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bionlp-st-ge-2016-reference-eval

Id Subject Object Predicate Lexical cue
T9617 794-802 Gene_expression denotes positive
T9618 2035-2043 Gene_expression denotes negative
T9619 2167-2177 Regulation denotes regulation
T9620 2187-2197 Gene_expression denotes expression
T9621 863-871 Gene_expression denotes negative
T9622 1566-1574 Gene_expression denotes negative
T9623 1680-1688 Gene_expression denotes positive
T9624 1879-1886 Negative_regulation denotes absence
T9625 1896-1906 Gene_expression denotes expression
T9626 2012-2020 Gene_expression denotes positive
T9627 26-31 Protein denotes IRF-4
T9628 1560-1565 Protein denotes IRF-4
T9629 1674-1679 Protein denotes IRF-4
T9630 1890-1895 Protein denotes IRF-4
T9631 2006-2011 Protein denotes IRF-4
T9632 2029-2034 Protein denotes IRF-4
T9633 2181-2186 Protein denotes IRF-4
T9634 136-141 Protein denotes IRF-4
T9635 766-771 Protein denotes IRF-4
T9636 788-793 Protein denotes IRF-4
T9637 831-836 Protein denotes IRF-4
T9638 857-862 Protein denotes IRF-4
T9639 930-935 Protein denotes IRF-4
T9640 950-955 Protein denotes IRF-4
T9641 1012-1017 Protein denotes IRF-4
T9642 1018-1032 Gene_expression denotes negative cells
T9643 956-970 Gene_expression denotes positive cells
R8013 T9620 T9619 themeOf expression,regulation
R8014 T9625 T9624 themeOf expression,absence
R8015 T9628 T9622 themeOf IRF-4,negative
R8016 T9629 T9623 themeOf IRF-4,positive
R8017 T9630 T9625 themeOf IRF-4,expression
R8018 T9631 T9626 themeOf IRF-4,positive
R8019 T9632 T9618 themeOf IRF-4,negative
R8020 T9633 T9620 themeOf IRF-4,expression
R8021 T9636 T9617 themeOf IRF-4,positive
R8022 T9638 T9621 themeOf IRF-4,negative
R8023 T9640 T9643 themeOf IRF-4,positive cells
R8024 T9641 T9642 themeOf IRF-4,negative cells

events-check-again

Id Subject Object Predicate Lexical cue Negation Speculation
T9598 2187-2197 Gene_expression denotes expression
T9572 26-31 Protein denotes IRF-4
T9573 136-141 Protein denotes IRF-4
T9574 766-771 Protein denotes IRF-4
T9575 788-793 Protein denotes IRF-4
T9576 794-802 Gene_expression denotes positive
T9577 831-836 Protein denotes IRF-4
T9578 857-862 Protein denotes IRF-4
T9579 863-871 Gene_expression denotes negative true
T9580 930-935 Protein denotes IRF-4
T9581 950-955 Protein denotes IRF-4
T9582 956-964 Gene_expression denotes positive
T9583 1012-1017 Protein denotes IRF-4
T9584 1018-1026 Gene_expression denotes negative true
T9585 1560-1565 Protein denotes IRF-4
T9586 1566-1574 Gene_expression denotes negative true
T9587 1674-1679 Protein denotes IRF-4
T9588 1680-1688 Gene_expression denotes positive
T9589 1879-1886 Negative_regulation denotes absence
T9590 1890-1895 Protein denotes IRF-4
T9591 1896-1906 Gene_expression denotes expression
T9592 2006-2011 Protein denotes IRF-4
T9593 2012-2020 Gene_expression denotes positive
T9594 2029-2034 Protein denotes IRF-4
T9595 2035-2043 Gene_expression denotes negative true
T9596 2167-2177 Regulation denotes regulation true
T9597 2181-2186 Protein denotes IRF-4
R7996 T9575 T9576 themeOf IRF-4,positive
R7997 T9578 T9579 themeOf IRF-4,negative
R7998 T9581 T9582 themeOf IRF-4,positive
R7999 T9583 T9584 themeOf IRF-4,negative
R8000 T9585 T9586 themeOf IRF-4,negative
R8001 T9587 T9588 themeOf IRF-4,positive
R8002 T9590 T9591 themeOf IRF-4,expression
R8003 T9591 T9589 themeOf expression,absence
R8004 T9592 T9593 themeOf IRF-4,positive
R8005 T9594 T9595 themeOf IRF-4,negative
R8006 T9597 T9598 themeOf IRF-4,expression
R8007 T9598 T9596 themeOf expression,regulation

GO-CC

Id Subject Object Predicate Lexical cue
T9481 73-78 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T9482 208-213 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T9483 263-268 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T9484 965-970 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T9485 1027-1032 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T9486 1207-1212 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T9487 1379-1384 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T9488 1689-1694 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T9489 2044-2049 http://purl.obolibrary.org/obo/GO_0005623 denotes cells
T9490 2210-2215 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T8559 0-78 Sentence denotes Specific CpG sites in the IRF-4 promoter are methylated in hematopoietic cells
T8560 79-410 Sentence denotes In order to exactly map the methylation sites within the IRF-4 promoter, we treated DNA of Jurkat, CML-T1, U-937, K-562 and EM-2 cells as well as of SD-1, RPMI-8226 and BV-173 control cells with bisulfite, which chemically converts unmethylated cytosine to uracil, whereas it has no effect on methylated cytosine, i.e. in CpG (34).
T8561 411-493 Sentence denotes This technique is especially useful for detection of unknown methylation patterns.
T8562 494-673 Sentence denotes PCR amplification, cloning and sequencing of the bisulfite-treated DNA showed a specific methylation pattern of the analyzed 62 CpG sites in all cell lines (Figure 4 and Table 1).
T8563 674-873 Sentence denotes In general, the methylational status ranged from one cell line with a nearly non-methylated IRF-4 promoter (SD-1, IRF-4-positive) to a completely methylated IRF-4 promoter in CML-T1 (IRF-4-negative).
T8564 874-1068 Sentence denotes Interestingly, the percentage of CpG methylation in the IRF-4 promoter from IRF-4-positive cells was very low (mean 24%) as compared with IRF-4-negative cells (mean 94%) (Figure 4A and Table 1).
T8565 1069-1435 Sentence denotes A 5′-region (R1) with 13 hypermethylated CpG sites (mean number of methylated clones 5.5 of 8 with 77% methylated CpGs) was found in most cells (except SD-1 and RPMI-8226) and a 3′-region (R3) of 6 hypomethylated CpG sites (mean number of methylated clones 1.7 of 8 with 33% methylated CpGs) was found in most cells (except CML-T1 and U-937) (Figure 4A and Table 1).
T8566 1436-1713 Sentence denotes Intriguingly, a stretch of 13 CpG sites (#10–22; R2) was detected in between these regions, which were highly methylated in IRF-4-negative (mean number of methylated clones 7.1 of 8 with 89% methylated CpGs) but totally non-methylated in IRF-4-positive cells (Figure 4A and B).
T8567 1714-1907 Sentence denotes Furthermore, three CpG sites at the 5′ end (#54, 56, 58) and two CpG motifs at the 3′ end (#1, 2) showed this direct correlation between high methylation status and absence of IRF-4 expression.
T8568 1908-2084 Sentence denotes In addition, two CpG sites located in a NFκB (#48) and a SP1 element (#45) are less methylated in IRF-4-positive than in IRF-4-negative cells (mean number of methylated clones:
T8569 2085-2101 Sentence denotes 1/8 versus 8/8).
T8570 2102-2216 Sentence denotes These results indicate the involvement of CpG methylation in the regulation of IRF-4 expression in leukemic cells.
T129 0-78 Sentence denotes Specific CpG sites in the IRF-4 promoter are methylated in hematopoietic cells
T130 79-410 Sentence denotes In order to exactly map the methylation sites within the IRF-4 promoter, we treated DNA of Jurkat, CML-T1, U-937, K-562 and EM-2 cells as well as of SD-1, RPMI-8226 and BV-173 control cells with bisulfite, which chemically converts unmethylated cytosine to uracil, whereas it has no effect on methylated cytosine, i.e. in CpG (34).
T131 411-493 Sentence denotes This technique is especially useful for detection of unknown methylation patterns.
T132 494-673 Sentence denotes PCR amplification, cloning and sequencing of the bisulfite-treated DNA showed a specific methylation pattern of the analyzed 62 CpG sites in all cell lines (Figure 4 and Table 1).
T133 674-873 Sentence denotes In general, the methylational status ranged from one cell line with a nearly non-methylated IRF-4 promoter (SD-1, IRF-4-positive) to a completely methylated IRF-4 promoter in CML-T1 (IRF-4-negative).
T134 874-1068 Sentence denotes Interestingly, the percentage of CpG methylation in the IRF-4 promoter from IRF-4-positive cells was very low (mean 24%) as compared with IRF-4-negative cells (mean 94%) (Figure 4A and Table 1).
T135 1069-1435 Sentence denotes A 5′-region (R1) with 13 hypermethylated CpG sites (mean number of methylated clones 5.5 of 8 with 77% methylated CpGs) was found in most cells (except SD-1 and RPMI-8226) and a 3′-region (R3) of 6 hypomethylated CpG sites (mean number of methylated clones 1.7 of 8 with 33% methylated CpGs) was found in most cells (except CML-T1 and U-937) (Figure 4A and Table 1).
T136 1436-1713 Sentence denotes Intriguingly, a stretch of 13 CpG sites (#10–22; R2) was detected in between these regions, which were highly methylated in IRF-4-negative (mean number of methylated clones 7.1 of 8 with 89% methylated CpGs) but totally non-methylated in IRF-4-positive cells (Figure 4A and B).
T137 1714-1907 Sentence denotes Furthermore, three CpG sites at the 5′ end (#54, 56, 58) and two CpG motifs at the 3′ end (#1, 2) showed this direct correlation between high methylation status and absence of IRF-4 expression.
T138 1908-2084 Sentence denotes In addition, two CpG sites located in a NFκB (#48) and a SP1 element (#45) are less methylated in IRF-4-positive than in IRF-4-negative cells (mean number of methylated clones:
T139 2085-2101 Sentence denotes 1/8 versus 8/8).
T140 2102-2216 Sentence denotes These results indicate the involvement of CpG methylation in the regulation of IRF-4 expression in leukemic cells.

2_test

Id Subject Object Predicate Lexical cue
16396836-10361102-76538197 406-408 10361102 denotes 34

