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PMC:1310901 / 19250-19443 JSONTXT

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bionlp-st-ge-2016-reference-eval

Id Subject Object Predicate Lexical cue
T9624 165-172 Negative_regulation denotes absence
T9625 182-192 Gene_expression denotes expression
T9630 176-181 Protein denotes IRF-4
R8014 T9625 T9624 themeOf expression,absence
R8017 T9630 T9625 themeOf IRF-4,expression

events-check-again

Id Subject Object Predicate Lexical cue
T9589 165-172 Negative_regulation denotes absence
T9590 176-181 Protein denotes IRF-4
T9591 182-192 Gene_expression denotes expression
R8002 T9590 T9591 themeOf IRF-4,expression
R8003 T9591 T9589 themeOf expression,absence

sentences

Id Subject Object Predicate Lexical cue
T8567 0-193 Sentence denotes Furthermore, three CpG sites at the 5′ end (#54, 56, 58) and two CpG motifs at the 3′ end (#1, 2) showed this direct correlation between high methylation status and absence of IRF-4 expression.
T137 0-193 Sentence denotes Furthermore, three CpG sites at the 5′ end (#54, 56, 58) and two CpG motifs at the 3′ end (#1, 2) showed this direct correlation between high methylation status and absence of IRF-4 expression.

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T8903 0-11 RB denotes Furthermore
T8904 11-12 -COMMA- denotes ,
T8905 13-18 CD denotes three
T8906 19-22 NN denotes CpG
T8907 23-28 NN denotes sites
T8908 29-31 IN denotes at
T8909 32-35 DT denotes the
T8910 36-38 NN denotes 5′
T8911 39-42 NN denotes end
T8912 43-44 -LRB- denotes (
T8913 44-45 -SHARP- denotes #
T8914 45-47 CD denotes 54
T8915 47-48 -COMMA- denotes ,
T8916 49-51 CD denotes 56
T8917 51-52 -COMMA- denotes ,
T8918 53-55 CD denotes 58
T8919 55-56 -RRB- denotes )
T8920 57-60 CC denotes and
T8921 61-64 CD denotes two
T8922 65-68 NN denotes CpG
T8923 69-75 NN denotes motifs
T8924 76-78 IN denotes at
T8925 79-82 DT denotes the
T8926 83-85 NN denotes 3′
T8927 86-89 NN denotes end
T8928 90-91 -LRB- denotes (
T8929 91-92 -SHARP- denotes #
T8930 92-93 CD denotes 1
T8931 93-94 -COMMA- denotes ,
T8932 95-96 CD denotes 2
T8933 96-97 -RRB- denotes )
T8934 98-104 VB denotes showed
T8935 105-109 DT denotes this
T8936 110-116 JJ denotes direct
T8937 117-128 NN denotes correlation
T8938 129-136 IN denotes between
T8939 137-141 JJ denotes high
T8940 142-153 NN denotes methylation
T8941 154-160 NN denotes status
T8942 161-164 CC denotes and
T8943 165-172 NN denotes absence
T8944 173-175 IN denotes of
T8945 176-181 NN denotes IRF-4
T8946 182-192 NN denotes expression
R7413 T8907 T8905 arg1Of sites,three
R7414 T8907 T8906 arg1Of sites,CpG
R7415 T8907 T8908 arg1Of sites,at
R7416 T8907 T8912 arg1Of sites,(
R7417 T8907 T8920 arg1Of sites,and
R7418 T8911 T8908 arg2Of end,at
R7419 T8911 T8909 arg1Of end,the
R7420 T8911 T8910 arg1Of end,5′
R7421 T8914 T8915 arg1Of 54,","
R7422 T8915 T8912 arg2Of ",",(
R7423 T8915 T8913 arg1Of ",",#
R7424 T8915 T8917 arg1Of ",",","
R7425 T8916 T8915 arg2Of 56,","
R7426 T8918 T8917 arg2Of 58,","
R7427 T8919 T8912 arg3Of ),(
R7428 T8920 T8924 arg1Of and,at
R7429 T8920 T8928 arg1Of and,(
R7430 T8920 T8934 arg1Of and,showed
R7431 T8923 T8920 arg2Of motifs,and
R7432 T8923 T8921 arg1Of motifs,two
R7433 T8923 T8922 arg1Of motifs,CpG
R7434 T8927 T8924 arg2Of end,at
R7435 T8927 T8925 arg1Of end,the
R7436 T8927 T8926 arg1Of end,3′
R7437 T8930 T8928 arg2Of 1,(
R7438 T8930 T8929 arg1Of 1,#
R7439 T8930 T8931 arg1Of 1,","
R7440 T8932 T8931 arg2Of 2,","
R7441 T8933 T8928 arg3Of ),(
R7442 T8934 T8903 arg1Of showed,Furthermore
R7443 T8934 T8904 arg1Of showed,","
R7444 T8937 T8934 arg2Of correlation,showed
R7445 T8937 T8935 arg1Of correlation,this
R7446 T8937 T8936 arg1Of correlation,direct
R7447 T8937 T8938 arg1Of correlation,between
R7448 T8941 T8939 arg1Of status,high
R7449 T8941 T8940 arg1Of status,methylation
R7450 T8941 T8942 arg1Of status,and
R7451 T8942 T8938 arg2Of and,between
R7452 T8943 T8942 arg2Of absence,and
R7453 T8943 T8944 arg1Of absence,of
R7454 T8946 T8944 arg2Of expression,of
R7455 T8946 T8945 arg1Of expression,IRF-4

