> top > docs > PMC:1310901 > spans > 11224-11439 > annotations

PMC:1310901 / 11224-11439 JSONTXT

Annnotations TAB JSON ListView MergeView

bionlp-st-ge-2016-reference-eval

Id Subject Object Predicate Lexical cue
T5650 104-109 Protein denotes IRF-4

events-check-again

Id Subject Object Predicate Lexical cue
T5648 104-109 Protein denotes IRF-4

sentences

Id Subject Object Predicate Lexical cue
T4939 0-215 Sentence denotes Subsequent PCR amplification of 4 µl bisulfite-treated DNA was used for cloning of two fragments of the IRF-4 promoter (BS-I and BS-II) into pCR2.1 vector with the ‘TOPO TA cloning kit’ (Invitrogen) (see Figure 3A).
T87 0-215 Sentence denotes Subsequent PCR amplification of 4 µl bisulfite-treated DNA was used for cloning of two fragments of the IRF-4 promoter (BS-I and BS-II) into pCR2.1 vector with the ‘TOPO TA cloning kit’ (Invitrogen) (see Figure 3A).

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T5143 0-10 JJ denotes Subsequent
T5144 11-14 NN denotes PCR
T5145 15-28 NN denotes amplification
T5146 29-31 IN denotes of
T5147 32-33 CD denotes 4
T5148 34-36 NN denotes µl
T5149 37-54 JJ denotes bisulfite-treated
T5150 55-58 NN denotes DNA
T5151 59-62 VB denotes was
T5152 63-67 VB denotes used
T5153 68-71 IN denotes for
T5154 72-79 NN denotes cloning
T5155 80-82 IN denotes of
T5156 83-86 CD denotes two
T5157 87-96 NN denotes fragments
T5158 97-99 IN denotes of
T5159 100-103 DT denotes the
T5160 104-109 NN denotes IRF-4
T5161 110-118 NN denotes promoter
T5162 119-120 -LRB- denotes (
T5163 120-124 NN denotes BS-I
T5164 125-128 CC denotes and
T5165 129-134 NN denotes BS-II
T5166 134-135 -RRB- denotes )
T5167 136-140 IN denotes into
T5168 141-147 NN denotes pCR2.1
T5169 148-154 NN denotes vector
T5170 155-159 IN denotes with
T5171 160-163 DT denotes the
T5172 164-169 NN denotes ‘TOPO
T5173 170-172 NN denotes TA
T5174 173-180 NN denotes cloning
T5175 181-185 NN denotes kit’
T5176 186-187 -LRB- denotes (
T5177 187-197 NN denotes Invitrogen
T5178 197-198 -RRB- denotes )
T5179 199-200 -LRB- denotes (
T5180 200-203 VB denotes see
T5181 204-210 NN denotes Figure
T5182 211-213 NN denotes 3A
T5183 213-214 -RRB- denotes )
R4258 T5145 T5143 arg1Of amplification,Subsequent
R4259 T5145 T5144 arg1Of amplification,PCR
R4260 T5145 T5146 arg1Of amplification,of
R4261 T5145 T5151 arg1Of amplification,was
R4262 T5145 T5152 arg2Of amplification,used
R4263 T5150 T5146 arg2Of DNA,of
R4264 T5150 T5147 arg1Of DNA,4
R4265 T5150 T5148 arg1Of DNA,µl
R4266 T5150 T5149 arg1Of DNA,bisulfite-treated
R4267 T5152 T5151 arg2Of used,was
R4268 T5152 T5153 arg1Of used,for
R4269 T5152 T5167 arg1Of used,into
R4270 T5152 T5179 arg1Of used,(
R4271 T5154 T5153 arg2Of cloning,for
R4272 T5154 T5155 arg1Of cloning,of
R4273 T5157 T5155 arg2Of fragments,of
R4274 T5157 T5156 arg1Of fragments,two
R4275 T5157 T5158 arg1Of fragments,of
R4276 T5157 T5162 arg1Of fragments,(
R4277 T5161 T5158 arg2Of promoter,of
R4278 T5161 T5159 arg1Of promoter,the
R4279 T5161 T5160 arg1Of promoter,IRF-4
R4280 T5163 T5164 arg1Of BS-I,and
R4281 T5164 T5162 arg2Of and,(
R4282 T5165 T5164 arg2Of BS-II,and
R4283 T5166 T5162 arg3Of ),(
R4284 T5169 T5167 arg2Of vector,into
R4285 T5169 T5168 arg1Of vector,pCR2.1
R4286 T5169 T5170 arg1Of vector,with
R4287 T5175 T5170 arg2Of kit’,with
R4288 T5175 T5171 arg1Of kit’,the
R4289 T5175 T5172 arg1Of kit’,‘TOPO
R4290 T5175 T5173 arg1Of kit’,TA
R4291 T5175 T5174 arg1Of kit’,cloning
R4292 T5175 T5176 arg1Of kit’,(
R4293 T5177 T5176 arg2Of Invitrogen,(
R4294 T5178 T5176 arg3Of ),(
R4295 T5180 T5179 arg2Of see,(
R4296 T5182 T5180 arg2Of 3A,see
R4297 T5182 T5181 arg1Of 3A,Figure
R4298 T5183 T5179 arg3Of ),(