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T8578 0-8 JJ denotes Specific
T8579 9-12 NN denotes CpG
T8580 13-18 NN denotes sites
T8581 19-21 IN denotes in
T8582 22-25 DT denotes the
T8583 26-31 NN denotes IRF-4
T8584 32-40 NN denotes promoter
T8585 41-44 VB denotes are
T8586 45-55 VB denotes methylated
T8587 56-58 IN denotes in
T8588 59-72 JJ denotes hematopoietic
T8589 73-78 NN denotes cells
T8590 79-81 IN denotes In
T8591 82-87 NN denotes order
T8592 88-90 TO denotes to
T8593 91-98 RB denotes exactly
T8594 99-102 VB denotes map
T8595 103-106 DT denotes the
T8596 107-118 NN denotes methylation
T8597 119-124 NN denotes sites
T8598 125-131 IN denotes within
T8599 132-135 DT denotes the
T8600 136-141 NN denotes IRF-4
T8601 142-150 NN denotes promoter
T8602 150-151 -COMMA- denotes ,
T8603 152-154 PRP denotes we
T8604 155-162 VB denotes treated
T8605 163-166 NN denotes DNA
T8606 167-169 IN denotes of
T8607 170-176 NN denotes Jurkat
T8608 176-177 -COMMA- denotes ,
T8609 178-184 NN denotes CML-T1
T8610 184-185 -COMMA- denotes ,
T8611 186-191 NN denotes U-937
T8612 191-192 -COMMA- denotes ,
T8613 193-198 NN denotes K-562
T8614 199-202 CC denotes and
T8615 203-207 NN denotes EM-2
T8616 208-213 NN denotes cells
T8617 214-216 RB denotes as
T8618 217-221 RB denotes well
T8619 222-224 IN denotes as
T8620 225-227 IN denotes of
T8621 228-232 NN denotes SD-1
T8622 232-233 -COMMA- denotes ,
T8623 234-243 NN denotes RPMI-8226
T8624 244-247 CC denotes and
T8625 248-254 NN denotes BV-173
T8626 255-262 NN denotes control
T8627 263-268 NN denotes cells
T8628 269-273 IN denotes with
T8629 274-283 NN denotes bisulfite
T8630 283-284 -COMMA- denotes ,
T8631 285-290 WDT denotes which
T8632 291-301 RB denotes chemically
T8633 302-310 VB denotes converts
T8634 311-323 JJ denotes unmethylated
T8635 324-332 NN denotes cytosine
T8636 333-335 TO denotes to
T8637 336-342 NN denotes uracil
T8638 342-343 -COMMA- denotes ,
T8639 344-351 IN denotes whereas
T8640 352-354 PRP denotes it
T8641 355-358 VB denotes has
T8642 359-361 DT denotes no
T8643 362-368 NN denotes effect
T8644 369-371 IN denotes on
T8645 372-382 VB denotes methylated
T8646 383-391 NN denotes cytosine
T8647 391-392 -COMMA- denotes ,
T8648 393-397 FW denotes i.e.
T8649 398-400 IN denotes in
T8650 401-404 NN denotes CpG
T8651 405-406 -LRB- denotes (
T8652 406-408 CD denotes 34
T8653 408-409 -RRB- denotes )
T8654 411-415 DT denotes This
T8655 416-425 NN denotes technique
T8656 426-428 VB denotes is
T8657 429-439 RB denotes especially
T8658 440-446 JJ denotes useful
T8659 447-450 IN denotes for
T8660 451-460 NN denotes detection
T8661 461-463 IN denotes of
T8662 464-471 JJ denotes unknown
T8663 472-483 NN denotes methylation
T8664 484-492 NN denotes patterns
T8665 494-497 NN denotes PCR
T8666 498-511 NN denotes amplification
T8667 511-512 -COMMA- denotes ,
T8668 513-520 NN denotes cloning
T8669 521-524 CC denotes and
T8670 525-535 NN denotes sequencing
T8671 536-538 IN denotes of
T8672 539-542 DT denotes the
T8673 543-560 JJ denotes bisulfite-treated
T8674 561-564 NN denotes DNA
T8675 565-571 VB denotes showed
T8676 572-573 DT denotes a
T8677 574-582 JJ denotes specific
T8678 583-594 NN denotes methylation
T8679 595-602 NN denotes pattern
T8680 603-605 IN denotes of
T8681 606-609 DT denotes the
T8682 610-618 VB denotes analyzed
T8683 619-621 CD denotes 62
T8684 622-625 NN denotes CpG
T8685 626-631 NN denotes sites
T8686 632-634 IN denotes in
T8687 635-638 DT denotes all
T8688 639-643 NN denotes cell
T8689 644-649 NN denotes lines
T8690 650-651 -LRB- denotes (
T8691 651-657 NN denotes Figure
T8692 658-659 CD denotes 4
T8693 660-663 CC denotes and
T8694 664-669 NN denotes Table
T8695 670-671 CD denotes 1
T8696 671-672 -RRB- denotes )
T8697 674-676 IN denotes In
T8698 677-684 JJ denotes general
T8699 684-685 -COMMA- denotes ,
T8700 686-689 DT denotes the
T8701 690-703 JJ denotes methylational
T8702 704-710 NN denotes status
T8703 711-717 VB denotes ranged
T8704 718-722 IN denotes from
T8705 723-726 CD denotes one
T8706 727-731 NN denotes cell
T8707 732-736 NN denotes line
T8708 737-741 IN denotes with
T8709 742-743 DT denotes a
T8710 744-750 RB denotes nearly
T8711 751-765 JJ denotes non-methylated
T8712 766-771 NN denotes IRF-4
T8713 772-780 NN denotes promoter
T8714 781-782 -LRB- denotes (
T8715 782-786 NN denotes SD-1
T8716 786-787 -COMMA- denotes ,
T8717 788-802 JJ denotes IRF-4-positive
T8718 802-803 -RRB- denotes )
T8719 804-806 TO denotes to
T8720 807-808 DT denotes a
T8721 809-819 RB denotes completely
T8722 820-830 VB denotes methylated
T8723 831-836 NN denotes IRF-4
T8724 837-845 NN denotes promoter
T8725 846-848 IN denotes in
T8726 849-855 NN denotes CML-T1
T8727 856-857 -LRB- denotes (
T8728 857-871 JJ denotes IRF-4-negative
T8729 871-872 -RRB- denotes )
T8730 874-887 RB denotes Interestingly
T8731 887-888 -COMMA- denotes ,
T8732 889-892 DT denotes the
T8733 893-903 NN denotes percentage
T8734 904-906 IN denotes of
T8735 907-910 NN denotes CpG
T8736 911-922 NN denotes methylation
T8737 923-925 IN denotes in
T8738 926-929 DT denotes the
T8739 930-935 NN denotes IRF-4
T8740 936-944 NN denotes promoter
T8741 945-949 IN denotes from
T8742 950-964 JJ denotes IRF-4-positive
T8743 965-970 NN denotes cells
T8744 971-974 VB denotes was
T8745 975-979 RB denotes very
T8746 980-983 JJ denotes low
T8747 984-985 -LRB- denotes (
T8748 985-989 NN denotes mean
T8749 990-992 CD denotes 24
T8750 992-993 NN denotes %
T8751 993-994 -RRB- denotes )
T8752 995-997 IN denotes as
T8753 998-1006 VB denotes compared
T8754 1007-1011 IN denotes with
T8755 1012-1026 JJ denotes IRF-4-negative
T8756 1027-1032 NN denotes cells
T8757 1033-1034 -LRB- denotes (
T8758 1034-1038 NN denotes mean
T8759 1039-1041 CD denotes 94
T8760 1041-1042 NN denotes %
T8761 1042-1043 -RRB- denotes )
T8762 1044-1045 -LRB- denotes (
T8763 1045-1051 NN denotes Figure
T8764 1052-1054 NN denotes 4A
T8765 1055-1058 CC denotes and
T8766 1059-1064 JJ denotes Table
T8767 1065-1066 CD denotes 1
T8768 1066-1067 -RRB- denotes )
T8769 1069-1070 DT denotes A
T8770 1071-1080 NN denotes 5′-region
T8771 1081-1082 -LRB- denotes (
T8772 1082-1084 NN denotes R1
T8773 1084-1085 -RRB- denotes )
T8774 1086-1090 IN denotes with
T8775 1091-1093 CD denotes 13
T8776 1094-1109 VB denotes hypermethylated
T8777 1110-1113 NN denotes CpG
T8778 1114-1119 NN denotes sites
T8779 1120-1121 -LRB- denotes (
T8780 1121-1125 JJ denotes mean
T8781 1126-1132 NN denotes number
T8782 1133-1135 IN denotes of
T8783 1136-1146 VB denotes methylated
T8784 1147-1153 NN denotes clones
T8785 1154-1157 CD denotes 5.5
T8786 1158-1160 IN denotes of
T8787 1161-1162 CD denotes 8
T8788 1163-1167 IN denotes with
T8789 1168-1170 CD denotes 77
T8790 1170-1171 NN denotes %
T8791 1172-1182 VB denotes methylated
T8792 1183-1187 NN denotes CpGs
T8793 1187-1188 -RRB- denotes )
T8794 1189-1192 VB denotes was
T8795 1193-1198 VB denotes found
T8796 1199-1201 IN denotes in
T8797 1202-1206 JJ denotes most
T8798 1207-1212 NN denotes cells
T8799 1213-1214 -LRB- denotes (
T8800 1214-1220 IN denotes except
T8801 1221-1225 NN denotes SD-1
T8802 1226-1229 CC denotes and
T8803 1230-1239 NN denotes RPMI-8226
T8804 1239-1240 -RRB- denotes )
T8805 1241-1244 CC denotes and
T8806 1245-1246 DT denotes a
T8807 1247-1256 NN denotes 3′-region
T8808 1257-1258 -LRB- denotes (
T8809 1258-1260 NN denotes R3
T8810 1260-1261 -RRB- denotes )
T8811 1262-1264 IN denotes of
T8812 1265-1266 CD denotes 6
T8813 1267-1281 VB denotes hypomethylated
T8814 1282-1285 NN denotes CpG
T8815 1286-1291 NN denotes sites
T8816 1292-1293 -LRB- denotes (
T8817 1293-1297 JJ denotes mean
T8818 1298-1304 NN denotes number
T8819 1305-1307 IN denotes of
T8820 1308-1318 VB denotes methylated
T8821 1319-1325 NN denotes clones
T8822 1326-1329 CD denotes 1.7
T8823 1330-1332 IN denotes of
T8824 1333-1334 CD denotes 8
T8825 1335-1339 IN denotes with
T8826 1340-1342 CD denotes 33
T8827 1342-1343 NN denotes %
T8828 1344-1354 VB denotes methylated
T8829 1355-1359 NN denotes CpGs
T8830 1359-1360 -RRB- denotes )
T8831 1361-1364 VB denotes was
T8832 1365-1370 VB denotes found
T8833 1371-1373 IN denotes in
T8834 1374-1378 JJ denotes most
T8835 1379-1384 NN denotes cells
T8836 1385-1386 -LRB- denotes (
T8837 1386-1392 IN denotes except
T8838 1393-1399 NN denotes CML-T1
T8839 1400-1403 CC denotes and
T8840 1404-1409 NN denotes U-937
T8841 1409-1410 -RRB- denotes )
T8842 1411-1412 -LRB- denotes (
T8843 1412-1418 NN denotes Figure
T8844 1419-1421 NN denotes 4A
T8845 1422-1425 CC denotes and
T8846 1426-1431 JJ denotes Table
T8847 1432-1433 CD denotes 1
T8848 1433-1434 -RRB- denotes )
T8849 1436-1448 RB denotes Intriguingly
T8850 1448-1449 -COMMA- denotes ,
T8851 1450-1451 DT denotes a
T8852 1452-1459 NN denotes stretch
T8853 1460-1462 IN denotes of
T8854 1463-1465 CD denotes 13
T8855 1466-1469 NN denotes CpG
T8856 1470-1475 NN denotes sites
T8857 1476-1477 -LRB- denotes (
T8858 1477-1478 -SHARP- denotes #
T8859 1478-1483 CD denotes 10–22
T8860 1483-1484 -COLON- denotes ;
T8861 1485-1487 NN denotes R2
T8862 1487-1488 -RRB- denotes )
T8863 1489-1492 VB denotes was
T8864 1493-1501 VB denotes detected
T8865 1502-1504 IN denotes in
T8866 1505-1512 IN denotes between
T8867 1513-1518 DT denotes these
T8868 1519-1526 NN denotes regions
T8869 1526-1527 -COMMA- denotes ,
T8870 1528-1533 WDT denotes which
T8871 1534-1538 VB denotes were
T8872 1539-1545 RB denotes highly
T8873 1546-1556 VB denotes methylated
T8874 1557-1559 IN denotes in
T8875 1560-1574 JJ denotes IRF-4-negative
T8876 1575-1576 -LRB- denotes (
T8877 1576-1580 JJ denotes mean
T8878 1581-1587 NN denotes number
T8879 1588-1590 IN denotes of
T8880 1591-1601 VB denotes methylated
T8881 1602-1608 NN denotes clones
T8882 1609-1612 CD denotes 7.1
T8883 1613-1615 IN denotes of