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T9361 0-11 RB denotes Furthermore
T9362 11-12 , denotes ,
T9363 13-18 CD denotes three
T9364 19-22 NNP denotes CpG
T9365 23-28 NNS denotes sites
T9366 29-31 IN denotes at
T9367 32-35 DT denotes the
T9368 36-37 CD denotes 5
T9369 37-38 NN denotes ′
T9370 39-42 NN denotes end
T9371 43-44 -LRB- denotes (
T9372 44-45 # denotes #
T9373 45-47 CD denotes 54
T9374 47-48 , denotes ,
T9375 49-51 CD denotes 56
T9376 51-52 , denotes ,
T9377 53-55 CD denotes 58
T9378 55-56 -RRB- denotes )
T9379 57-60 CC denotes and
T9380 61-64 CD denotes two
T9381 65-68 NNP denotes CpG
T9382 69-75 NNS denotes motifs
T9383 76-78 IN denotes at
T9384 79-82 DT denotes the
T9385 83-84 CD denotes 3
T9386 84-85 NN denotes ′
T9387 86-89 NN denotes end
T9388 90-91 -LRB- denotes (
T9389 91-92 # denotes #
T9390 92-93 CD denotes 1
T9391 93-94 , denotes ,
T9392 95-96 CD denotes 2
T9393 96-97 -RRB- denotes )
T9394 98-104 VBD denotes showed
T9395 105-109 DT denotes this
T9396 110-116 JJ denotes direct
T9397 117-128 NN denotes correlation
T9398 129-136 IN denotes between
T9399 137-141 JJ denotes high
T9400 142-153 NN denotes methylation
T9401 154-160 NN denotes status
T9402 161-164 CC denotes and
T9403 165-172 NN denotes absence
T9404 173-175 IN denotes of
T9405 176-181 NN denotes IRF-4
T9406 182-192 NN denotes expression
T9407 192-193 . denotes .
R7852 T9361 T9394 advmod Furthermore,showed
R7853 T9362 T9394 punct ",",showed
R7854 T9363 T9365 nummod three,sites
R7855 T9364 T9365 compound CpG,sites
R7856 T9365 T9394 nsubj sites,showed
R7857 T9366 T9365 prep at,sites
R7858 T9367 T9370 det the,end
R7859 T9368 T9369 nummod 5,′
R7860 T9369 T9370 compound ′,end
R7861 T9370 T9366 pobj end,at
R7862 T9371 T9370 punct (,end
R7863 T9372 T9377 punct #,58
R7864 T9373 T9372 nummod 54,#
R7865 T9374 T9375 punct ",",56
R7866 T9375 T9377 dep 56,58
R7867 T9376 T9377 punct ",",58
R7868 T9377 T9370 appos 58,end
R7869 T9378 T9370 punct ),end
R7870 T9379 T9365 cc and,sites
R7871 T9380 T9382 nummod two,motifs
R7872 T9381 T9382 compound CpG,motifs
R7873 T9382 T9365 conj motifs,sites
R7874 T9383 T9382 prep at,motifs
R7875 T9384 T9387 det the,end
R7876 T9385 T9386 nummod 3,′
R7877 T9386 T9387 compound ′,end
R7878 T9387 T9383 pobj end,at
R7879 T9388 T9394 punct (,showed
R7880 T9389 T9394 nsubj #,showed
R7881 T9390 T9389 nummod 1,#
R7882 T9391 T9389 punct ",",#
R7883 T9392 T9389 appos 2,#
R7884 T9393 T9394 punct ),showed
R7885 T9394 T9394 ROOT showed,showed
R7886 T9395 T9397 det this,correlation
R7887 T9396 T9397 amod direct,correlation
R7888 T9397 T9394 dobj correlation,showed
R7889 T9398 T9397 prep between,correlation
R7890 T9399 T9400 amod high,methylation
R7891 T9400 T9401 compound methylation,status
R7892 T9401 T9398 pobj status,between
R7893 T9402 T9401 cc and,status
R7894 T9403 T9401 conj absence,status
R7895 T9404 T9401 prep of,status
R7896 T9405 T9406 compound IRF-4,expression
R7897 T9406 T9404 pobj expression,of
R7898 T9407 T9394 punct .,showed

GO-BP

Id Subject Object Predicate Lexical cue
T8575 142-153 http://purl.obolibrary.org/obo/GO_0032259 denotes methylation

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T9606 19-28 Protein denotes CpG sites
T9607 176-181 Protein denotes IRF-4
T9608 182-192 Gene_expression denotes expression
R8009 T9607 T9608 themeOf IRF-4,expression

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T8549 165-172 Negative_regulation denotes absence
T8550 176-181 Protein denotes IRF-4
T8551 182-192 Gene_expression denotes expression
R7076 T8550 T8551 themeOf IRF-4,expression
R7077 T8551 T8549 themeOf expression,absence

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T9017 176-181 Q15306 denotes IRF-4

test2

Id Subject Object Predicate Lexical cue
T8522 165-172 Negative_regulation denotes absence
T8523 176-181 Protein denotes IRF-4
T8524 182-192 Gene_expression denotes expression
R7064 T8523 T8524 themeOf IRF-4,expression
R7065 T8524 T8522 themeOf expression,absence