PMC:1310901 / 108-351 JSONTXT

{"project":"bionlp-st-ge-2016-reference-eval","denotations":[{"id":"T871","span":{"begin":61,"end":64},"obj":"Protein"},{"id":"T872","span":{"begin":65,"end":68},"obj":"Protein"},{"id":"T873","span":{"begin":208,"end":220},"obj":"Regulation"}],"text":"of CpG motifs in the promoter region \n\nAbstract\nAlthough the bcr-abl translocation has been shown to be the causative genetic aberration in chronic myeloid leukemia (CML), there is mounting evidence that the deregulation of other genes, such a"}

{"project":"events-check-again","denotations":[{"id":"T807","span":{"begin":61,"end":64},"obj":"Protein"},{"id":"T808","span":{"begin":65,"end":68},"obj":"Protein"},{"id":"T809","span":{"begin":208,"end":220},"obj":"Regulation"}],"attributes":[{"id":"M35","pred":"Negation","subj":"T809","obj":"true"}],"text":"of CpG motifs in the promoter region \n\nAbstract\nAlthough the bcr-abl translocation has been shown to be the causative genetic aberration in chronic myeloid leukemia (CML), there is mounting evidence that the deregulation of other genes, such a"}

{"project":"sentences","denotations":[{"id":"T2","span":{"begin":39,"end":47},"obj":"Sentence"}],"namespaces":[{"prefix":"_base","uri":"http://pubannotation.org/ontology/tao.owl#"}],"text":"of CpG motifs in the promoter region \n\nAbstract\nAlthough the bcr-abl translocation has been shown to be the causative genetic aberration in chronic myeloid leukemia (CML), there is mounting evidence that the deregulation of other genes, such a"}

