514 116-119 CC denotes and
T10515 120-124 NNP denotes MeCP
T10516 124-125 -RRB- denotes )
T10517 126-130 NNP denotes mRNA
T10518 131-141 NN denotes expression
T10519 142-149 IN denotes between
T10520 150-164 JJ denotes IRF-4-positive
T10521 165-168 CC denotes and
T10522 169-170 : denotes -
T10523 170-178 JJ denotes negative
T10524 179-184 NNS denotes cells
T10525 185-186 -LRB- denotes (
T10526 186-192 NN denotes Figure
T10527 193-195 CD denotes 5D
T10528 195-196 -RRB- denotes )
T10529 196-197 . denotes .
R8698 T10491 T10493 aux did,detect
R8699 T10492 T10493 neg not,detect
R8700 T10493 T10493 ROOT detect,detect
R8701 T10494 T10496 det a,difference
R8702 T10495 T10496 amod significant,difference
R8703 T10496 T10493 dobj difference,detect
R8704 T10497 T10496 prep in,difference
R8705 T10498 T10497 pobj DNMT,in
R8706 T10499 T10500 punct (,DNMT1
R8707 T10500 T10498 appos DNMT1,DNMT
R8708 T10501 T10500 punct ",",DNMT1
R8709 T10502 T10500 conj DNMT3A,DNMT1
R8710 T10503 T10502 cc and,DNMT3A
R8725 T10518 T10496 conj expression,difference
R8726 T10519 T10518 prep between,expression
R8727 T10520 T10519 pobj IRF-4-positive,between
R8728 T10521 T10520 cc and,IRF-4-positive
R8729 T10522 T10523 punct -,negative
R8730 T10523 T10524 amod negative,cells
R8731 T10524 T10520 conj cells,IRF-4-positive
R8732 T10525 T10526 punct (,Figure
R8733 T10526 T10524 appos Figure,cells
R8734 T10527 T10526 nummod 5D,Figure
R8735 T10528 T10526 punct ),Figure
R8736 T10529 T10493 punct .,detect
R8693 T10486 T10493 prep To,detect
R8694 T10487 T10488 det this,end
R8695 T10488 T10486 pobj end,To
R8696 T10489 T10493 punct ",",detect
R8697 T10490 T10493 nsubj we,detect
R8711 T10504 T10502 conj DNMT3B,DNMT3A
R8712 T10505 T10504 punct ),DNMT3B
R8713 T10506 T10504 cc or,DNMT3B
R8714 T10507 T10504 conj MBP,DNMT3B
R8715 T10508 T10509 punct (,MBD1
R8716 T10509 T10504 conj MBD1,DNMT3B
R8717 T10510 T10509 punct ",",MBD1
R8718 T10511 T10509 conj MBD2,MBD1
R8719 T10512 T10511 punct ",",MBD2
R8720 T10513 T10511 conj MBD4,MBD2
R8721 T10514 T10513 cc and,MBD4
R8722 T10515 T10513 conj MeCP,MBD4
R8723 T10516 T10509 punct ),MBD1
R8724 T10517 T10518 compound mRNA,expression

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T10791 59-63 Protein denotes DNMT
T10792 65-70 Protein denotes DNMT1
T10793 72-78 Protein denotes DNMT3A
T10794 83-89 Protein denotes DNMT3B
T10795 94-97 Protein denotes MBP
T10796 99-103 Protein denotes MBD1
T10797 105-109 Protein denotes MBD2
T10798 111-115 Protein denotes MBD4
T10799 120-124 Protein denotes MeCP
T10800 45-55 Regulation denotes difference
T10801 131-141 Transcription denotes expression
T10802 131-141 Transcription denotes expression
T10803 131-141 Transcription denotes expression
T10804 131-141 Transcription denotes expression
T10805 131-141 Transcription denotes expression
T10806 131-141 Transcription denotes expression
T10807 131-141 Transcription denotes expression
T10808 131-141 Transcription denotes expression
T10809 131-141 Transcription denotes expression
T10810 45-55 Regulation denotes difference
T10811 45-55 Regulation denotes difference
T10812 45-55 Regulation denotes difference
T10813 45-55 Regulation denotes difference
T10814 45-55 Regulation denotes difference
T10815 45-55 Regulation denotes difference
T10816 45-55 Regulation denotes difference
T10817 45-55 Regulation denotes difference
T10818 45-55 Regulation denotes difference
R8933 T10791 T10800 themeOf DNMT,difference
R8934 T10791 T10801 themeOf DNMT,expression
R8935 T10792 T10802 themeOf DNMT1,expression
R8936 T10793 T10803 themeOf DNMT3A,expression
R8937 T10794 T10804 themeOf DNMT3B,expression
R8938 T10795 T10805 themeOf MBP,expression
R8939 T10796 T10806 themeOf MBD1,expression
R8940 T10797 T10807 themeOf MBD2,expression
R8941 T10798 T10808 themeOf MBD4,expression
R8942 T10799 T10809 themeOf MeCP,expression
R8943 T10801 T10810 themeOf expression,difference
R8944 T10802 T10811 themeOf expression,difference
R8945 T10803 T10812 themeOf expression,difference
R8946 T10804 T10813 themeOf expression,difference
R8947 T10805 T10814 themeOf expression,difference
R8948 T10806 T10815 themeOf expression,difference
R8949 T10807 T10816 themeOf expression,difference
R8950 T10808 T10817 themeOf expression,difference
R8951 T10809 T10818 themeOf expression,difference

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue Negation
T10212 126-141 Transcription denotes mRNA expression
T10213 126-141 Transcription denotes mRNA expression
T10214 126-141 Transcription denotes mRNA expression
T10215 126-141 Transcription denotes mRNA expression
T10216 150-155 Protein denotes IRF-4
T10217 156-164 Gene_expression denotes positive
T10218 170-178 Gene_expression denotes negative true
T10202 65-70 Protein denotes DNMT1
T10203 72-78 Protein denotes DNMT3A
T10204 83-89 Protein denotes DNMT3B
T10205 99-103 Protein denotes MBD1
T10206 105-109 Protein denotes MBD2
T10207 111-115 Protein denotes MBD4
T10208 120-124 Protein denotes MeCP
T10209 126-141 Transcription denotes mRNA expression
T10210 126-141 Transcription denotes mRNA expression
T10211 126-141 Transcription denotes mRNA expression
R8452 T10203 T10215 themeOf DNMT3A,mRNA expression
R8456 T10204 T10214 themeOf DNMT3B,mRNA expression
R8460 T10205 T10213 themeOf MBD1,mRNA expression
R8464 T10206 T10210 themeOf MBD2,mRNA expression
R8468 T10207 T10209 themeOf MBD4,mRNA expression
R8472 T10208 T10211 themeOf MeCP,mRNA expression
R8476 T10216 T10217 themeOf IRF-4,positive
R8477 T10216 T10218 themeOf IRF-4,negative
R8448 T10202 T10212 themeOf DNMT1,mRNA expression

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T10421 59-63 P26358 denotes DNMT
T10422 65-70 P26358 denotes DNMT1
T10423 72-78 Q9Y6K1 denotes DNMT3A
T10424 83-89 Q9UBC3 denotes DNMT3B
T10425 99-103 Q9UIS9 denotes MBD1
T10426 105-109 Q9UBB5 denotes MBD2
T10427 111-115 O95243 denotes MBD4
T10428 120-124 P51608 denotes MeCP
T10429 150-155 Q15306 denotes IRF-4