PMC:1310901 / 1317-1458 JSONTXT

{"project":"bionlp-st-ge-2016-reference-eval","denotations":[{"id":"T892","span":{"begin":33,"end":38},"obj":"Protein"},{"id":"T893","span":{"begin":39,"end":47},"obj":"Gene_expression"},{"id":"T894","span":{"begin":59,"end":64},"obj":"Protein"},{"id":"T895","span":{"begin":65,"end":73},"obj":"Gene_expression"}],"relations":[{"id":"R643","pred":"themeOf","subj":"T892","obj":"T893"},{"id":"R644","pred":"themeOf","subj":"T894","obj":"T895"}],"text":"ifically methylated CpG sites in IRF-4-negative but not in IRF-4-positive cells. Third, we clearly determined promoter methylation as a mecha"}

{"project":"events-check-again","denotations":[{"id":"T828","span":{"begin":33,"end":38},"obj":"Protein"},{"id":"T829","span":{"begin":39,"end":47},"obj":"Gene_expression"},{"id":"T830","span":{"begin":59,"end":64},"obj":"Protein"},{"id":"T831","span":{"begin":65,"end":73},"obj":"Gene_expression"}],"relations":[{"id":"R610","pred":"themeOf","subj":"T828","obj":"T829"},{"id":"R611","pred":"themeOf","subj":"T830","obj":"T831"}],"attributes":[{"id":"M22","pred":"Negation","subj":"T829","obj":"true"}],"text":"ifically methylated CpG sites in IRF-4-negative but not in IRF-4-positive cells. Third, we clearly determined promoter methylation as a mecha"}

{"project":"GO-CC","denotations":[{"id":"T701","span":{"begin":74,"end":79},"obj":"http://purl.obolibrary.org/obo/GO_0005623"}],"text":"ifically methylated CpG sites in IRF-4-negative but not in IRF-4-positive cells. Third, we clearly determined promoter methylation as a mecha"}

{"project":"pmc-enju-pas","denotations":[{"id":"T320","span":{"begin":9,"end":19},"obj":"VB"},{"id":"T321","span":{"begin":20,"end":23},"obj":"NN"},{"id":"T322","span":{"begin":24,"end":29},"obj":"NN"},{"id":"T323","span":{"begin":30,"end":32},"obj":"IN"},{"id":"T324","span":{"begin":33,"end":47},"obj":"JJ"},{"id":"T325","span":{"begin":48,"end":51},"obj":"CC"},{"id":"T326","span":{"begin":52,"end":55},"obj":"RB"},{"id":"T327","span":{"begin":56,"end":58},"obj":"IN"},{"id":"T328","span":{"begin":59,"end":73},"obj":"JJ"},{"id":"T329","span":{"begin":74,"end":79},"obj":"NN"},{"id":"T330","span":{"begin":81,"end":86},"obj":"RB"},{"id":"T331","span":{"begin":86,"end":87},"obj":"-COMMA-"},{"id":"T332","span":{"begin":88,"end":90},"obj":"PRP"},{"id":"T333","span":{"begin":91,"end":98},"obj":"RB"},{"id":"T334","span":{"begin":99,"end":109},"obj":"VB"},{"id":"T335","span":{"begin":110,"end":118},"obj":"NN"},{"id":"T336","span":{"begin":119,"end":130},"obj":"NN"},{"id":"T337","span":{"begin":131,"end":133},"obj":"IN"},{"id":"T338","span":{"begin":134,"end":135},"obj":"DT"}],"relations":[{"id":"R244","pred":"arg1Of","subj":"T322","obj":"T320"},{"id":"R245","pred":"arg1Of","subj":"T322","obj":"T321"},{"id":"R246","pred":"arg1Of","subj":"T323","obj":"T325"},{"id":"R247","pred":"arg2Of","subj":"T324","obj":"T323"},{"id":"R248","pred":"arg2Of","subj":"T327","obj":"T325"},{"id":"R249","pred":"arg1Of","subj":"T327","obj":"T326"},{"id":"R250","pred":"arg2Of","subj":"T329","obj":"T327"},{"id":"R251","pred":"arg1Of","subj":"T329","obj":"T328"},{"id":"R252","pred":"arg1Of","subj":"T332","obj":"T334"},{"id":"R255","pred":"arg1Of","subj":"T334","obj":"T337"},{"id":"R257","pred":"arg2Of","subj":"T336","obj":"T334"},{"id":"R258","pred":"arg1Of","subj":"T336","obj":"T335"}],"namespaces":[{"prefix":"_base","uri":"http://kmcs.nii.ac.jp/enju/"}],"text":"ifically methylated CpG sites in IRF-4-negative but not in IRF-4-positive cells. Third, we clearly determined promoter methylation as a mecha"}

