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PMC:1310901 / 1242-1494 JSONTXT

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bionlp-st-ge-2016-reference-eval

Id Subject Object Predicate Lexical cue
T892 108-113 Protein denotes IRF-4
T893 114-122 Gene_expression denotes negative
T894 134-139 Protein denotes IRF-4
T895 140-148 Gene_expression denotes positive
T896 225-230 Protein denotes IRF-4
T897 231-246 Negative_regulation denotes down-regulation
R643 T892 T893 themeOf IRF-4,negative
R644 T894 T895 themeOf IRF-4,positive
R645 T896 T897 themeOf IRF-4,down-regulation

events-check-again

Id Subject Object Predicate Lexical cue Negation
T828 108-113 Protein denotes IRF-4
T829 114-122 Gene_expression denotes negative true
T830 134-139 Protein denotes IRF-4
T831 140-148 Gene_expression denotes positive
T832 225-230 Protein denotes IRF-4
T833 231-246 Negative_regulation denotes down-regulation
R610 T828 T829 themeOf IRF-4,negative
R611 T830 T831 themeOf IRF-4,positive
R612 T832 T833 themeOf IRF-4,down-regulation

GO-CC

Id Subject Object Predicate Lexical cue
T701 149-154 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T311 0-1 -COMMA- denotes ,
T312 2-7 VB denotes using
T313 8-9 DT denotes a
T314 10-31 NN denotes restriction-PCR-assay
T315 32-35 CC denotes and
T316 36-56 NN denotes bisulfite-sequencing
T317 57-59 PRP denotes we
T318 60-70 VB denotes identified
T319 71-83 RB denotes specifically
T320 84-94 VB denotes methylated
T321 95-98 NN denotes CpG
T322 99-104 NN denotes sites
T323 105-107 IN denotes in
T324 108-122 JJ denotes IRF-4-negative
T325 123-126 CC denotes but
T326 127-130 RB denotes not
T327 131-133 IN denotes in
T328 134-148 JJ denotes IRF-4-positive
T329 149-154 NN denotes cells
T330 156-161 RB denotes Third
T331 161-162 -COMMA- denotes ,
T332 163-165 PRP denotes we
T333 166-173 RB denotes clearly
T334 174-184 VB denotes determined
T335 185-193 NN denotes promoter
T336 194-205 NN denotes methylation
T337 206-208 IN denotes as
T338 209-210 DT denotes a
T339 211-220 NN denotes mechanism
T340 221-224 IN denotes for
T341 225-230 NN denotes IRF-4
T342 231-246 NN denotes down-regulation
T343 247-250 IN denotes via
R231 T314 T315 arg1Of restriction-PCR-assay,and
R232 T315 T312 arg2Of and,using
R233 T315 T313 arg1Of and,a
R234 T316 T315 arg2Of bisulfite-sequencing,and
R235 T317 T312 arg1Of we,using
R236 T317 T318 arg1Of we,identified
R238 T318 T311 arg1Of identified,","
R239 T318 T312 modOf identified,using
R240 T318 T323 arg1Of identified,in
R241 T318 T327 arg1Of identified,in
R242 T320 T319 arg1Of methylated,specifically
R243 T322 T318 arg2Of sites,identified
R244 T322 T320 arg1Of sites,methylated
R245 T322 T321 arg1Of sites,CpG
R246 T323 T325 arg1Of in,but
R247 T324 T323 arg2Of IRF-4-negative,in
R248 T327 T325 arg2Of in,but
R249 T327 T326 arg1Of in,not
R250 T329 T327 arg2Of cells,in
R251 T329 T328 arg1Of cells,IRF-4-positive
R252 T332 T334 arg1Of we,determined
R255 T334 T337 arg1Of determined,as
R257 T336 T334 arg2Of methylation,determined
R258 T336 T335 arg1Of methylation,promoter
R259 T339 T337 arg2Of mechanism,as
R260 T339 T338 arg1Of mechanism,a
R261 T339 T340 arg1Of mechanism,for
R262 T339 T343 arg1Of mechanism,via
R263 T342 T340 arg2Of down-regulation,for
R264 T342 T341 arg1Of down-regulation,IRF-4