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T5488 0-10 JJ denotes Subsequent
T5489 11-14 NNP denotes PCR
T5490 15-28 NN denotes amplification
T5491 29-31 IN denotes of
T5492 32-33 CD denotes 4
T5493 34-36 NN denotes µl
T5494 37-54 JJ denotes bisulfite-treated
T5495 55-58 NN denotes DNA
T5496 59-62 VBD denotes was
T5497 63-67 VBN denotes used
T5498 68-71 IN denotes for
T5499 72-79 NN denotes cloning
T5500 80-82 IN denotes of
T5501 83-86 CD denotes two
T5502 87-96 NNS denotes fragments
T5503 97-99 IN denotes of
T5504 100-103 DT denotes the
T5505 104-109 NN denotes IRF-4
T5506 110-118 NN denotes promoter
T5507 119-120 -LRB- denotes (
T5508 120-124 NNP denotes BS-I
T5509 125-128 CC denotes and
T5510 129-134 NNP denotes BS-II
T5511 134-135 -RRB- denotes )
T5512 136-140 IN denotes into
T5513 141-145 JJ denotes pCR2
T5514 145-147 CD denotes .1
T5515 148-154 NN denotes vector
T5516 155-159 IN denotes with
T5517 160-163 DT denotes the
T5518 165-169 NNP denotes TOPO
T5519 170-172 NNP denotes TA
T5520 173-180 VBG denotes cloning
T5521 181-184 NN denotes kit
T5522 186-187 -LRB- denotes (
T5523 187-197 NNP denotes Invitrogen
T5524 197-198 -RRB- denotes )
T5525 199-200 -LRB- denotes (
T5526 200-203 VB denotes see
T5527 204-210 NN denotes Figure
T5528 211-213 NN denotes 3A
T5529 213-214 -RRB- denotes )
T5530 214-215 . denotes .
R4602 T5488 T5490 amod Subsequent,amplification
R4603 T5489 T5490 compound PCR,amplification
R4604 T5490 T5497 nsubjpass amplification,used
R4605 T5491 T5490 prep of,amplification
R4606 T5492 T5493 nummod 4,µl
R4607 T5493 T5495 nmod µl,DNA
R4608 T5494 T5495 amod bisulfite-treated,DNA
R4609 T5495 T5491 pobj DNA,of
R4610 T5496 T5497 auxpass was,used
R4611 T5497 T5497 ROOT used,used
R4612 T5498 T5497 prep for,used
R4613 T5499 T5498 pobj cloning,for
R4614 T5500 T5499 prep of,cloning
R4615 T5501 T5502 nummod two,fragments
R4616 T5502 T5500 pobj fragments,of
R4617 T5503 T5502 prep of,fragments
R4618 T5504 T5506 det the,promoter
R4619 T5505 T5506 compound IRF-4,promoter
R4620 T5506 T5503 pobj promoter,of
R4621 T5507 T5506 punct (,promoter
R4622 T5508 T5506 appos BS-I,promoter
R4623 T5509 T5508 cc and,BS-I
R4624 T5510 T5508 conj BS-II,BS-I
R4625 T5511 T5506 punct ),promoter
R4626 T5512 T5497 prep into,used
R4627 T5513 T5515 amod pCR2,vector
R4628 T5514 T5515 nummod .1,vector
R4629 T5515 T5512 pobj vector,into
R4630 T5516 T5515 prep with,vector
R4631 T5517 T5521 det the,kit
R4632 T5518 T5519 compound TOPO,TA
R4633 T5519 T5520 nsubj TA,cloning
R4634 T5520 T5521 compound cloning,kit
R4635 T5521 T5516 pobj kit,with
R4636 T5522 T5521 punct (,kit
R4637 T5523 T5521 appos Invitrogen,kit
R4638 T5524 T5521 punct ),kit
R4639 T5525 T5521 punct (,kit
R4640 T5526 T5497 xcomp see,used
R4641 T5527 T5528 compound Figure,3A
R4642 T5528 T5526 dobj 3A,see
R4643 T5529 T5526 punct ),see
R4644 T5530 T5497 punct .,used

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T5649 104-118 Protein denotes IRF-4 promoter

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T4931 104-109 Protein denotes IRF-4

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T5271 104-109 Q15306 denotes IRF-4

test2

Id Subject Object Predicate Lexical cue
T4930 104-109 Protein denotes IRF-4