T8884 1616-1617 CD denotes 8
T8885 1618-1622 IN denotes with
T8886 1623-1625 CD denotes 89
T8887 1625-1626 NN denotes %
T8888 1627-1637 VB denotes methylated
T8889 1638-1642 NN denotes CpGs
T8890 1642-1643 -RRB- denotes )
T8891 1644-1647 CC denotes but
T8892 1648-1655 RB denotes totally
T8893 1656-1670 JJ denotes non-methylated
T8894 1671-1673 IN denotes in
T8895 1674-1688 JJ denotes IRF-4-positive
T8896 1689-1694 NN denotes cells
T8897 1695-1696 -LRB- denotes (
T8898 1696-1702 NN denotes Figure
T8899 1703-1705 NN denotes 4A
T8900 1706-1709 CC denotes and
T8901 1710-1711 NN denotes B
T8902 1711-1712 -RRB- denotes )
T8903 1714-1725 RB denotes Furthermore
T8904 1725-1726 -COMMA- denotes ,
T8905 1727-1732 CD denotes three
T8906 1733-1736 NN denotes CpG
T8907 1737-1742 NN denotes sites
T8908 1743-1745 IN denotes at
T8909 1746-1749 DT denotes the
T8910 1750-1752 NN denotes 5′
T8911 1753-1756 NN denotes end
T8912 1757-1758 -LRB- denotes (
T8913 1758-1759 -SHARP- denotes #
T8914 1759-1761 CD denotes 54
T8915 1761-1762 -COMMA- denotes ,
T8916 1763-1765 CD denotes 56
T8917 1765-1766 -COMMA- denotes ,
T8918 1767-1769 CD denotes 58
T8919 1769-1770 -RRB- denotes )
T8920 1771-1774 CC denotes and
T8921 1775-1778 CD denotes two
T8922 1779-1782 NN denotes CpG
T8923 1783-1789 NN denotes motifs
T8924 1790-1792 IN denotes at
T8925 1793-1796 DT denotes the
T8926 1797-1799 NN denotes 3′
T8927 1800-1803 NN denotes end
T8928 1804-1805 -LRB- denotes (
T8929 1805-1806 -SHARP- denotes #
T8930 1806-1807 CD denotes 1
T8931 1807-1808 -COMMA- denotes ,
T8932 1809-1810 CD denotes 2
T8933 1810-1811 -RRB- denotes )
T8934 1812-1818 VB denotes showed
T8935 1819-1823 DT denotes this
T8936 1824-1830 JJ denotes direct
T8937 1831-1842 NN denotes correlation
T8938 1843-1850 IN denotes between
T8939 1851-1855 JJ denotes high
T8940 1856-1867 NN denotes methylation
T8941 1868-1874 NN denotes status
T8942 1875-1878 CC denotes and
T8943 1879-1886 NN denotes absence
T8944 1887-1889 IN denotes of
T8945 1890-1895 NN denotes IRF-4
T8946 1896-1906 NN denotes expression
T8947 1908-1910 IN denotes In
T8948 1911-1919 NN denotes addition
T8949 1919-1920 -COMMA- denotes ,
T8950 1921-1924 CD denotes two
T8951 1925-1928 NN denotes CpG
T8952 1929-1934 NN denotes sites
T8953 1935-1942 JJ denotes located
T8954 1943-1945 IN denotes in
T8955 1946-1947 DT denotes a
T8956 1948-1952 NN denotes NFκB
T8957 1953-1954 -LRB- denotes (
T8958 1954-1955 -SHARP- denotes #
T8959 1955-1957 CD denotes 48
T8960 1957-1958 -RRB- denotes )
T8961 1959-1962 CC denotes and
T8962 1963-1964 DT denotes a
T8963 1965-1968 NN denotes SP1
T8964 1969-1976 NN denotes element
T8965 1977-1978 -LRB- denotes (
T8966 1978-1979 -SHARP- denotes #
T8967 1979-1981 CD denotes 45
T8968 1981-1982 -RRB- denotes )
T8969 1983-1986 VB denotes are
T8970 1987-1991 RB denotes less
T8971 1992-2002 VB denotes methylated
T8972 2003-2005 IN denotes in
T8973 2006-2020 JJ denotes IRF-4-positive
T8974 2021-2025 IN denotes than
T8975 2026-2028 IN denotes in
T8976 2029-2043 JJ denotes IRF-4-negative
T8977 2044-2049 NN denotes cells
T8978 2050-2051 -LRB- denotes (
T8979 2051-2055 JJ denotes mean
T8980 2056-2062 NN denotes number
T8981 2063-2065 IN denotes of
T8982 2066-2076 VB denotes methylated
T8983 2077-2083 NN denotes clones
T8984 2083-2084 -COLON- denotes :
T8985 2085-2088 CD denotes 1/8
T8986 2089-2095 CC denotes versus
T8987 2096-2099 CD denotes 8/8
T8988 2099-2100 -RRB- denotes )
T8989 2102-2107 DT denotes These
T8990 2108-2115 NN denotes results
T8991 2116-2124 VB denotes indicate
T8992 2125-2128 DT denotes the
T8993 2129-2140 NN denotes involvement
T8994 2141-2143 IN denotes of
T8995 2144-2147 NN denotes CpG
T8996 2148-2159 NN denotes methylation
T8997 2160-2162 IN denotes in
T8998 2163-2166 DT denotes the
T8999 2167-2177 NN denotes regulation
T9000 2178-2180 IN denotes of
T9001 2181-2186 NN denotes IRF-4
T9002 2187-2197 NN denotes expression
T9003 2198-2200 IN denotes in
T9004 2201-2209 JJ denotes leukemic
T9005 2210-2215 NN denotes cells
R7082 T8580 T8578 arg1Of sites,Specific
R7083 T8580 T8579 arg1Of sites,CpG
R7084 T8580 T8581 arg1Of sites,in
R7085 T8580 T8585 arg1Of sites,are
R7086 T8580 T8586 arg2Of sites,methylated
R7087 T8584 T8581 arg2Of promoter,in
R7088 T8584 T8582 arg1Of promoter,the
R7089 T8584 T8583 arg1Of promoter,IRF-4
R7090 T8586 T8585 arg2Of methylated,are
R7091 T8586 T8587 arg1Of methylated,in
R7092 T8589 T8587 arg2Of cells,in
R7093 T8589 T8588 arg1Of cells,hematopoietic
R7094 T8591 T8590 arg2Of order,In
R7095 T8594 T8590 arg3Of map,In
R7096 T8594 T8592 arg1Of map,to
R7097 T8594 T8593 arg1Of map,exactly
R7098 T8597 T8594 arg2Of sites,map
R7099 T8597 T8595 arg1Of sites,the
R7100 T8597 T8596 arg1Of sites,methylation
R7101 T8597 T8598 arg1Of sites,within
R7102 T8601 T8598 arg2Of promoter,within
R7103 T8601 T8599 arg1Of promoter,the
R7104 T8601 T8600 arg1Of promoter,IRF-4
R7105 T8603 T8594 arg1Of we,map
R7106 T8603 T8604 arg1Of we,treated
R7107 T8604 T8590 arg1Of treated,In
R7108 T8604 T8602 arg1Of treated,","
R7109 T8604 T8638 arg1Of treated,","
R7110 T8604 T8639 arg1Of treated,whereas
R7111 T8605 T8604 arg2Of DNA,treated
R7112 T8605 T8606 arg1Of DNA,of
R7113 T8605 T8620 arg1Of DNA,of
R7114 T8606 T8619 arg1Of of,as
R7115 T8607 T8608 arg1Of Jurkat,","
R7116 T8608 T8610 arg1Of ",",","
R7117 T8609 T8608 arg2Of CML-T1,","
R7118 T8610 T8612 arg1Of ",",","
R7119 T8611 T8610 arg2Of U-937,","
R7120 T8612 T8614 arg1Of ",",and
R7121 T8613 T8612 arg2Of K-562,","
R7122 T8615 T8614 arg2Of EM-2,and
R7123 T8616 T8606 arg2Of cells,of
R7124 T8616 T8607 arg1Of cells,Jurkat
R7125 T8616 T8609 arg1Of cells,CML-T1
R7126 T8616 T8611 arg1Of cells,U-937
R7127 T8616 T8613 arg1Of cells,K-562
R7128 T8616 T8615 arg1Of cells,EM-2
R7129 T8619 T8617 arg1Of as,as
R7130 T8619 T8618 arg1Of as,well
R7131 T8620 T8619 arg2Of of,as
R7132 T8621 T8622 arg1Of SD-1,","
R7133 T8622 T8624 arg1Of ",",and
R7134 T8623 T8622 arg2Of RPMI-8226,","
R7135 T8624 T8620 arg2Of and,of
R7136 T8624 T8628 arg1Of and,with
R7137 T8624 T8630 arg1Of and,","
R7138 T8624 T8631 arg1Of and,which
R7139 T8624 T8633 arg1Of and,converts
R7140 T8627 T8624 arg2Of cells,and
R7141 T8627 T8625 arg1Of cells,BV-173
R7142 T8627 T8626 arg1Of cells,control
R7143 T8629 T8628 arg2Of bisulfite,with
R7144 T8633 T8632 arg1Of converts,chemically
R7145 T8633 T8636 arg1Of converts,to
R7146 T8635 T8633 arg2Of cytosine,converts
R7147 T8635 T8634 arg1Of cytosine,unmethylated
R7148 T8637 T8636 arg2Of uracil,to
R7149 T8640 T8641 arg1Of it,has
R7150 T8641 T8639 arg2Of has,whereas
R7151 T8641 T8644 arg1Of has,on
R7152 T8641 T8647 arg1Of has,","
R7153 T8641 T8648 arg1Of has,i.e.
R7154 T8641 T8649 arg1Of has,in
R7155 T8643 T8641 arg2Of effect,has
R7156 T8643 T8642 arg1Of effect,no
R7157 T8646 T8644 arg2Of cytosine,on
R7158 T8646 T8645 arg2Of cytosine,methylated
R7159 T8650 T8649 arg2Of CpG,in
R7160 T8650 T8651 arg1Of CpG,(
R7161 T8652 T8651 arg2Of 34,(
R7162 T8653 T8651 arg3Of ),(
R7163 T8655 T8654 arg1Of technique,This
R7164 T8655 T8656 arg1Of technique,is
R7165 T8655 T8658 arg1Of technique,useful
R7166 T8658 T8656 arg2Of useful,is
R7167 T8658 T8657 arg1Of useful,especially
R7168 T8658 T8659 arg1Of useful,for
R7169 T8660 T8659 arg2Of detection,for
R7170 T8660 T8661 arg1Of detection,of
R7171 T8664 T8661 arg2Of patterns,of
R7172 T8664 T8662 arg1Of patterns,unknown
R7173 T8664 T8663 arg1Of patterns,methylation
R7174 T8666 T8665 arg1Of amplification,PCR
R7175 T8666 T8667 arg1Of amplification,","
R7176 T8667 T8669 arg1Of ",",and
R7177 T8668 T8667 arg2Of cloning,","
R7178 T8669 T8671 arg1Of and,of
R7179 T8669 T8675 arg1Of and,showed
R7180 T8670 T8669 arg2Of sequencing,and
R7181 T8674 T8671 arg2Of DNA,of
R7182 T8674 T8672 arg1Of DNA,the
R7183 T8674 T8673 arg1Of DNA,bisulfite-treated
R7184 T8679 T8675 arg2Of pattern,showed
R7185 T8679 T8676 arg1Of pattern,a
R7186 T8679 T8677 arg1Of pattern,specific
R7187 T8679 T8678 arg1Of pattern,methylation
R7188 T8679 T8680 arg1Of pattern,of
R7189 T8679 T8686 arg1Of pattern,in
R7190 T8685 T8680 arg2Of sites,of
R7191 T8685 T8681 arg1Of sites,the
R7192 T8685 T8682 arg2Of sites,analyzed
R7193 T8685 T8683 arg1Of sites,62
R7194 T8685 T8684 arg1Of sites,CpG
R7195 T8689 T8686 arg2Of lines,in
R7196 T8689 T8687 arg1Of lines,all
R7197 T8689 T8688 arg1Of lines,cell
R7198 T8689 T8690 arg1Of lines,(
R7199 T8691 T8692 arg1Of Figure,4
R7200 T8691 T8693 arg1Of Figure,and
R7201 T8693 T8690 arg2Of and,(
R7202 T8694 T8693 arg2Of Table,and
R7203 T8694 T8695 arg1Of Table,1
R7204 T8696 T8690 arg3Of ),(
R7205 T8698 T8697 arg2Of general,In
R7206 T8702 T8700 arg1Of status,the
R7207 T8702 T8701 arg1Of status,methylational
R7208 T8702 T8703 arg1Of status,ranged
R7209 T8703 T8697 arg1Of ranged,In
R7210 T8703 T8699 arg1Of ranged,","
R7211 T8703 T8704 arg1Of ranged,from
R7212 T8707 T8704 arg2Of line,from
R7213 T8707 T8705 arg1Of line,one
R7214 T8707 T8706 arg1Of line,cell
R7215 T8707 T8708 arg1Of line,with
R7216 T8711 T8710 arg1Of non-methylated,nearly
R7217 T8713 T8708 arg2Of promoter,with
R7218 T8713 T8709 arg1Of promoter,a
R7219 T8713 T8711 arg1Of promoter,non-methylated
R7220 T8713 T8712 arg1Of promoter,IRF-4
R7221 T8713 T8714 arg1Of promoter,(
R7222 T8713 T8719 arg1Of promoter,to
R7223 T8715 T8714 arg2Of SD-1,(
R7224 T8715 T8716 arg1Of SD-1,","
R7225 T8717 T8716 arg2Of IRF-4-positive,","
R7226 T8718 T8714 arg3Of ),(
R7227 T8722 T8721 arg1Of methylated,completely
R7228 T8724 T8719 arg2Of promoter,to
R7229 T8724 T8720 arg1Of promoter,a
R7230 T8724 T8722 arg1Of promoter,methylated
R7231 T8724 T8723 arg1Of promoter,IRF-4
R7232 T8724 T8725 arg1Of promoter,in
R7233 T8726 T8725 arg2Of CML-T1,in
R7234 T8726 T8727 arg1Of CML-T1,(
R7235 T8728 T8727 arg2Of IRF-4-negative,(
R7236 T8729 T8727 arg3Of ),(
R7237 T8733 T8732 arg1Of percentage,the
R7238 T8733 T8734 arg1Of percentage,of