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T608 0-1 , denotes ,
T609 2-7 VBG denotes using
T610 8-9 DT denotes a
T611 10-31 JJ denotes restriction-PCR-assay
T612 32-35 CC denotes and
T613 36-56 JJ denotes bisulfite-sequencing
T614 57-59 PRP denotes we
T615 60-70 VBD denotes identified
T616 71-83 RB denotes specifically
T617 84-94 VBN denotes methylated
T618 95-98 NNP denotes CpG
T619 99-104 NNS denotes sites
T620 105-107 IN denotes in
T621 108-122 JJ denotes IRF-4-negative
T622 123-126 CC denotes but
T623 127-130 RB denotes not
T624 131-133 IN denotes in
T625 134-148 JJ denotes IRF-4-positive
T626 149-154 NNS denotes cells
T627 154-155 . denotes .
T628 156-161 NNP denotes Third
T629 161-162 , denotes ,
T630 163-165 PRP denotes we
T631 166-173 RB denotes clearly
T632 174-184 VBD denotes determined
T633 185-193 NN denotes promoter
T634 194-205 NN denotes methylation
T635 206-208 IN denotes as
T636 209-210 DT denotes a
T637 211-220 NN denotes mechanism
T638 221-224 IN denotes for
T639 225-230 NNP denotes IRF-4
T640 231-246 NN denotes down-regulation
T641 247-250 IN denotes via
R515 T626 T624 pobj cells,in
R516 T627 T615 punct .,identified
R517 T628 T632 npadvmod Third,determined
R518 T629 T632 punct ",",determined
R519 T630 T632 nsubj we,determined
R520 T631 T632 advmod clearly,determined
R521 T632 T632 ROOT determined,determined
R522 T633 T634 compound promoter,methylation
R523 T634 T632 dobj methylation,determined
R524 T635 T632 prep as,determined
R525 T636 T637 det a,mechanism
R526 T637 T635 pobj mechanism,as
R527 T638 T637 prep for,mechanism
R528 T639 T640 compound IRF-4,down-regulation
R529 T640 T638 pobj down-regulation,for
R530 T641 T632 prep via,determined
R497 T608 T615 punct ",",identified
R498 T609 T615 advcl using,identified
R499 T610 T615 npadvmod a,identified
R500 T611 T615 npadvmod restriction-PCR-assay,identified
R501 T612 T611 cc and,restriction-PCR-assay
R502 T613 T611 conj bisulfite-sequencing,restriction-PCR-assay
R503 T614 T615 nsubj we,identified
R504 T615 T615 ROOT identified,identified
R505 T616 T617 advmod specifically,methylated
R506 T617 T619 amod methylated,sites
R507 T618 T619 compound CpG,sites
R508 T619 T615 dobj sites,identified
R509 T620 T619 prep in,sites
R510 T621 T620 pobj IRF-4-negative,in
R511 T622 T621 cc but,IRF-4-negative
R512 T623 T620 neg not,in
R513 T624 T620 prep in,in
R514 T625 T626 amod IRF-4-positive,cells

GO-BP

Id Subject Object Predicate Lexical cue
T116 236-246 http://purl.obolibrary.org/obo/GO_0065007 denotes regulation
T126 194-205 http://purl.obolibrary.org/obo/GO_0032259 denotes methylation

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T860 134-139 Protein denotes IRF-4
T861 140-148 Gene_expression denotes positive
T862 225-230 Protein denotes IRF-4
T863 231-246 Negative_regulation denotes down-regulation
R626 T860 T861 themeOf IRF-4,positive
R627 T862 T863 themeOf IRF-4,down-regulation

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue Negation
T97 134-139 Protein denotes IRF-4
T98 140-148 Gene_expression denotes positive
T99 225-230 Protein denotes IRF-4
T100 231-246 Negative_regulation denotes down-regulation
T95 108-113 Protein denotes IRF-4
T96 114-122 Gene_expression denotes negative true
R37 T97 T98 themeOf IRF-4,positive
R38 T99 T100 themeOf IRF-4,down-regulation
R661 T95 T96 themeOf IRF-4,negative

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T408 108-113 Q15306 denotes IRF-4
T409 134-139 Q15306 denotes IRF-4
T410 225-230 Q15306 denotes IRF-4

test2

Id Subject Object Predicate Lexical cue
T59 108-113 Protein denotes IRF-4
T60 114-122 Gene_expression denotes negative
T61 134-139 Protein denotes IRF-4
T62 140-148 Gene_expression denotes positive
T63 225-230 Protein denotes IRF-4
T64 231-246 Negative_regulation denotes down-regulation
R32 T59 T60 themeOf IRF-4,negative
R33 T61 T62 themeOf IRF-4,positive
R34 T63 T64 themeOf IRF-4,down-regulation