{"project":"pmc-enju-pas","denotations":[{"id":"T143","span":{"begin":0,"end":2},"obj":"IN"},{"id":"T144","span":{"begin":3,"end":6},"obj":"NN"},{"id":"T145","span":{"begin":7,"end":13},"obj":"NN"},{"id":"T146","span":{"begin":14,"end":16},"obj":"IN"},{"id":"T147","span":{"begin":17,"end":20},"obj":"DT"},{"id":"T148","span":{"begin":21,"end":29},"obj":"NN"},{"id":"T149","span":{"begin":30,"end":36},"obj":"NN"},{"id":"T150","span":{"begin":48,"end":56},"obj":"IN"},{"id":"T151","span":{"begin":57,"end":60},"obj":"DT"},{"id":"T152","span":{"begin":61,"end":68},"obj":"NN"},{"id":"T153","span":{"begin":69,"end":82},"obj":"NN"},{"id":"T154","span":{"begin":83,"end":86},"obj":"VB"},{"id":"T155","span":{"begin":87,"end":91},"obj":"VB"},{"id":"T156","span":{"begin":92,"end":97},"obj":"VB"},{"id":"T157","span":{"begin":98,"end":100},"obj":"TO"},{"id":"T158","span":{"begin":101,"end":103},"obj":"VB"},{"id":"T159","span":{"begin":104,"end":107},"obj":"DT"},{"id":"T160","span":{"begin":108,"end":117},"obj":"JJ"},{"id":"T161","span":{"begin":118,"end":125},"obj":"JJ"},{"id":"T162","span":{"begin":126,"end":136},"obj":"NN"},{"id":"T163","span":{"begin":137,"end":139},"obj":"IN"},{"id":"T164","span":{"begin":140,"end":147},"obj":"JJ"},{"id":"T165","span":{"begin":148,"end":155},"obj":"JJ"},{"id":"T166","span":{"begin":156,"end":164},"obj":"NN"},{"id":"T167","span":{"begin":165,"end":166},"obj":"-LRB-"},{"id":"T168","span":{"begin":166,"end":169},"obj":"NN"},{"id":"T169","span":{"begin":169,"end":170},"obj":"-RRB-"},{"id":"T170","span":{"begin":170,"end":171},"obj":"-COMMA-"},{"id":"T171","span":{"begin":172,"end":177},"obj":"EX"},{"id":"T172","span":{"begin":178,"end":180},"obj":"VB"},{"id":"T173","span":{"begin":181,"end":189},"obj":"VB"},{"id":"T174","span":{"begin":190,"end":198},"obj":"NN"},{"id":"T175","span":{"begin":199,"end":203},"obj":"IN"},{"id":"T176","span":{"begin":204,"end":207},"obj":"DT"},{"id":"T177","span":{"begin":208,"end":220},"obj":"NN"},{"id":"T178","span":{"begin":221,"end":223},"obj":"IN"},{"id":"T179","span":{"begin":224,"end":229},"obj":"JJ"},{"id":"T180","span":{"begin":230,"end":235},"obj":"NN"},{"id":"T181","span":{"begin":235,"end":236},"obj":"-COMMA-"},{"id":"T182","span":{"begin":237,"end":241},"obj":"JJ"}],"relations":[{"id":"R79","pred":"arg1Of","subj":"T166","obj":"T165"},{"id":"R80","pred":"arg1Of","subj":"T166","obj":"T167"},{"id":"R81","pred":"arg2Of","subj":"T168","obj":"T167"},{"id":"R82","pred":"arg3Of","subj":"T169","obj":"T167"},{"id":"R83","pred":"arg1Of","subj":"T171","obj":"T172"},{"id":"R84","pred":"arg1Of","subj":"T172","obj":"T150"},{"id":"R85","pred":"arg1Of","subj":"T172","obj":"T170"},{"id":"R86","pred":"arg2Of","subj":"T174","obj":"T172"},{"id":"R87","pred":"arg1Of","subj":"T174","obj":"T173"},{"id":"R88","pred":"arg1Of","subj":"T177","obj":"T176"},{"id":"R89","pred":"arg1Of","subj":"T177","obj":"T178"},{"id":"R92","pred":"arg2Of","subj":"T180","obj":"T178"},{"id":"R93","pred":"arg1Of","subj":"T180","obj":"T179"},{"id":"R94","pred":"arg1Of","subj":"T180","obj":"T181"},{"id":"R55","pred":"arg2Of","subj":"T145","obj":"T143"},{"id":"R56","pred":"arg1Of","subj":"T145","obj":"T144"},{"id":"R57","pred":"arg1Of","subj":"T145","obj":"T146"},{"id":"R58","pred":"arg2Of","subj":"T149","obj":"T146"},{"id":"R59","pred":"arg1Of","subj":"T149","obj":"T147"},{"id":"R60","pred":"arg1Of","subj":"T149","obj":"T148"},{"id":"R61","pred":"arg1Of","subj":"T153","obj":"T151"},{"id":"R62","pred":"arg1Of","subj":"T153","obj":"T152"},{"id":"R63","pred":"arg1Of","subj":"T153","obj":"T154"},{"id":"R64","pred":"arg1Of","subj":"T153","obj":"T155"},{"id":"R65","pred":"arg2Of","subj":"T153","obj":"T156"},{"id":"R66","pred":"arg1Of","subj":"T153","obj":"T158"},{"id":"R67","pred":"arg2Of","subj":"T156","obj":"T150"},{"id":"R68","pred":"arg2Of","subj":"T156","obj":"T154"},{"id":"R69","pred":"arg2Of","subj":"T156","obj":"T155"},{"id":"R70","pred":"arg3Of","subj":"T158","obj":"T156"},{"id":"R71","pred":"arg1Of","subj":"T158","obj":"T157"},{"id":"R72","pred":"arg1Of","subj":"T158","obj":"T163"},{"id":"R73","pred":"arg2Of","subj":"T162","obj":"T158"},{"id":"R74","pred":"arg1Of","subj":"T162","obj":"T159"},{"id":"R75","pred":"arg1Of","subj":"T162","obj":"T160"},{"id":"R76","pred":"arg1Of","subj":"T162","obj":"T161"},{"id":"R77","pred":"arg2Of","subj":"T166","obj":"T163"},{"id":"R78","pred":"arg1Of","subj":"T166","obj":"T164"}],"namespaces":[{"prefix":"_base","uri":"http://kmcs.nii.ac.jp/enju/"}],"text":"of CpG motifs in the promoter region \n\nAbstract\nAlthough the bcr-abl translocation has been shown to be the causative genetic aberration in chronic myeloid leukemia (CML), there is mounting evidence that the deregulation of other genes, such a"}

{"project":"bionlp-st-ge-2016-coref","denotations":[{"id":"T386","span":{"begin":224,"end":235},"obj":"Anaphor"}],"namespaces":[{"prefix":"_base","uri":"https://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"of CpG motifs in the promoter region \n\nAbstract\nAlthough the bcr-abl translocation has been shown to be the causative genetic aberration in chronic myeloid leukemia (CML), there is mounting evidence that the deregulation of other genes, such a"}