R7239 T8733 T8737 arg1Of percentage,in
R7240 T8733 T8744 arg1Of percentage,was
R7241 T8733 T8746 arg1Of percentage,low
R7242 T8736 T8734 arg2Of methylation,of
R7243 T8736 T8735 arg1Of methylation,CpG
R7244 T8740 T8737 arg2Of promoter,in
R7245 T8740 T8738 arg1Of promoter,the
R7246 T8740 T8739 arg1Of promoter,IRF-4
R7247 T8740 T8741 arg1Of promoter,from
R7248 T8743 T8741 arg2Of cells,from
R7249 T8743 T8742 arg1Of cells,IRF-4-positive
R7250 T8744 T8730 arg1Of was,Interestingly
R7251 T8744 T8731 arg1Of was,","
R7252 T8746 T8744 arg2Of low,was
R7253 T8746 T8745 arg1Of low,very
R7254 T8746 T8747 arg1Of low,(
R7255 T8750 T8747 arg2Of %,(
R7256 T8750 T8748 arg1Of %,mean
R7257 T8750 T8749 arg1Of %,24
R7258 T8751 T8747 arg3Of ),(
R7259 T8752 T8744 arg3Of as,was
R7260 T8753 T8752 arg2Of compared,as
R7261 T8753 T8754 arg1Of compared,with
R7262 T8756 T8754 arg2Of cells,with
R7263 T8756 T8755 arg1Of cells,IRF-4-negative
R7264 T8756 T8757 arg1Of cells,(
R7265 T8756 T8762 arg1Of cells,(
R7266 T8760 T8757 arg2Of %,(
R7267 T8760 T8758 arg1Of %,mean
R7268 T8760 T8759 arg1Of %,94
R7269 T8761 T8757 arg3Of ),(
R7270 T8764 T8763 arg1Of 4A,Figure
R7271 T8764 T8765 arg1Of 4A,and
R7272 T8765 T8762 arg2Of and,(
R7273 T8767 T8765 arg2Of 1,and
R7274 T8767 T8766 arg1Of 1,Table
R7275 T8768 T8762 arg3Of ),(
R7276 T8770 T8769 arg1Of 5′-region,A
R7277 T8770 T8771 arg1Of 5′-region,(
R7278 T8770 T8774 arg1Of 5′-region,with
R7279 T8770 T8794 arg1Of 5′-region,was
R7280 T8770 T8795 arg2Of 5′-region,found
R7281 T8772 T8771 arg2Of R1,(
R7282 T8773 T8771 arg3Of ),(
R7283 T8778 T8774 arg2Of sites,with
R7284 T8778 T8775 arg1Of sites,13
R7285 T8778 T8776 arg2Of sites,hypermethylated
R7286 T8778 T8777 arg1Of sites,CpG
R7287 T8778 T8779 arg1Of sites,(
R7288 T8781 T8779 arg2Of number,(
R7289 T8781 T8780 arg1Of number,mean
R7290 T8781 T8782 arg1Of number,of
R7291 T8781 T8785 arg1Of number,5.5
R7292 T8784 T8782 arg2Of clones,of
R7293 T8784 T8783 arg2Of clones,methylated
R7294 T8785 T8786 arg1Of 5.5,of
R7295 T8785 T8788 arg1Of 5.5,with
R7296 T8787 T8786 arg2Of 8,of
R7297 T8789 T8790 arg1Of 77,%
R7298 T8792 T8788 arg2Of CpGs,with
R7299 T8792 T8789 arg1Of CpGs,77
R7300 T8792 T8791 arg2Of CpGs,methylated
R7301 T8793 T8779 arg3Of ),(
R7302 T8795 T8794 arg2Of found,was
R7303 T8795 T8796 arg1Of found,in
R7304 T8795 T8799 arg1Of found,(
R7305 T8795 T8805 arg1Of found,and
R7306 T8798 T8796 arg2Of cells,in
R7307 T8798 T8797 arg1Of cells,most
R7308 T8800 T8799 arg2Of except,(
R7309 T8801 T8802 arg1Of SD-1,and
R7310 T8802 T8800 arg2Of and,except
R7311 T8803 T8802 arg2Of RPMI-8226,and
R7312 T8804 T8799 arg3Of ),(
R7313 T8807 T8806 arg1Of 3′-region,a
R7314 T8807 T8808 arg1Of 3′-region,(
R7315 T8807 T8811 arg1Of 3′-region,of
R7316 T8807 T8831 arg1Of 3′-region,was
R7317 T8807 T8832 arg2Of 3′-region,found
R7318 T8809 T8808 arg2Of R3,(
R7319 T8810 T8808 arg3Of ),(
R7320 T8815 T8811 arg2Of sites,of
R7321 T8815 T8812 arg1Of sites,6
R7322 T8815 T8813 arg2Of sites,hypomethylated
R7323 T8815 T8814 arg1Of sites,CpG
R7324 T8815 T8816 arg1Of sites,(
R7325 T8818 T8816 arg2Of number,(
R7326 T8818 T8817 arg1Of number,mean
R7327 T8818 T8819 arg1Of number,of
R7328 T8818 T8822 arg1Of number,1.7
R7329 T8821 T8819 arg2Of clones,of
R7330 T8821 T8820 arg2Of clones,methylated
R7331 T8822 T8823 arg1Of 1.7,of
R7332 T8822 T8825 arg1Of 1.7,with
R7333 T8824 T8823 arg2Of 8,of
R7334 T8826 T8827 arg1Of 33,%
R7335 T8829 T8825 arg2Of CpGs,with
R7336 T8829 T8826 arg1Of CpGs,33
R7337 T8829 T8828 arg2Of CpGs,methylated
R7338 T8830 T8816 arg3Of ),(
R7339 T8832 T8805 arg2Of found,and
R7340 T8832 T8831 arg2Of found,was
R7341 T8832 T8833 arg1Of found,in
R7342 T8835 T8833 arg2Of cells,in
R7343 T8835 T8834 arg1Of cells,most
R7344 T8835 T8836 arg1Of cells,(
R7345 T8835 T8842 arg1Of cells,(
R7346 T8837 T8836 arg2Of except,(
R7347 T8838 T8839 arg1Of CML-T1,and
R7348 T8839 T8837 arg2Of and,except
R7349 T8840 T8839 arg2Of U-937,and
R7350 T8841 T8836 arg3Of ),(
R7351 T8844 T8843 arg1Of 4A,Figure
R7352 T8844 T8845 arg1Of 4A,and
R7353 T8845 T8842 arg2Of and,(
R7354 T8847 T8845 arg2Of 1,and
R7355 T8847 T8846 arg1Of 1,Table
R7356 T8848 T8842 arg3Of ),(
R7357 T8852 T8851 arg1Of stretch,a
R7358 T8852 T8853 arg1Of stretch,of
R7359 T8852 T8863 arg1Of stretch,was
R7360 T8852 T8864 arg2Of stretch,detected
R7361 T8856 T8853 arg2Of sites,of
R7362 T8856 T8854 arg1Of sites,13
R7363 T8856 T8855 arg1Of sites,CpG
R7364 T8856 T8857 arg1Of sites,(
R7365 T8859 T8857 arg2Of 10–22,(
R7366 T8859 T8858 arg1Of 10–22,#
R7367 T8859 T8860 arg1Of 10–22,;
R7368 T8861 T8860 arg2Of R2,;
R7369 T8862 T8857 arg3Of ),(
R7370 T8864 T8849 arg1Of detected,Intriguingly
R7371 T8864 T8850 arg1Of detected,","
R7372 T8864 T8863 arg2Of detected,was
R7373 T8864 T8865 arg1Of detected,in
R7374 T8864 T8866 arg1Of detected,between
R7375 T8868 T8866 arg2Of regions,between
R7376 T8868 T8867 arg1Of regions,these
R7377 T8868 T8869 arg1Of regions,","
R7378 T8868 T8870 arg1Of regions,which
R7379 T8868 T8871 arg1Of regions,were
R7380 T8868 T8873 arg2Of regions,methylated
R7381 T8868 T8893 arg1Of regions,non-methylated
R7382 T8873 T8872 arg1Of methylated,highly
R7383 T8873 T8874 arg1Of methylated,in
R7384 T8873 T8891 arg1Of methylated,but
R7385 T8875 T8874 arg2Of IRF-4-negative,in
R7386 T8875 T8876 arg1Of IRF-4-negative,(
R7387 T8878 T8876 arg2Of number,(
R7388 T8878 T8877 arg1Of number,mean
R7389 T8878 T8879 arg1Of number,of
R7390 T8878 T8882 arg1Of number,7.1
R7391 T8881 T8879 arg2Of clones,of
R7392 T8881 T8880 arg2Of clones,methylated
R7393 T8882 T8883 arg1Of 7.1,of
R7394 T8882 T8885 arg1Of 7.1,with
R7395 T8884 T8883 arg2Of 8,of
R7396 T8886 T8887 arg1Of 89,%
R7397 T8889 T8885 arg2Of CpGs,with
R7398 T8889 T8886 arg1Of CpGs,89
R7399 T8889 T8888 arg2Of CpGs,methylated
R7400 T8890 T8876 arg3Of ),(
R7401 T8891 T8871 arg2Of but,were
R7402 T8893 T8891 arg2Of non-methylated,but
R7403 T8893 T8892 arg1Of non-methylated,totally
R7404 T8893 T8894 arg1Of non-methylated,in
R7405 T8896 T8894 arg2Of cells,in
R7406 T8896 T8895 arg1Of cells,IRF-4-positive
R7407 T8896 T8897 arg1Of cells,(
R7408 T8899 T8898 arg1Of 4A,Figure
R7409 T8899 T8900 arg1Of 4A,and
R7410 T8900 T8897 arg2Of and,(
R7411 T8901 T8900 arg2Of B,and
R7412 T8902 T8897 arg3Of ),(
R7413 T8907 T8905 arg1Of sites,three
R7414 T8907 T8906 arg1Of sites,CpG
R7415 T8907 T8908 arg1Of sites,at
R7416 T8907 T8912 arg1Of sites,(
R7417 T8907 T8920 arg1Of sites,and
R7418 T8911 T8908 arg2Of end,at
R7419 T8911 T8909 arg1Of end,the
R7420 T8911 T8910 arg1Of end,5′
R7421 T8914 T8915 arg1Of 54,","
R7422 T8915 T8912 arg2Of ",",(
R7423 T8915 T8913 arg1Of ",",#
R7424 T8915 T8917 arg1Of ",",","
R7425 T8916 T8915 arg2Of 56,","
R7426 T8918 T8917 arg2Of 58,","
R7427 T8919 T8912 arg3Of ),(
R7428 T8920 T8924 arg1Of and,at
R7429 T8920 T8928 arg1Of and,(
R7430 T8920 T8934 arg1Of and,showed
R7431 T8923 T8920 arg2Of motifs,and
R7432 T8923 T8921 arg1Of motifs,two
R7433 T8923 T8922 arg1Of motifs,CpG
R7434 T8927 T8924 arg2Of end,at
R7435 T8927 T8925 arg1Of end,the
R7436 T8927 T8926 arg1Of end,3′
R7437 T8930 T8928 arg2Of 1,(
R7438 T8930 T8929 arg1Of 1,#
R7439 T8930 T8931 arg1Of 1,","
R7440 T8932 T8931 arg2Of 2,","
R7441 T8933 T8928 arg3Of ),(
R7442 T8934 T8903 arg1Of showed,Furthermore
R7443 T8934 T8904 arg1Of showed,","
R7444 T8937 T8934 arg2Of correlation,showed
R7445 T8937 T8935 arg1Of correlation,this
R7446 T8937 T8936 arg1Of correlation,direct
R7447 T8937 T8938 arg1Of correlation,between
R7448 T8941 T8939 arg1Of status,high
R7449 T8941 T8940 arg1Of status,methylation
R7450 T8941 T8942 arg1Of status,and
R7451 T8942 T8938 arg2Of and,between
R7452 T8943 T8942 arg2Of absence,and
R7453 T8943 T8944 arg1Of absence,of
R7454 T8946 T8944 arg2Of expression,of
R7455 T8946 T8945 arg1Of expression,IRF-4
R7456 T8948 T8947 arg2Of addition,In
R7457 T8952 T8950 arg1Of sites,two
R7458 T8952 T8951 arg1Of sites,CpG
R7459 T8952 T8953 arg1Of sites,located
R7460 T8952 T8969 arg1Of sites,are
R7461 T8952 T8971 arg1Of sites,methylated
R7462 T8953 T8954 arg1Of located,in
R7463 T8956 T8955 arg1Of NFκB,a
R7464 T8956 T8957 arg1Of NFκB,(
R7465 T8956 T8961 arg1Of NFκB,and
R7466 T8959 T8957 arg2Of 48,(
R7467 T8959 T8958 arg1Of 48,#
R7468 T8960 T8957 arg3Of ),(
R7469 T8961 T8954 arg2Of and,in
R7470 T8964 T8961 arg2Of element,and
R7471 T8964 T8962 arg1Of element,a
R7472 T8964 T8963 arg1Of element,SP1
R7473 T8964 T8965 arg1Of element,(
R7474 T8967 T8965 arg2Of 45,(
R7475 T8967 T8966 arg1Of 45,#
R7476 T8968 T8965 arg3Of ),(
R7477 T8969 T8947 arg1Of are,In
R7478 T8969 T8949 arg1Of are,","
R7479 T8971 T8969 arg2Of methylated,are
R7480 T8971 T8970 arg1Of methylated,less
R7481 T8971 T8972 arg1Of methylated,in
R7482 T8971 T8974 arg1Of methylated,than
R7483 T8973 T8972 arg2Of IRF-4-positive,in
R7484 T8975 T8974 arg2Of in,than
R7485 T8980 T8975 arg2Of number,in
R7486 T8980 T8976 arg1Of number,IRF-4-negative
R7487 T8980 T8977 arg1Of number,cells
R7488 T8980 T8978 arg1Of number,(
R7489 T8980 T8979 arg1Of number,mean
R7490 T8980 T8981 arg1Of number,of
R7491 T8983 T8981 arg2Of clones,of
R7492 T8983 T8982 arg2Of clones,methylated
R7493 T8983 T8984 arg1Of clones,:
R7494 T8985 T8986 arg1Of 1/8,versus
R7495 T8986 T8988 arg1Of versus,)
R7496 T8987 T8986 arg2Of 8/8,versus
R7497 T8990 T8989 arg1Of results,These
R7498 T8990 T8991 arg1Of results,indicate
R7499 T8993 T8991 arg2Of involvement,indicate
R7500 T8993 T8992 arg1Of involvement,the
R7501 T8993 T8994 arg1Of involvement,of
R7502 T8993 T8997 arg1Of involvement,in
R7503 T8996 T8994 arg2Of methylation,of
R7504 T8996 T8995 arg1Of methylation,CpG
R7505 T8999 T8997 arg2Of regulation,in
R7506 T8999 T8998 arg1Of regulation,the
R7507 T8999 T9000 arg1Of regulation,of
R7508 T9002 T9000 arg2Of expression,of
R7509 T9002 T9001 arg1Of expression,IRF-4
R7510 T9002 T9003 arg1Of expression,in
R7511 T9005 T9003 arg2Of cells,in
R7512 T9005 T9004 arg1Of cells,leukemic