{"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T617","span":{"begin":9,"end":19},"obj":"VBN"},{"id":"T618","span":{"begin":20,"end":23},"obj":"NNP"},{"id":"T619","span":{"begin":24,"end":29},"obj":"NNS"},{"id":"T620","span":{"begin":30,"end":32},"obj":"IN"},{"id":"T621","span":{"begin":33,"end":47},"obj":"JJ"},{"id":"T622","span":{"begin":48,"end":51},"obj":"CC"},{"id":"T623","span":{"begin":52,"end":55},"obj":"RB"},{"id":"T624","span":{"begin":56,"end":58},"obj":"IN"},{"id":"T625","span":{"begin":59,"end":73},"obj":"JJ"},{"id":"T626","span":{"begin":74,"end":79},"obj":"NNS"},{"id":"T627","span":{"begin":79,"end":80},"obj":"."},{"id":"T628","span":{"begin":81,"end":86},"obj":"NNP"},{"id":"T629","span":{"begin":86,"end":87},"obj":","},{"id":"T630","span":{"begin":88,"end":90},"obj":"PRP"},{"id":"T631","span":{"begin":91,"end":98},"obj":"RB"},{"id":"T632","span":{"begin":99,"end":109},"obj":"VBD"},{"id":"T633","span":{"begin":110,"end":118},"obj":"NN"},{"id":"T634","span":{"begin":119,"end":130},"obj":"NN"},{"id":"T635","span":{"begin":131,"end":133},"obj":"IN"},{"id":"T636","span":{"begin":134,"end":135},"obj":"DT"}],"relations":[{"id":"R515","pred":"pobj","subj":"T626","obj":"T624"},{"id":"R517","pred":"npadvmod","subj":"T628","obj":"T632"},{"id":"R518","pred":"punct","subj":"T629","obj":"T632"},{"id":"R519","pred":"nsubj","subj":"T630","obj":"T632"},{"id":"R520","pred":"advmod","subj":"T631","obj":"T632"},{"id":"R521","pred":"ROOT","subj":"T632","obj":"T632"},{"id":"R522","pred":"compound","subj":"T633","obj":"T634"},{"id":"R523","pred":"dobj","subj":"T634","obj":"T632"},{"id":"R524","pred":"prep","subj":"T635","obj":"T632"},{"id":"R506","pred":"amod","subj":"T617","obj":"T619"},{"id":"R507","pred":"compound","subj":"T618","obj":"T619"},{"id":"R509","pred":"prep","subj":"T620","obj":"T619"},{"id":"R510","pred":"pobj","subj":"T621","obj":"T620"},{"id":"R511","pred":"cc","subj":"T622","obj":"T621"},{"id":"R512","pred":"neg","subj":"T623","obj":"T620"},{"id":"R513","pred":"prep","subj":"T624","obj":"T620"},{"id":"R514","pred":"amod","subj":"T625","obj":"T626"}],"text":"ifically methylated CpG sites in IRF-4-negative but not in IRF-4-positive cells. Third, we clearly determined promoter methylation as a mecha"}

{"project":"GO-BP","denotations":[{"id":"T126","span":{"begin":119,"end":130},"obj":"http://purl.obolibrary.org/obo/GO_0032259"}],"text":"ifically methylated CpG sites in IRF-4-negative but not in IRF-4-positive cells. Third, we clearly determined promoter methylation as a mecha"}

{"project":"bionlp-st-ge-2016-reference-tees","denotations":[{"id":"T860","span":{"begin":59,"end":64},"obj":"Protein"},{"id":"T861","span":{"begin":65,"end":73},"obj":"Gene_expression"}],"relations":[{"id":"R626","pred":"themeOf","subj":"T860","obj":"T861"}],"text":"ifically methylated CpG sites in IRF-4-negative but not in IRF-4-positive cells. Third, we clearly determined promoter methylation as a mecha"}

{"project":"bionlp-st-ge-2016-reference","denotations":[{"id":"T97","span":{"begin":59,"end":64},"obj":"Protein"},{"id":"T98","span":{"begin":65,"end":73},"obj":"Gene_expression"},{"id":"T95","span":{"begin":33,"end":38},"obj":"Protein"},{"id":"T96","span":{"begin":39,"end":47},"obj":"Gene_expression"}],"relations":[{"id":"R37","pred":"themeOf","subj":"T97","obj":"T98"},{"id":"R661","pred":"themeOf","subj":"T95","obj":"T96"}],"attributes":[{"id":"M27","pred":"Negation","subj":"T96","obj":"true"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"ifically methylated CpG sites in IRF-4-negative but not in IRF-4-positive cells. Third, we clearly determined promoter methylation as a mecha"}

{"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T408","span":{"begin":33,"end":38},"obj":"Q15306"},{"id":"T409","span":{"begin":59,"end":64},"obj":"Q15306"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"ifically methylated CpG sites in IRF-4-negative but not in IRF-4-positive cells. Third, we clearly determined promoter methylation as a mecha"}

{"project":"test2","denotations":[{"id":"T59","span":{"begin":33,"end":38},"obj":"Protein"},{"id":"T60","span":{"begin":39,"end":47},"obj":"Gene_expression"},{"id":"T61","span":{"begin":59,"end":64},"obj":"Protein"},{"id":"T62","span":{"begin":65,"end":73},"obj":"Gene_expression"}],"relations":[{"id":"R32","pred":"themeOf","subj":"T59","obj":"T60"},{"id":"R33","pred":"themeOf","subj":"T61","obj":"T62"}],"text":"ifically methylated CpG sites in IRF-4-negative but not in IRF-4-positive cells. Third, we clearly determined promoter methylation as a mecha"}