{"project":"bionlp-st-ge-2016-spacy-parsed","denotations":[{"id":"T434","span":{"begin":0,"end":2},"obj":"IN"},{"id":"T435","span":{"begin":3,"end":6},"obj":"NNP"},{"id":"T436","span":{"begin":7,"end":13},"obj":"NNS"},{"id":"T437","span":{"begin":14,"end":16},"obj":"IN"},{"id":"T438","span":{"begin":17,"end":20},"obj":"DT"},{"id":"T439","span":{"begin":21,"end":29},"obj":"NN"},{"id":"T440","span":{"begin":30,"end":36},"obj":"NN"},{"id":"T441","span":{"begin":48,"end":56},"obj":"IN"},{"id":"T442","span":{"begin":57,"end":60},"obj":"DT"},{"id":"T443","span":{"begin":61,"end":68},"obj":"JJ"},{"id":"T444","span":{"begin":69,"end":82},"obj":"NN"},{"id":"T445","span":{"begin":83,"end":86},"obj":"VBZ"},{"id":"T446","span":{"begin":87,"end":91},"obj":"VBN"},{"id":"T447","span":{"begin":92,"end":97},"obj":"VBN"},{"id":"T448","span":{"begin":98,"end":100},"obj":"TO"},{"id":"T449","span":{"begin":101,"end":103},"obj":"VB"},{"id":"T450","span":{"begin":104,"end":107},"obj":"DT"},{"id":"T451","span":{"begin":108,"end":117},"obj":"JJ"},{"id":"T452","span":{"begin":118,"end":125},"obj":"JJ"},{"id":"T453","span":{"begin":126,"end":136},"obj":"NN"},{"id":"T454","span":{"begin":137,"end":139},"obj":"IN"},{"id":"T455","span":{"begin":140,"end":147},"obj":"JJ"},{"id":"T456","span":{"begin":148,"end":155},"obj":"JJ"},{"id":"T457","span":{"begin":156,"end":164},"obj":"NN"},{"id":"T458","span":{"begin":165,"end":166},"obj":"-LRB-"},{"id":"T459","span":{"begin":166,"end":169},"obj":"NNP"},{"id":"T460","span":{"begin":169,"end":170},"obj":"-RRB-"},{"id":"T461","span":{"begin":170,"end":171},"obj":","},{"id":"T462","span":{"begin":172,"end":177},"obj":"EX"},{"id":"T463","span":{"begin":178,"end":180},"obj":"VBZ"},{"id":"T464","span":{"begin":181,"end":189},"obj":"VBG"},{"id":"T465","span":{"begin":190,"end":198},"obj":"NN"},{"id":"T466","span":{"begin":199,"end":203},"obj":"IN"},{"id":"T467","span":{"begin":204,"end":207},"obj":"DT"},{"id":"T468","span":{"begin":208,"end":220},"obj":"NN"},{"id":"T469","span":{"begin":221,"end":223},"obj":"IN"},{"id":"T470","span":{"begin":224,"end":229},"obj":"JJ"},{"id":"T471","span":{"begin":230,"end":235},"obj":"NNS"},{"id":"T472","span":{"begin":235,"end":236},"obj":","},{"id":"T473","span":{"begin":237,"end":241},"obj":"JJ"}],"relations":[{"id":"R343","pred":"prep","subj":"T454","obj":"T453"},{"id":"R344","pred":"amod","subj":"T455","obj":"T457"},{"id":"R345","pred":"amod","subj":"T456","obj":"T457"},{"id":"R346","pred":"pobj","subj":"T457","obj":"T454"},{"id":"R347","pred":"punct","subj":"T458","obj":"T459"},{"id":"R348","pred":"appos","subj":"T459","obj":"T457"},{"id":"R327","pred":"det","subj":"T438","obj":"T440"},{"id":"R328","pred":"compound","subj":"T439","obj":"T440"},{"id":"R329","pred":"pobj","subj":"T440","obj":"T437"},{"id":"R330","pred":"mark","subj":"T441","obj":"T447"},{"id":"R331","pred":"det","subj":"T442","obj":"T444"},{"id":"R332","pred":"amod","subj":"T443","obj":"T444"},{"id":"R333","pred":"nsubjpass","subj":"T444","obj":"T447"},{"id":"R334","pred":"aux","subj":"T445","obj":"T447"},{"id":"R335","pred":"auxpass","subj":"T446","obj":"T447"},{"id":"R336","pred":"advcl","subj":"T447","obj":"T463"},{"id":"R337","pred":"aux","subj":"T448","obj":"T449"},{"id":"R338","pred":"xcomp","subj":"T449","obj":"T447"},{"id":"R339","pred":"det","subj":"T450","obj":"T453"},{"id":"R340","pred":"amod","subj":"T451","obj":"T453"},{"id":"R341","pred":"amod","subj":"T452","obj":"T453"},{"id":"R342","pred":"attr","subj":"T453","obj":"T449"},{"id":"R349","pred":"punct","subj":"T460","obj":"T447"},{"id":"R350","pred":"punct","subj":"T461","obj":"T463"},{"id":"R351","pred":"expl","subj":"T462","obj":"T463"},{"id":"R352","pred":"ROOT","subj":"T463","obj":"T463"},{"id":"R353","pred":"amod","subj":"T464","obj":"T465"},{"id":"R354","pred":"attr","subj":"T465","obj":"T463"},{"id":"R356","pred":"det","subj":"T467","obj":"T468"},{"id":"R358","pred":"prep","subj":"T469","obj":"T468"},{"id":"R359","pred":"amod","subj":"T470","obj":"T471"},{"id":"R360","pred":"pobj","subj":"T471","obj":"T469"},{"id":"R361","pred":"punct","subj":"T472","obj":"T471"},{"id":"R324","pred":"compound","subj":"T435","obj":"T436"},{"id":"R325","pred":"pobj","subj":"T436","obj":"T434"}],"text":"of CpG motifs in the promoter region \n\nAbstract\nAlthough the bcr-abl translocation has been shown to be the causative genetic aberration in chronic myeloid leukemia (CML), there is mounting evidence that the deregulation of other genes, such a"}