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T9022 0-8 JJ denotes Specific
T9023 9-12 NNP denotes CpG
T9024 13-18 NNS denotes sites
T9025 19-21 IN denotes in
T9026 22-25 DT denotes the
T9027 26-31 NN denotes IRF-4
T9028 32-40 NN denotes promoter
T9029 41-44 VBP denotes are
T9030 45-55 VBN denotes methylated
T9031 56-58 IN denotes in
T9032 59-72 JJ denotes hematopoietic
T9033 73-78 NNS denotes cells
T9034 79-81 IN denotes In
T9035 82-87 NN denotes order
T9036 88-90 TO denotes to
T9037 91-98 RB denotes exactly
T9038 99-102 VB denotes map
T9039 103-106 DT denotes the
T9040 107-118 NN denotes methylation
T9041 119-124 NNS denotes sites
T9042 125-131 IN denotes within
T9043 132-135 DT denotes the
T9044 136-141 NN denotes IRF-4
T9045 142-150 NN denotes promoter
T9046 150-151 , denotes ,
T9047 152-154 PRP denotes we
T9048 155-162 VBD denotes treated
T9049 163-166 NNP denotes DNA
T9050 167-169 IN denotes of
T9051 170-176 NNP denotes Jurkat
T9052 176-177 , denotes ,
T9053 178-184 NNP denotes CML-T1
T9054 184-185 , denotes ,
T9055 186-191 NNP denotes U-937
T9056 191-192 , denotes ,
T9057 193-198 NNP denotes K-562
T9058 199-202 CC denotes and
T9059 203-207 NNP denotes EM-2
T9060 208-213 NNS denotes cells
T9061 214-216 RB denotes as
T9062 217-221 RB denotes well
T9063 222-224 IN denotes as
T9064 225-227 IN denotes of
T9065 228-232 NN denotes SD-1
T9066 232-233 , denotes ,
T9067 234-243 NN denotes RPMI-8226
T9068 244-247 CC denotes and
T9069 248-254 NN denotes BV-173
T9070 255-262 NN denotes control
T9071 263-268 NNS denotes cells
T9072 269-273 IN denotes with
T9073 274-283 NN denotes bisulfite
T9074 283-284 , denotes ,
T9075 285-290 WDT denotes which
T9076 291-301 RB denotes chemically
T9077 302-310 VBZ denotes converts
T9078 311-323 JJ denotes unmethylated
T9079 324-332 NN denotes cytosine
T9080 333-335 TO denotes to
T9081 336-342 VB denotes uracil
T9082 342-343 , denotes ,
T9083 344-351 IN denotes whereas
T9084 352-354 PRP denotes it
T9085 355-358 VBZ denotes has
T9086 359-361 DT denotes no
T9087 362-368 NN denotes effect
T9088 369-371 IN denotes on
T9089 372-382 JJ denotes methylated
T9090 383-391 NN denotes cytosine
T9091 391-392 , denotes ,
T9092 393-397 FW denotes i.e.
T9093 398-400 IN denotes in
T9094 401-404 NNP denotes CpG
T9095 405-406 -LRB- denotes (
T9096 406-408 CD denotes 34
T9097 408-409 -RRB- denotes )
T9098 409-410 . denotes .
T9099 411-415 DT denotes This
T9100 416-425 NN denotes technique
T9101 426-428 VBZ denotes is
T9102 429-439 RB denotes especially
T9103 440-446 JJ denotes useful
T9104 447-450 IN denotes for
T9105 451-460 NN denotes detection
T9106 461-463 IN denotes of
T9107 464-471 JJ denotes unknown
T9108 472-483 NN denotes methylation
T9109 484-492 NNS denotes patterns
T9110 492-493 . denotes .
T9111 494-497 NNP denotes PCR
T9112 498-511 NN denotes amplification
T9113 511-512 , denotes ,
T9114 513-520 VBG denotes cloning
T9115 521-524 CC denotes and
T9116 525-535 VBG denotes sequencing
T9117 536-538 IN denotes of
T9118 539-542 DT denotes the
T9119 543-560 JJ denotes bisulfite-treated
T9120 561-564 NN denotes DNA
T9121 565-571 VBD denotes showed
T9122 572-573 DT denotes a
T9123 574-582 JJ denotes specific
T9124 583-594 NN denotes methylation
T9125 595-602 NN denotes pattern
T9126 603-605 IN denotes of
T9127 606-609 DT denotes the
T9128 610-618 VBN denotes analyzed
T9129 619-621 CD denotes 62
T9130 622-625 NNP denotes CpG
T9131 626-631 NNS denotes sites
T9132 632-634 IN denotes in
T9133 635-638 DT denotes all
T9134 639-643 NN denotes cell
T9135 644-649 NNS denotes lines
T9136 650-651 -LRB- denotes (
T9137 651-657 NN denotes Figure
T9138 658-659 CD denotes 4
T9139 660-663 CC denotes and
T9140 664-669 NNP denotes Table
T9141 670-671 CD denotes 1
T9142 671-672 -RRB- denotes )
T9143 672-673 . denotes .
T9144 674-676 IN denotes In
T9145 677-684 JJ denotes general
T9146 684-685 , denotes ,
T9147 686-689 DT denotes the
T9148 690-703 JJ denotes methylational
T9149 704-710 NN denotes status
T9150 711-717 VBD denotes ranged
T9151 718-722 IN denotes from
T9152 723-726 CD denotes one
T9153 727-731 NN denotes cell
T9154 732-736 NN denotes line
T9155 737-741 IN denotes with
T9156 742-743 DT denotes a
T9157 744-750 RB denotes nearly
T9158 751-765 JJ denotes non-methylated
T9159 766-771 NN denotes IRF-4
T9160 772-780 NN denotes promoter
T9161 781-782 -LRB- denotes (
T9162 782-786 NN denotes SD-1
T9163 786-787 , denotes ,
T9164 788-802 JJ denotes IRF-4-positive
T9165 802-803 -RRB- denotes )
T9166 804-806 TO denotes to
T9167 807-808 DT denotes a
T9168 809-819 RB denotes completely
T9169 820-830 VBN denotes methylated
T9170 831-836 NN denotes IRF-4
T9171 837-845 NN denotes promoter
T9172 846-848 IN denotes in
T9173 849-855 NNP denotes CML-T1
T9174 856-857 -LRB- denotes (
T9175 857-871 JJ denotes IRF-4-negative
T9176 871-872 -RRB- denotes )
T9177 872-873 . denotes .
T9178 874-887 RB denotes Interestingly
T9179 887-888 , denotes ,
T9180 889-892 DT denotes the
T9181 893-903 NN denotes percentage
T9182 904-906 IN denotes of
T9183 907-910 NNP denotes CpG
T9184 911-922 NN denotes methylation
T9185 923-925 IN denotes in
T9186 926-929 DT denotes the
T9187 930-935 NN denotes IRF-4
T9188 936-944 NN denotes promoter
T9189 945-949 IN denotes from
T9190 950-964 JJ denotes IRF-4-positive
T9191 965-970 NNS denotes cells
T9192 971-974 VBD denotes was
T9193 975-979 RB denotes very
T9194 980-983 JJ denotes low
T9195 984-985 -LRB- denotes (
T9196 985-989 JJ denotes mean
T9197 990-992 CD denotes 24
T9198 992-993 NN denotes %
T9199 993-994 -RRB- denotes )
T9200 995-997 IN denotes as
T9201 998-1006 VBN denotes compared
T9202 1007-1011 IN denotes with
T9203 1012-1026 JJ denotes IRF-4-negative
T9204 1027-1032 NNS denotes cells
T9205 1033-1034 -LRB- denotes (
T9206 1034-1038 VB denotes mean
T9207 1039-1041 CD denotes 94
T9208 1041-1042 NN denotes %
T9209 1042-1043 -RRB- denotes )
T9210 1044-1045 -LRB- denotes (
T9211 1045-1051 NN denotes Figure
T9212 1052-1054 NN denotes 4A
T9213 1055-1058 CC denotes and
T9214 1059-1064 NNP denotes Table
T9215 1065-1066 CD denotes 1
T9216 1066-1067 -RRB- denotes )
T9217 1067-1068 . denotes .
T9218 1069-1070 DT denotes A
T9219 1071-1072 CD denotes 5
T9220 1072-1073 SYM denotes
T9221 1073-1074 : denotes -
T9222 1074-1080 NN denotes region
T9223 1081-1082 -LRB- denotes (
T9224 1082-1084 CD denotes R1
T9225 1084-1085 -RRB- denotes )
T9226 1086-1090 IN denotes with
T9227 1091-1093 CD denotes 13
T9228 1094-1109 VBD denotes hypermethylated
T9229 1110-1113 NNP denotes CpG
T9230 1114-1119 NNS denotes sites
T9231 1120-1121 -LRB- denotes (
T9232 1121-1125 JJ denotes mean
T9233 1126-1132 NN denotes number
T9234 1133-1135 IN denotes of
T9235 1136-1146 JJ denotes methylated
T9236 1147-1153 NNS denotes clones
T9237 1154-1157 CD denotes 5.5
T9238 1158-1160 IN denotes of
T9239 1161-1162 CD denotes 8
T9240 1163-1167 IN denotes with
T9241 1168-1170 CD denotes 77
T9242 1170-1171 NN denotes %
T9243 1172-1182 VBD denotes methylated
T9244 1183-1187 NNS denotes CpGs
T9245 1187-1188 -RRB- denotes )
T9246 1189-1192 VBD denotes was
T9247 1193-1198 VBN denotes found
T9248 1199-1201 IN denotes in
T9249 1202-1206 JJS denotes most
T9250 1207-1212 NNS denotes cells
T9251 1213-1214 -LRB- denotes (
T9252 1214-1220 IN denotes except
T9253 1221-1225 NNP denotes SD-1
T9254 1226-1229 CC denotes and
T9255 1230-1239 NNP denotes RPMI-8226
T9256 1239-1240 -RRB- denotes )
T9257 1241-1244 CC denotes and
T9258 1245-1246 DT denotes a
T9259 1247-1248 CD denotes 3
T9260 1248-1249 SYM denotes
T9261 1249-1250 : denotes -
T9262 1250-1256 NN denotes region
T9263 1257-1258 -LRB- denotes (
T9264 1258-1260 CD denotes R3
T9265 1260-1261 -RRB- denotes )
T9266 1262-1264 IN denotes of
T9267 1265-1266 CD denotes 6
T9268 1267-1281 VBD denotes hypomethylated
T9269 1282-1285 NNP denotes CpG
T9270 1286-1291 NNS denotes sites
T9271 1292-1293 -LRB- denotes (
T9272 1293-1297 JJ denotes mean
T9273 1298-1304 NN denotes number
T9274 1305-1307 IN denotes of
T9275 1308-1318 JJ denotes methylated
T9276 1319-1325 NNS denotes clones
T9277 1326-1329 CD denotes 1.7
T9278 1330-1332 IN denotes of
T9279 1333-1334 CD denotes 8
T9280 1335-1339 IN denotes with
T9281 1340-1342 CD denotes 33
T9282 1342-1343 NN denotes %
T9283 1344-1354 VBD denotes methylated
T9284 1355-1359 NNS denotes CpGs
T9285 1359-1360 -RRB- denotes )
T9286 1361-1364 VBD denotes was
T9287 1365-1370 VBN denotes found
T9288 1371-1373 IN denotes in
T9289 1374-1378 JJS denotes most
T9290 1379-1384 NNS denotes cells
T9291 1385-1386 -LRB- denotes (
T9292 1386-1392 IN denotes except
T9293 1393-1399 NNP denotes CML-T1
T9294 1400-1403 CC denotes and
T9295 1404-1409 NNP denotes U-937
T9296 1409-1410 -RRB- denotes )
T9297 1411-1412 -LRB- denotes (
T9298 1412-1418 NN denotes Figure
T9299 1419-1421 NN denotes 4A
T9300 1422-1425 CC denotes and
T9301 1426-1431 NNP denotes Table
T9302 1432-1433 CD denotes 1
T9303 1433-1434 -RRB- denotes )
T9304 1434-1435 . denotes .
T9305 1436-1448 RB denotes Intriguingly
T9306 1448-1449 , denotes ,
T9307 1450-1451 DT denotes a
T9308 1452-1459 NN denotes stretch
T9309 1460-1462 IN denotes of
T9310 1463-1465 CD denotes 13
T9311 1466-1469 NNP denotes CpG
T9312 1470-1475 NNS denotes sites
T9313 1476-1477 -LRB- denotes (
T9314 1477-1478 # denotes #
T9315 1478-1480 CD denotes 10
T9316 1481-1483 CD denotes 22
T9317 1483-1484 : denotes ;
T9318 1485-1487 NNP denotes R2
T9319 1487-1488 -RRB- denotes )
T9320 1489-1492 VBD denotes was
T9321 1493-1501 VBN denotes detected
T9322 1502-1504 IN denotes in
T9323 1505-1512 IN denotes between
T9324 1513-1518 DT denotes these
T9325 1519-1526 NNS denotes regions
T9326 1526-1527 , denotes ,
T9327 1528-1533 WDT denotes which
T9328 1534-1538 VBD denotes were
T9329 1539-1545 RB denotes highly
T9330 1546-1556 VBN denotes methylated
T9331 1557-1559 IN denotes in
T9332 1560-1574 JJ denotes IRF-4-negative
T9333 1575-1576 -LRB- denotes (
T9334 1576-1580 JJ denotes mean
T9335 1581-1587 NN denotes number
T9336 1588-1590 IN denotes of
T9337 1591-1601 JJ denotes methylated
T9338 1602-1608 NNS denotes clones
