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PMC:1310901 / 19444-19620 JSONTXT

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bionlp-st-ge-2016-reference-eval

Id Subject Object Predicate Lexical cue
T9618 127-135 Gene_expression denotes negative
T9626 104-112 Gene_expression denotes positive
T9631 98-103 Protein denotes IRF-4
T9632 121-126 Protein denotes IRF-4
R8018 T9631 T9626 themeOf IRF-4,positive
R8019 T9632 T9618 themeOf IRF-4,negative

events-check-again

Id Subject Object Predicate Lexical cue Negation
T9592 98-103 Protein denotes IRF-4
T9593 104-112 Gene_expression denotes positive
T9594 121-126 Protein denotes IRF-4
T9595 127-135 Gene_expression denotes negative true
R8004 T9592 T9593 themeOf IRF-4,positive
R8005 T9594 T9595 themeOf IRF-4,negative

GO-CC

Id Subject Object Predicate Lexical cue
T9489 136-141 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T8568 0-176 Sentence denotes In addition, two CpG sites located in a NFκB (#48) and a SP1 element (#45) are less methylated in IRF-4-positive than in IRF-4-negative cells (mean number of methylated clones:
T138 0-176 Sentence denotes In addition, two CpG sites located in a NFκB (#48) and a SP1 element (#45) are less methylated in IRF-4-positive than in IRF-4-negative cells (mean number of methylated clones:

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T8947 0-2 IN denotes In
T8948 3-11 NN denotes addition
T8949 11-12 -COMMA- denotes ,
T8950 13-16 CD denotes two
T8951 17-20 NN denotes CpG
T8952 21-26 NN denotes sites
T8953 27-34 JJ denotes located
T8954 35-37 IN denotes in
T8955 38-39 DT denotes a
T8956 40-44 NN denotes NFκB
T8957 45-46 -LRB- denotes (
T8958 46-47 -SHARP- denotes #
T8959 47-49 CD denotes 48
T8960 49-50 -RRB- denotes )
T8961 51-54 CC denotes and
T8962 55-56 DT denotes a
T8963 57-60 NN denotes SP1
T8964 61-68 NN denotes element
T8965 69-70 -LRB- denotes (
T8966 70-71 -SHARP- denotes #
T8967 71-73 CD denotes 45
T8968 73-74 -RRB- denotes )
T8969 75-78 VB denotes are
T8970 79-83 RB denotes less
T8971 84-94 VB denotes methylated
T8972 95-97 IN denotes in
T8973 98-112 JJ denotes IRF-4-positive
T8974 113-117 IN denotes than
T8975 118-120 IN denotes in
T8976 121-135 JJ denotes IRF-4-negative
T8977 136-141 NN denotes cells
T8978 142-143 -LRB- denotes (
T8979 143-147 JJ denotes mean
T8980 148-154 NN denotes number
T8981 155-157 IN denotes of
T8982 158-168 VB denotes methylated
T8983 169-175 NN denotes clones
T8984 175-176 -COLON- denotes :
R7456 T8948 T8947 arg2Of addition,In
R7457 T8952 T8950 arg1Of sites,two
R7458 T8952 T8951 arg1Of sites,CpG
R7459 T8952 T8953 arg1Of sites,located
R7460 T8952 T8969 arg1Of sites,are
R7461 T8952 T8971 arg1Of sites,methylated
R7462 T8953 T8954 arg1Of located,in
R7463 T8956 T8955 arg1Of NFκB,a
R7464 T8956 T8957 arg1Of NFκB,(
R7465 T8956 T8961 arg1Of NFκB,and
R7466 T8959 T8957 arg2Of 48,(
R7467 T8959 T8958 arg1Of 48,#
R7468 T8960 T8957 arg3Of ),(
R7469 T8961 T8954 arg2Of and,in
R7470 T8964 T8961 arg2Of element,and
R7471 T8964 T8962 arg1Of element,a
R7472 T8964 T8963 arg1Of element,SP1
R7473 T8964 T8965 arg1Of element,(
R7474 T8967 T8965 arg2Of 45,(
R7475 T8967 T8966 arg1Of 45,#
R7476 T8968 T8965 arg3Of ),(
R7477 T8969 T8947 arg1Of are,In
R7478 T8969 T8949 arg1Of are,","
R7479 T8971 T8969 arg2Of methylated,are
R7480 T8971 T8970 arg1Of methylated,less
R7481 T8971 T8972 arg1Of methylated,in
R7482 T8971 T8974 arg1Of methylated,than
R7483 T8973 T8972 arg2Of IRF-4-positive,in
R7484 T8975 T8974 arg2Of in,than
R7485 T8980 T8975 arg2Of number,in
R7486 T8980 T8976 arg1Of number,IRF-4-negative
R7487 T8980 T8977 arg1Of number,cells
R7488 T8980 T8978 arg1Of number,(
R7489 T8980 T8979 arg1Of number,mean
R7490 T8980 T8981 arg1Of number,of
R7491 T8983 T8981 arg2Of clones,of
R7492 T8983 T8982 arg2Of clones,methylated
R7493 T8983 T8984 arg1Of clones,:

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T9408 0-2 IN denotes In
T9409 3-11 NN denotes addition
T9410 11-12 , denotes ,
T9411 13-16 CD denotes two
T9412 17-20 NNP denotes CpG
T9413 21-26 NNS denotes sites
T9414 27-34 VBN denotes located
T9415 35-37 IN denotes in
T9416 38-39 DT denotes a
T9417 40-44 NNP denotes NFκB
T9418 45-46 -LRB- denotes (
T9419 46-47 # denotes #
T9420 47-49 CD denotes 48
T9421 49-50 -RRB- denotes )
T9422 51-54 CC denotes and
T9423 55-56 DT denotes a
T9424 57-60 NNP denotes SP1
T9425 61-68 NN denotes element
T9426 69-70 -LRB- denotes (
T9427 70-71 # denotes #
T9428 71-73 CD denotes 45
T9429 73-74 -RRB- denotes )
T9430 75-78 VBP denotes are
T9431 79-83 RBR denotes less
T9432 84-94 VBN denotes methylated
T9433 95-97 IN denotes in
T9434 98-112 JJ denotes IRF-4-positive
T9435 113-117 IN denotes than
T9436 118-120 IN denotes in
T9437 121-135 JJ denotes IRF-4-negative
T9438 136-141 NNS denotes cells
T9439 142-143 -LRB- denotes (
T9440 143-147 JJ denotes mean
T9441 148-154 NN denotes number
T9442 155-157 IN denotes of
T9443 158-168 JJ denotes methylated
T9444 169-175 NNS denotes clones
T9445 175-176 : denotes :
R7899 T9408 T9430 prep In,are
R7900 T9409 T9408 pobj addition,In
R7901 T9410 T9430 punct ",",are
R7902 T9411 T9413 nummod two,sites
R7903 T9412 T9413 compound CpG,sites
R7904 T9413 T9430 nsubj sites,are
R7905 T9414 T9413 acl located,sites
R7906 T9415 T9414 prep in,located
R7907 T9416 T9417 det a,NFκB
R7908 T9417 T9415 pobj NFκB,in
R7909 T9418 T9417 punct (,NFκB
R7910 T9419 T9420 nmod #,48
R7911 T9420 T9414 npadvmod 48,located
R7912 T9421 T9414 punct ),located
R7913 T9422 T9414 cc and,located
R7914 T9423 T9425 det a,element
R7915 T9424 T9425 compound SP1,element
R7916 T9425 T9413 conj element,sites
R7917 T9426 T9425 punct (,element
R7918 T9427 T9428 nmod #,45
R7919 T9428 T9425 appos 45,element
R7920 T9429 T9425 punct ),element
R7921 T9430 T9430 ROOT are,are
R7922 T9431 T9432 advmod less,methylated
R7923 T9432 T9430 attr methylated,are
R7924 T9433 T9432 prep in,methylated
R7925 T9434 T9433 pobj IRF-4-positive,in
R7926 T9435 T9432 prep than,methylated
R7927 T9436 T9435 prep in,than
R7928 T9437 T9438 amod IRF-4-negative,cells
R7929 T9438 T9436 pobj cells,in
R7930 T9439 T9432 punct (,methylated
R7931 T9440 T9441 amod mean,number
R7932 T9441 T9432 appos number,methylated
R7933 T9442 T9441 prep of,number
R7934 T9443 T9444 amod methylated,clones
R7935 T9444 T9442 pobj clones,of
R7936 T9445 T9441 punct :,number

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T9609 17-26 Protein denotes CpG sites
T9610 40-44 Protein denotes NFκB
T9611 57-60 Protein denotes SP1

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue Negation
T8552 98-103 Protein denotes IRF-4
T8553 104-112 Gene_expression denotes positive
T8554 121-126 Protein denotes IRF-4
T8555 127-135 Gene_expression denotes negative true
R7078 T8552 T8553 themeOf IRF-4,positive
R7079 T8554 T8555 themeOf IRF-4,negative

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T9018 57-60 P08047 denotes SP1
T9019 98-103 Q15306 denotes IRF-4
T9020 121-126 Q15306 denotes IRF-4

test2

Id Subject Object Predicate Lexical cue
T8525 98-103 Protein denotes IRF-4
T8526 104-112 Gene_expression denotes positive
T8527 121-126 Protein denotes IRF-4
T8528 127-135 Gene_expression denotes negative
R7066 T8525 T8526 themeOf IRF-4,positive
R7067 T8527 T8528 themeOf IRF-4,negative