{"project":"bionlp-st-ge-2016-reference-tees","denotations":[{"id":"T841","span":{"begin":61,"end":64},"obj":"Protein"},{"id":"T842","span":{"begin":65,"end":68},"obj":"Protein"},{"id":"T845","span":{"begin":208,"end":220},"obj":"Regulation"},{"id":"T846","span":{"begin":208,"end":220},"obj":"Regulation"}],"text":"of CpG motifs in the promoter region \n\nAbstract\nAlthough the bcr-abl translocation has been shown to be the causative genetic aberration in chronic myeloid leukemia (CML), there is mounting evidence that the deregulation of other genes, such a"}

{"project":"bionlp-st-ge-2016-reference","denotations":[{"id":"T74","span":{"begin":61,"end":64},"obj":"Protein"},{"id":"T75","span":{"begin":65,"end":68},"obj":"Protein"},{"id":"T76","span":{"begin":208,"end":220},"obj":"Regulation"}],"attributes":[{"id":"M24","pred":"Negation","subj":"T76","obj":"true"}],"namespaces":[{"prefix":"_base","uri":"http://bionlp.dbcls.jp/ontology/ge.owl#"}],"text":"of CpG motifs in the promoter region \n\nAbstract\nAlthough the bcr-abl translocation has been shown to be the causative genetic aberration in chronic myeloid leukemia (CML), there is mounting evidence that the deregulation of other genes, such a"}

{"project":"bionlp-st-ge-2016-uniprot","denotations":[{"id":"T393","span":{"begin":61,"end":64},"obj":"P11274"},{"id":"T394","span":{"begin":65,"end":68},"obj":"P00519"}],"namespaces":[{"prefix":"_base","uri":"http://www.uniprot.org/uniprot/"}],"text":"of CpG motifs in the promoter region \n\nAbstract\nAlthough the bcr-abl translocation has been shown to be the causative genetic aberration in chronic myeloid leukemia (CML), there is mounting evidence that the deregulation of other genes, such a"}

{"project":"test2","denotations":[{"id":"T38","span":{"begin":61,"end":64},"obj":"Protein"},{"id":"T39","span":{"begin":65,"end":68},"obj":"Protein"},{"id":"T40","span":{"begin":69,"end":82},"obj":"Localization"}],"relations":[{"id":"R21","pred":"themeOf","subj":"T38","obj":"T40"}],"attributes":[{"id":"M7","pred":"Speculation","subj":"T38","obj":"true"}],"text":"of CpG motifs in the promoter region \n\nAbstract\nAlthough the bcr-abl translocation has been shown to be the causative genetic aberration in chronic myeloid leukemia (CML), there is mounting evidence that the deregulation of other genes, such a"}