T9339 1609-1612 CD denotes 7.1
T9340 1613-1615 IN denotes of
T9341 1616-1617 CD denotes 8
T9342 1618-1622 IN denotes with
T9343 1623-1625 CD denotes 89
T9344 1625-1626 NN denotes %
T9345 1627-1637 VBD denotes methylated
T9346 1638-1642 NNS denotes CpGs
T9347 1642-1643 -RRB- denotes )
T9348 1644-1647 CC denotes but
T9349 1648-1655 RB denotes totally
T9350 1656-1670 JJ denotes non-methylated
T9351 1671-1673 IN denotes in
T9352 1674-1688 JJ denotes IRF-4-positive
T9353 1689-1694 NNS denotes cells
T9354 1695-1696 -LRB- denotes (
T9355 1696-1702 NN denotes Figure
T9356 1703-1705 CD denotes 4A
T9357 1706-1709 CC denotes and
T9358 1710-1711 NNP denotes B
T9359 1711-1712 -RRB- denotes )
T9360 1712-1713 . denotes .
T9361 1714-1725 RB denotes Furthermore
T9362 1725-1726 , denotes ,
T9363 1727-1732 CD denotes three
T9364 1733-1736 NNP denotes CpG
T9365 1737-1742 NNS denotes sites
T9366 1743-1745 IN denotes at
T9367 1746-1749 DT denotes the
T9368 1750-1751 CD denotes 5
T9369 1751-1752 NN denotes
T9370 1753-1756 NN denotes end
T9371 1757-1758 -LRB- denotes (
T9372 1758-1759 # denotes #
T9373 1759-1761 CD denotes 54
T9374 1761-1762 , denotes ,
T9375 1763-1765 CD denotes 56
T9376 1765-1766 , denotes ,
T9377 1767-1769 CD denotes 58
T9378 1769-1770 -RRB- denotes )
T9379 1771-1774 CC denotes and
T9380 1775-1778 CD denotes two
T9381 1779-1782 NNP denotes CpG
T9382 1783-1789 NNS denotes motifs
T9383 1790-1792 IN denotes at
T9384 1793-1796 DT denotes the
T9385 1797-1798 CD denotes 3
T9386 1798-1799 NN denotes
T9387 1800-1803 NN denotes end
T9388 1804-1805 -LRB- denotes (
T9389 1805-1806 # denotes #
T9390 1806-1807 CD denotes 1
T9391 1807-1808 , denotes ,
T9392 1809-1810 CD denotes 2
T9393 1810-1811 -RRB- denotes )
T9394 1812-1818 VBD denotes showed
T9395 1819-1823 DT denotes this
T9396 1824-1830 JJ denotes direct
T9397 1831-1842 NN denotes correlation
T9398 1843-1850 IN denotes between
T9399 1851-1855 JJ denotes high
T9400 1856-1867 NN denotes methylation
T9401 1868-1874 NN denotes status
T9402 1875-1878 CC denotes and
T9403 1879-1886 NN denotes absence
T9404 1887-1889 IN denotes of
T9405 1890-1895 NN denotes IRF-4
T9406 1896-1906 NN denotes expression
T9407 1906-1907 . denotes .
T9408 1908-1910 IN denotes In
T9409 1911-1919 NN denotes addition
T9410 1919-1920 , denotes ,
T9411 1921-1924 CD denotes two
T9412 1925-1928 NNP denotes CpG
T9413 1929-1934 NNS denotes sites
T9414 1935-1942 VBN denotes located
T9415 1943-1945 IN denotes in
T9416 1946-1947 DT denotes a
T9417 1948-1952 NNP denotes NFκB
T9418 1953-1954 -LRB- denotes (
T9419 1954-1955 # denotes #
T9420 1955-1957 CD denotes 48
T9421 1957-1958 -RRB- denotes )
T9422 1959-1962 CC denotes and
T9423 1963-1964 DT denotes a
T9424 1965-1968 NNP denotes SP1
T9425 1969-1976 NN denotes element
T9426 1977-1978 -LRB- denotes (
T9427 1978-1979 # denotes #
T9428 1979-1981 CD denotes 45
T9429 1981-1982 -RRB- denotes )
T9430 1983-1986 VBP denotes are
T9431 1987-1991 RBR denotes less
T9432 1992-2002 VBN denotes methylated
T9433 2003-2005 IN denotes in
T9434 2006-2020 JJ denotes IRF-4-positive
T9435 2021-2025 IN denotes than
T9436 2026-2028 IN denotes in
T9437 2029-2043 JJ denotes IRF-4-negative
T9438 2044-2049 NNS denotes cells
T9439 2050-2051 -LRB- denotes (
T9440 2051-2055 JJ denotes mean
T9441 2056-2062 NN denotes number
T9442 2063-2065 IN denotes of
T9443 2066-2076 JJ denotes methylated
T9444 2077-2083 NNS denotes clones
T9445 2083-2084 : denotes :
T9446 2085-2088 CD denotes 1/8
T9447 2089-2095 CC denotes versus
T9448 2096-2099 CD denotes 8/8
T9449 2099-2100 -RRB- denotes )
T9450 2100-2101 . denotes .
T9451 2102-2107 DT denotes These
T9452 2108-2115 NNS denotes results
T9453 2116-2124 VBP denotes indicate
T9454 2125-2128 DT denotes the
T9455 2129-2140 NN denotes involvement
T9456 2141-2143 IN denotes of
T9457 2144-2147 NNP denotes CpG
T9458 2148-2159 NN denotes methylation
T9459 2160-2162 IN denotes in
T9460 2163-2166 DT denotes the
T9461 2167-2177 NN denotes regulation
T9462 2178-2180 IN denotes of
T9463 2181-2186 NN denotes IRF-4
T9464 2187-2197 NN denotes expression
T9465 2198-2200 IN denotes in
T9466 2201-2209 JJ denotes leukemic
T9467 2210-2215 NNS denotes cells
T9468 2215-2216 . denotes .
R7513 T9022 T9024 amod Specific,sites
R7514 T9023 T9024 compound CpG,sites
R7515 T9024 T9030 nsubjpass sites,methylated
R7516 T9025 T9024 prep in,sites
R7517 T9026 T9028 det the,promoter
R7518 T9027 T9028 compound IRF-4,promoter
R7519 T9028 T9025 pobj promoter,in
R7520 T9029 T9030 auxpass are,methylated
R7521 T9030 T9030 ROOT methylated,methylated
R7522 T9031 T9030 prep in,methylated
R7523 T9032 T9033 amod hematopoietic,cells
R7524 T9033 T9031 pobj cells,in
R7525 T9034 T9048 prep In,treated
R7526 T9035 T9034 pobj order,In
R7527 T9036 T9038 aux to,map
R7528 T9037 T9038 advmod exactly,map
R7529 T9038 T9035 acl map,order
R7530 T9039 T9041 det the,sites
R7531 T9040 T9041 compound methylation,sites
R7532 T9041 T9038 dobj sites,map
R7533 T9042 T9041 prep within,sites
R7534 T9043 T9045 det the,promoter
R7535 T9044 T9045 compound IRF-4,promoter
R7536 T9045 T9042 pobj promoter,within
R7537 T9046 T9048 punct ",",treated
R7538 T9047 T9048 nsubj we,treated
R7539 T9048 T9048 ROOT treated,treated
R7540 T9049 T9060 nmod DNA,cells
R7541 T9050 T9049 prep of,DNA
R7542 T9051 T9050 pobj Jurkat,of
R7543 T9052 T9051 punct ",",Jurkat
R7544 T9053 T9051 conj CML-T1,Jurkat
R7545 T9054 T9053 punct ",",CML-T1
R7546 T9055 T9053 conj U-937,CML-T1
R7547 T9056 T9055 punct ",",U-937
R7548 T9057 T9055 conj K-562,U-937
R7549 T9058 T9057 cc and,K-562
R7550 T9059 T9057 conj EM-2,K-562
R7551 T9060 T9048 dobj cells,treated
R7552 T9061 T9063 advmod as,as
R7553 T9062 T9063 advmod well,as
R7554 T9063 T9048 prep as,treated
R7555 T9064 T9063 prep of,as
R7556 T9065 T9064 pobj SD-1,of
R7557 T9066 T9065 punct ",",SD-1
R7558 T9067 T9065 conj RPMI-8226,SD-1
R7559 T9068 T9067 cc and,RPMI-8226
R7560 T9069 T9067 conj BV-173,RPMI-8226
R7561 T9070 T9071 compound control,cells
R7562 T9071 T9048 advcl cells,treated
R7563 T9072 T9071 prep with,cells
R7564 T9073 T9072 pobj bisulfite,with
R7565 T9074 T9073 punct ",",bisulfite
R7566 T9075 T9077 nsubj which,converts
R7567 T9076 T9077 advmod chemically,converts
R7568 T9077 T9073 relcl converts,bisulfite
R7569 T9078 T9079 amod unmethylated,cytosine
R7570 T9079 T9077 dobj cytosine,converts
R7571 T9080 T9081 aux to,uracil
R7572 T9081 T9077 xcomp uracil,converts
R7573 T9082 T9048 punct ",",treated
R7574 T9083 T9085 mark whereas,has
R7575 T9084 T9085 nsubj it,has
R7576 T9085 T9048 advcl has,treated
R7577 T9086 T9087 det no,effect
R7578 T9087 T9085 dobj effect,has
R7579 T9088 T9087 prep on,effect
R7580 T9089 T9090 amod methylated,cytosine
R7581 T9090 T9088 pobj cytosine,on
R7582 T9091 T9085 punct ",",has
R7583 T9092 T9093 advmod i.e.,in
R7584 T9093 T9085 prep in,has
R7585 T9094 T9093 pobj CpG,in
R7586 T9095 T9094 punct (,CpG
R7587 T9096 T9094 appos 34,CpG
R7588 T9097 T9094 punct ),CpG
R7589 T9098 T9048 punct .,treated
R7590 T9099 T9100 det This,technique
R7591 T9100 T9101 nsubj technique,is
R7592 T9101 T9101 ROOT is,is
R7593 T9102 T9103 advmod especially,useful
R7594 T9103 T9101 acomp useful,is
R7595 T9104 T9103 prep for,useful
R7596 T9105 T9104 pobj detection,for
R7597 T9106 T9105 prep of,detection
R7598 T9107 T9109 amod unknown,patterns
R7599 T9108 T9109 compound methylation,patterns
R7600 T9109 T9106 pobj patterns,of
R7601 T9110 T9101 punct .,is
R7602 T9111 T9112 compound PCR,amplification
R7603 T9112 T9121 nsubj amplification,showed
R7604 T9113 T9112 punct ",",amplification
R7605 T9114 T9112 conj cloning,amplification
R7606 T9115 T9114 cc and,cloning
R7607 T9116 T9114 conj sequencing,cloning
R7608 T9117 T9116 prep of,sequencing
R7609 T9118 T9120 det the,DNA
R7610 T9119 T9120 amod bisulfite-treated,DNA
R7611 T9120 T9117 pobj DNA,of
R7612 T9121 T9121 ROOT showed,showed
R7613 T9122 T9125 det a,pattern
R7614 T9123 T9125 amod specific,pattern
R7615 T9124 T9125 compound methylation,pattern
R7616 T9125 T9121 dobj pattern,showed
R7617 T9126 T9125 prep of,pattern
R7618 T9127 T9131 det the,sites
R7619 T9128 T9131 amod analyzed,sites
R7620 T9129 T9131 nummod 62,sites
R7621 T9130 T9131 compound CpG,sites
R7622 T9131 T9126 pobj sites,of
R7623 T9132 T9131 prep in,sites
R7624 T9133 T9135 det all,lines
R7625 T9134 T9135 compound cell,lines
R7626 T9135 T9132 pobj lines,in
R7627 T9136 T9137 punct (,Figure
R7628 T9137 T9125 appos Figure,pattern
R7629 T9138 T9137 nummod 4,Figure
R7630 T9139 T9137 cc and,Figure
R7631 T9140 T9137 conj Table,Figure
R7632 T9141 T9140 nummod 1,Table
R7633 T9142 T9125 punct ),pattern
R7634 T9143 T9121 punct .,showed
R7635 T9144 T9150 prep In,ranged
R7636 T9145 T9144 amod general,In
R7637 T9146 T9150 punct ",",ranged
R7638 T9147 T9149 det the,status
R7639 T9148 T9149 amod methylational,status
R7640 T9149 T9150 nsubj status,ranged
R7641 T9150 T9150 ROOT ranged,ranged
R7642 T9151 T9150 prep from,ranged
R7643 T9152 T9154 nummod one,line
R7644 T9153 T9154 compound cell,line
R7645 T9154 T9151 pobj line,from
R7646 T9155 T9154 prep with,line
R7647 T9156 T9160 det a,promoter
R7648 T9157 T9158 advmod nearly,non-methylated
R7649 T9158 T9160 amod non-methylated,promoter
R7650 T9159 T9160 compound IRF-4,promoter
R7651 T9160 T9155 pobj promoter,with
R7652 T9161 T9160 punct (,promoter
R7653 T9162 T9160 appos SD-1,promoter
R7654 T9163 T9162 punct ",",SD-1
R7655 T9164 T9162 appos IRF-4-positive,SD-1
R7656 T9165 T9162 punct ),SD-1
R7657 T9166 T9160 prep to,promoter
R7658 T9167 T9171 det a,promoter
R7659 T9168 T9169 advmod completely,methylated
R7660 T9169 T9171 amod methylated,promoter
R7661 T9170 T9171 compound IRF-4,promoter
R7662 T9171 T9166 pobj promoter,to
R7663 T9172 T9171 prep in,promoter
R7664 T9173 T9172 pobj CML-T1,in
R7665 T9174 T9175 punct (,IRF-4-negative
R7666 T9175 T9173 appos IRF-4-negative,CML-T1
R7667 T9176 T9175 punct ),IRF-4-negative
R7668 T9177 T9150 punct .,ranged
R7669 T9178 T9192 advmod Interestingly,was
R7670 T9179 T9192 punct ",",was
R7671 T9180 T9181 det the,percentage
R7672 T9181 T9192 nsubj percentage,was
R7673 T9182 T9181 prep of,percentage
R7674 T9183 T9184 compound CpG,methylation
R7675 T9184 T9182 pobj methylation,of
R7676 T9185 T9181 prep in,percentage
R7677 T9186 T9188 det the,promoter
R7678 T9187 T9188 compound IRF-4,promoter
R7679 T9188 T9185 pobj promoter,in
R7680 T9189 T9188 prep from,promoter
R7681 T9190 T9191 amod IRF-4-positive,cells
R7682 T9191 T9189 pobj cells,from
R7683 T9192 T9192 ROOT was,was
R7684 T9193 T9194 advmod very,low
R7685 T9194 T9192 acomp low,was
R7686 T9195 T9206 punct (,mean
R7687 T9196 T9206 meta mean,mean
R7688 T9197 T9198 nummod 24,%
R7689 T9198 T9196 dobj %,mean
R7690 T9199 T9196 punct ),mean
R7691 T9200 T9206 prep as,mean
R7692 T9201 T9200 prep compared,as
R7693 T9202 T9201 prep with,compared
R7694 T9203 T9204 amod IRF-4-negative,cells
R7695 T9204 T9202 pobj cells,with
R7696 T9205 T9206 punct (,mean
R7697 T9206 T9192 parataxis mean,was
R7698 T9207 T9208 nummod 94,%
R7699 T9208 T9206 dobj %,mean
R7700 T9209 T9206 punct ),mean
R7701 T9210 T9212 punct (,4A
R7702 T9211 T9212 compound Figure,4A
R7703 T9212 T9192 attr 4A,was
R7704 T9213 T9212 cc and,4A
R7705 T9214 T9212 conj Table,4A
R7706 T9215 T9214 nummod 1,Table
R7707 T9216 T9214 punct ),Table
R7708 T9217 T9192 punct .,was
R7709 T9218 T9222 det A,region
R7710 T9219 T9222 nummod 5,region
R7711 T9220 T9222 punct ′,region
R7712 T9221 T9222 punct -,region
R7713 T9222 T9247 nsubjpass region,found
R7714 T9223 T9222 punct (,region
R7715 T9224 T9222 appos R1,region
R7716 T9225 T9222 punct ),region
R7717 T9226 T9222 prep with,region
R7718 T9227 T9230 nummod 13,sites
R7719 T9228 T9230 amod hypermethylated,sites
R7720 T9229 T9230 compound CpG,sites
R7721 T9230 T9226 pobj sites,with
R7722 T9231 T9230 punct (,sites
R7723 T9232 T9233 amod mean,number
R7724 T9233 T9230 appos number,sites
R7725 T9234 T9233 prep of,number
R7726 T9235 T9236 amod methylated,clones
R7727 T9236 T9234 pobj clones,of
R7728 T9237 T9233 appos 5.5,number
R7729 T9238 T9237 prep of,5.5
R7730 T9239 T9238 pobj 8,of
R7731 T9240 T9237 prep with,5.5
R7732 T9241 T9242 nummod 77,%
R7733 T9242 T9240 pobj %,with
R7734 T9243 T9244 amod methylated,CpGs
R7735 T9244 T9242 appos CpGs,%
R7736 T9245 T9233 punct ),number
R7737 T9246 T9247 auxpass was,found
R7738 T9247 T9247 ROOT found,found
R7739 T9248 T9247 prep in,found
R7740 T9249 T9250 amod most,cells
R7741 T9250 T9248 pobj cells,in
R7742 T9251 T9247 punct (,found
R7743 T9252 T9247 prep except,found
R7744 T9253 T9252 pobj SD-1,except
R7745 T9254 T9253 cc and,SD-1
R7746 T9255 T9253 conj RPMI-8226,SD-1
R7747 T9256 T9255 punct ),RPMI-8226
R7748 T9257 T9247 cc and,found
R7749 T9258 T9262 det a,region
R7750 T9259 T9262 nummod 3,region
R7751 T9260 T9262 punct ′,region
R7752 T9261 T9262 punct -,region
R7753 T9262 T9268 nsubj region,hypomethylated
R7754 T9263 T9262 punct (,region
R7755 T9264 T9262 appos R3,region
R7756 T9265 T9262 punct ),region
R7757 T9266 T9262 prep of,region
R7758 T9267 T9266 pobj 6,of
R7759 T9268 T9247 conj hypomethylated,found
R7760 T9269 T9270 compound CpG,sites
R7761 T9270 T9268 dobj sites,hypomethylated
R7762 T9271 T9270 punct (,sites
R7763 T9272 T9273 amod mean,number
R7764 T9273 T9287 nsubjpass number,found
R7765 T9274 T9273 prep of,number
R7766 T9275 T9276 amod methylated,clones
R7767 T9276 T9274 pobj clones,of
R7768 T9277 T9273 appos 1.7,number
R7769 T9278 T9277 prep of,1.7
R7770 T9279 T9278 pobj 8,of
R7771 T9280 T9277 prep with,1.7
R7772 T9281 T9282 nummod 33,%
R7773 T9282 T9284 compound %,CpGs
R7774 T9283 T9284 compound methylated,CpGs
R7775 T9284 T9280 pobj CpGs,with
R7776 T9285 T9273 punct ),number
R7777 T9286 T9287 auxpass was,found
R7778 T9287 T9268 conj found,hypomethylated
R7779 T9288 T9287 prep in,found
R7780 T9289 T9290 amod most,cells
R7781 T9290 T9288 pobj cells,in
R7782 T9291 T9287 punct (,found
R7783 T9292 T9287 prep except,found
R7784 T9293 T9292 pobj CML-T1,except
R7785 T9294 T9293 cc and,CML-T1
R7786 T9295 T9293 conj U-937,CML-T1
R7787 T9296 T9293 punct ),CML-T1
R7788 T9297 T9299 punct (,4A
R7789 T9298 T9299 compound Figure,4A
R7790 T9299 T9293 appos 4A,CML-T1
R7791 T9300 T9299 cc and,4A
R7792 T9301 T9299 conj Table,4A
R7793 T9302 T9301 nummod 1,Table
R7794 T9303 T9301 punct ),Table
R7795 T9304 T9287 punct .,found
R7796 T9305 T9321 advmod Intriguingly,detected
R7797 T9306 T9321 punct ",",detected
R7798 T9307 T9308 det a,stretch
R7799 T9308 T9321 nsubjpass stretch,detected
R7800 T9309 T9308 prep of,stretch
R7801 T9310 T9312 nummod 13,sites
R7802 T9311 T9312 compound CpG,sites
R7803 T9312 T9309 pobj sites,of
R7804 T9313 T9312 punct (,sites
R7805 T9314 T9315 nmod #,10
R7806 T9315 T9312 appos 10,sites
R7807 T9316 T9315 appos 22,10
R7808 T9317 T9315 punct ;,10
R7809 T9318 T9315 appos R2,10
R7810 T9319 T9312 punct ),sites
R7811 T9320 T9321 auxpass was,detected
R7812 T9321 T9321 ROOT detected,detected
R7813 T9322 T9321 prep in,detected
R7814 T9323 T9322 prep between,in
R7815 T9324 T9325 det these,regions
R7816 T9325 T9323 pobj regions,between
R7817 T9326 T9325 punct ",",regions
R7818 T9327 T9330 nsubjpass which,methylated
R7819 T9328 T9330 auxpass were,methylated
R7820 T9329 T9330 advmod highly,methylated
R7821 T9330 T9325 relcl methylated,regions
R7822 T9331 T9330 prep in,methylated
R7823 T9332 T9335 amod IRF-4-negative,number
R7824 T9333 T9335 punct (,number
R7825 T9334 T9335 amod mean,number
R7826 T9335 T9331 pobj number,in
R7827 T9336 T9335 prep of,number
R7828 T9337 T9338 amod methylated,clones
R7829 T9338 T9336 pobj clones,of
R7830 T9339 T9335 nummod 7.1,number
R7831 T9340 T9339 prep of,7.1
R7832 T9341 T9340 pobj 8,of
R7833 T9342 T9330 prep with,methylated
R7834 T9343 T9344 nummod 89,%
R7835 T9344 T9342 pobj %,with
R7836 T9345 T9346 amod methylated,CpGs
R7837 T9346 T9344 appos CpGs,%
R7838 T9347 T9330 punct ),methylated
R7839 T9348 T9330 cc but,methylated
R7840 T9349 T9350 advmod totally,non-methylated
R7841 T9350 T9321 conj non-methylated,detected
R7842 T9351 T9350 prep in,non-methylated
R7843 T9352 T9353 amod IRF-4-positive,cells
R7844 T9353 T9351 pobj cells,in
R7845 T9354 T9355 punct (,Figure
R7846 T9355 T9355 ROOT Figure,Figure
R7847 T9356 T9355 nummod 4A,Figure
R7848 T9357 T9355 cc and,Figure
R7849 T9358 T9355 conj B,Figure
R7850 T9359 T9355 punct ),Figure
R7851 T9360 T9321 punct .,detected
R7852 T9361 T9394 advmod Furthermore,showed
R7853 T9362 T9394 punct ",",showed
R7854 T9363 T9365 nummod three,sites
R7855 T9364 T9365 compound CpG,sites
R7856 T9365 T9394 nsubj sites,showed
R7857 T9366 T9365 prep at,sites
R7858 T9367 T9370 det the,end
R7859 T9368 T9369 nummod 5,′
R7860 T9369 T9370 compound ′,end
R7861 T9370 T9366 pobj end,at
R7862 T9371 T9370 punct (,end
R7863 T9372 T9377 punct #,58
R7864 T9373 T9372 nummod 54,#
R7865 T9374 T9375 punct ",",56
R7866 T9375 T9377 dep 56,58
R7867 T9376 T9377 punct ",",58
R7868 T9377 T9370 appos 58,end
R7869 T9378 T9370 punct ),end
R7870 T9379 T9365 cc and,sites
R7871 T9380 T9382 nummod two,motifs
R7872 T9381 T9382 compound CpG,motifs
R7873 T9382 T9365 conj motifs,sites
R7874 T9383 T9382 prep at,motifs
R7875 T9384 T9387 det the,end
R7876 T9385 T9386 nummod 3,′
R7877 T9386 T9387 compound ′,end
R7878 T9387 T9383 pobj end,at
R7879 T9388 T9394 punct (,showed
R7880 T9389 T9394 nsubj #,showed
R7881 T9390 T9389 nummod 1,#
R7882 T9391 T9389 punct ",",#
R7883 T9392 T9389 appos 2,#
R7884 T9393 T9394 punct ),showed
R7885 T9394 T9394 ROOT showed,showed
R7886 T9395 T9397 det this,correlation
R7887 T9396 T9397 amod direct,correlation
R7888 T9397 T9394 dobj correlation,showed
R7889 T9398 T9397 prep between,correlation
R7890 T9399 T9400 amod high,methylation
R7891 T9400 T9401 compound methylation,status
R7892 T9401 T9398 pobj status,between
R7893 T9402 T9401 cc and,status
R7894 T9403 T9401 conj absence,status
R7895 T9404 T9401 prep of,status
R7896 T9405 T9406 compound IRF-4,expression
R7897 T9406 T9404 pobj expression,of
R7898 T9407 T9394 punct .,showed
R7899 T9408 T9430 prep In,are
R7900 T9409 T9408 pobj addition,In
R7901 T9410 T9430 punct ",",are
R7902 T9411 T9413 nummod two,sites
R7903 T9412 T9413 compound CpG,sites
R7904 T9413 T9430 nsubj sites,are
R7905 T9414 T9413 acl located,sites
R7906 T9415 T9414 prep in,located
R7907 T9416 T9417 det a,NFκB
R7908 T9417 T9415 pobj NFκB,in
R7909 T9418 T9417 punct (,NFκB
R7910 T9419 T9420 nmod #,48
R7911 T9420 T9414 npadvmod 48,located
R7912 T9421 T9414 punct ),located
R7913 T9422 T9414 cc and,located
R7914 T9423 T9425 det a,element
R7915 T9424 T9425 compound SP1,element
R7916 T9425 T9413 conj element,sites
R7917 T9426 T9425 punct (,element
R7918 T9427 T9428 nmod #,45
R7919 T9428 T9425 appos 45,element
R7920 T9429 T9425 punct ),element
R7921 T9430 T9430 ROOT are,are
R7922 T9431 T9432 advmod less,methylated
R7923 T9432 T9430 attr methylated,are
R7924 T9433 T9432 prep in,methylated
R7925 T9434 T9433 pobj IRF-4-positive,in
R7926 T9435 T9432 prep than,methylated
R7927 T9436 T9435 prep in,than
R7928 T9437 T9438 amod IRF-4-negative,cells
R7929 T9438 T9436 pobj cells,in
R7930 T9439 T9432 punct (,methylated
R7931 T9440 T9441 amod mean,number
R7932 T9441 T9432 appos number,methylated
R7933 T9442 T9441 prep of,number
R7934 T9443 T9444 amod methylated,clones
R7935 T9444 T9442 pobj clones,of
R7936 T9445 T9441 punct :,number
R7937 T9446 T9441 appos 1/8,number
R7938 T9447 T9446 cc versus,1/8
R7939 T9448 T9446 conj 8/8,1/8
R7940 T9449 T9441 punct ),number
R7941 T9450 T9430 punct .,are
R7942 T9451 T9452 det These,results
R7943 T9452 T9453 nsubj results,indicate
R7944 T9453 T9453 ROOT indicate,indicate
R7945 T9454 T9455 det the,involvement
R7946 T9455 T9453 dobj involvement,indicate
R7947 T9456 T9455 prep of,involvement
R7948 T9457 T9458 compound CpG,methylation
R7949 T9458 T9456 pobj methylation,of
R7950 T9459 T9458 prep in,methylation
R7951 T9460 T9461 det the,regulation
R7952 T9461 T9459 pobj regulation,in
R7953 T9462 T9461 prep of,regulation
R7954 T9463 T9464 compound IRF-4,expression
R7955 T9464 T9462 pobj expression,of
R7956 T9465 T9461 prep in,regulation
R7957 T9466 T9467 amod leukemic,cells
R7958 T9467 T9465 pobj cells,in
R7959 T9468 T9453 punct .,indicate

GO-BP

Id Subject Object Predicate Lexical cue
T8571 107-118 http://purl.obolibrary.org/obo/GO_0032259 denotes methylation
T8572 472-483 http://purl.obolibrary.org/obo/GO_0032259 denotes methylation
T8573 583-594 http://purl.obolibrary.org/obo/GO_0032259 denotes methylation
T8574 911-922 http://purl.obolibrary.org/obo/GO_0032259 denotes methylation
T8575 1856-1867 http://purl.obolibrary.org/obo/GO_0032259 denotes methylation
T8576 2148-2159 http://purl.obolibrary.org/obo/GO_0032259 denotes methylation
T8577 2167-2177 http://purl.obolibrary.org/obo/GO_0065007 denotes regulation

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T9599 9-18 Protein denotes CpG sites
T9600 26-40 Protein denotes IRF-4 promoter
T9601 136-150 Protein denotes IRF-4 promoter
T9602 831-845 Protein denotes IRF-4 promoter
T9603 930-944 Protein denotes IRF-4 promoter
T9604 950-955 Protein denotes IRF-4
T9605 956-964 Gene_expression denotes positive
T9606 1733-1742 Protein denotes CpG sites
T9607 1890-1895 Protein denotes IRF-4
T9608 1896-1906 Gene_expression denotes expression
T9609 1925-1934 Protein denotes CpG sites
T9610 1948-1952 Protein denotes NFκB
T9611 1965-1968 Protein denotes SP1
T9612 2144-2147 Protein denotes CpG
T9613 2181-2186 Protein denotes IRF-4
T9614 2187-2197 Gene_expression denotes expression
T9615 2167-2177 Regulation denotes regulation
T9616 2129-2140 Regulation denotes involvement
R8008 T9604 T9605 themeOf IRF-4,positive
R8009 T9607 T9608 themeOf IRF-4,expression
R8010 T9613 T9614 themeOf IRF-4,expression
R8011 T9614 T9615 themeOf expression,regulation
R8012 T9615 T9616 themeOf regulation,involvement

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue Negation Speculation
T8548 1680-1688 Gene_expression denotes positive
T8549 1879-1886 Negative_regulation denotes absence
T8550 1890-1895 Protein denotes IRF-4
T8551 1896-1906 Gene_expression denotes expression
T8552 2006-2011 Protein denotes IRF-4
T8553 2012-2020 Gene_expression denotes positive
T8554 2029-2034 Protein denotes IRF-4
T8555 2035-2043 Gene_expression denotes negative true
T8556 2167-2177 Regulation denotes regulation true
T8557 2181-2186 Protein denotes IRF-4
T8558 2187-2197 Gene_expression denotes expression
T8532 26-31 Protein denotes IRF-4
T8533 136-141 Protein denotes IRF-4
T8534 766-771 Protein denotes IRF-4
T8535 788-793 Protein denotes IRF-4
T8536 794-802 Gene_expression denotes positive
T8537 831-836 Protein denotes IRF-4
T8538 857-862 Protein denotes IRF-4
T8539 863-871 Gene_expression denotes negative true
T8540 930-935 Protein denotes IRF-4
T8541 950-955 Protein denotes IRF-4
T8542 956-964 Gene_expression denotes positive
T8543 1012-1017 Protein denotes IRF-4
T8544 1018-1026 Gene_expression denotes negative true
T8545 1560-1565 Protein denotes IRF-4
T8546 1566-1574 Gene_expression denotes negative true
T8547 1674-1679 Protein denotes IRF-4
R7070 T8535 T8536 themeOf IRF-4,positive
R7071 T8538 T8539 themeOf IRF-4,negative
R7072 T8541 T8542 themeOf IRF-4,positive
R7073 T8543 T8544 themeOf IRF-4,negative
R7074 T8545 T8546 themeOf IRF-4,negative
R7075 T8547 T8548 themeOf IRF-4,positive
R7076 T8550 T8551 themeOf IRF-4,expression
R7077 T8551 T8549 themeOf expression,absence
R7078 T8552 T8553 themeOf IRF-4,positive
R7079 T8554 T8555 themeOf IRF-4,negative
R7080 T8557 T8558 themeOf IRF-4,expression
R7081 T8558 T8556 themeOf expression,regulation

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T9006 26-31 Q15306 denotes IRF-4
T9007 136-141 Q15306 denotes IRF-4
T9008 766-771 Q15306 denotes IRF-4
T9009 788-793 Q15306 denotes IRF-4
T9010 831-836 Q15306 denotes IRF-4
T9011 857-862 Q15306 denotes IRF-4
T9012 930-935 Q15306 denotes IRF-4
T9013 950-955 Q15306 denotes IRF-4
T9014 1012-1017 Q15306 denotes IRF-4
T9015 1560-1565 Q15306 denotes IRF-4
T9016 1674-1679 Q15306 denotes IRF-4
T9017 1890-1895 Q15306 denotes IRF-4
T9018 1965-1968 P08047 denotes SP1
T9019 2006-2011 Q15306 denotes IRF-4
T9020 2029-2034 Q15306 denotes IRF-4
T9021 2181-2186 Q15306 denotes IRF-4

test2

Id Subject Object Predicate Lexical cue Negation Speculation
T8505 26-31 Protein denotes IRF-4
T8506 136-141 Protein denotes IRF-4 true
T8507 766-771 Protein denotes IRF-4
T8508 788-793 Protein denotes IRF-4 true
T8509 794-802 Gene_expression denotes positive true
T8510 831-836 Protein denotes IRF-4
T8511 857-862 Protein denotes IRF-4
T8512 863-871 Gene_expression denotes negative
T8513 930-935 Protein denotes IRF-4
T8514 950-955 Protein denotes IRF-4 true
T8515 956-964 Gene_expression denotes positive true
T8516 1012-1017 Protein denotes IRF-4
T8517 1018-1026 Gene_expression denotes negative
T8518 1560-1565 Protein denotes IRF-4
T8519 1566-1574 Gene_expression denotes negative
T8520 1674-1679 Protein denotes IRF-4
T8521 1680-1688 Gene_expression denotes positive
T8522 1879-1886 Negative_regulation denotes absence
T8523 1890-1895 Protein denotes IRF-4
T8524 1896-1906 Gene_expression denotes expression
T8525 2006-2011 Protein denotes IRF-4
T8526 2012-2020 Gene_expression denotes positive
T8527 2029-2034 Protein denotes IRF-4
T8528 2035-2043 Gene_expression denotes negative
T8529 2167-2177 Regulation denotes regulation
T8530 2181-2186 Protein denotes IRF-4
T8531 2187-2197 Gene_expression denotes expression
R7058 T8508 T8509 themeOf IRF-4,positive
R7059 T8511 T8512 themeOf IRF-4,negative
R7060 T8514 T8515 themeOf IRF-4,positive
R7061 T8516 T8517 themeOf IRF-4,negative
R7062 T8518 T8519 themeOf IRF-4,negative
R7063 T8520 T8521 themeOf IRF-4,positive
R7064 T8523 T8524 themeOf IRF-4,expression
R7065 T8524 T8522 themeOf expression,absence
R7066 T8525 T8526 themeOf IRF-4,positive
R7067 T8527 T8528 themeOf IRF-4,negative
R7068 T8530 T8531 themeOf IRF-4,expression
R7069 T8531 T8529 themeOf expression,regulation