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PMC:1310901 / 0-308 JSONTXT

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bionlp-st-ge-2016-reference-eval

Id Subject Object Predicate Lexical cue
T868 0-15 Negative_regulation denotes Down-regulation
T869 19-49 Protein denotes interferon regulatory factor 4
T870 55-65 Gene_expression denotes expression
T871 169-172 Protein denotes bcr
T872 173-176 Protein denotes abl
R630 T869 T870 themeOf interferon regulatory factor 4,expression
R631 T870 T868 themeOf expression,Down-regulation

events-check-again

Id Subject Object Predicate Lexical cue
T804 0-15 Negative_regulation denotes Down-regulation
T805 19-49 Protein denotes interferon regulatory factor 4
T806 55-65 Gene_expression denotes expression
T807 169-172 Protein denotes bcr
T808 173-176 Protein denotes abl
R692 T805 T806 themeOf interferon regulatory factor 4,expression
R693 T806 T804 themeOf expression,Down-regulation

GO-CC

Id Subject Object Predicate Lexical cue
T698 78-83 http://purl.obolibrary.org/obo/GO_0005623 denotes cells

sentences

Id Subject Object Predicate Lexical cue
T105 0-144 Sentence denotes Down-regulation of interferon regulatory factor 4 gene expression in leukemic cells due to hypermethylation of CpG motifs in the promoter region
T1 0-144 Sentence denotes Down-regulation of interferon regulatory factor 4 gene expression in leukemic cells due to hypermethylation of CpG motifs in the promoter region
T2 147-155 Sentence denotes Abstract

pmc-enju-pas

Id Subject Object Predicate Lexical cue
T129 0-15 NN denotes Down-regulation
T130 16-18 IN denotes of
T131 19-29 NN denotes interferon
T132 30-40 JJ denotes regulatory
T133 41-47 NN denotes factor
T134 48-49 CD denotes 4
T135 50-54 NN denotes gene
T136 55-65 NN denotes expression
T137 66-68 IN denotes in
T138 69-77 JJ denotes leukemic
T139 78-83 NN denotes cells
T140 84-87 JJ denotes due
T141 88-90 TO denotes to
T142 91-107 NN denotes hypermethylation
T143 108-110 IN denotes of
T144 111-114 NN denotes CpG
T145 115-121 NN denotes motifs
T146 122-124 IN denotes in
T147 125-128 DT denotes the
T148 129-137 NN denotes promoter
T149 138-144 NN denotes region
T150 156-164 IN denotes Although
T151 165-168 DT denotes the
T152 169-176 NN denotes bcr-abl
T153 177-190 NN denotes translocation
T154 191-194 VB denotes has
T155 195-199 VB denotes been
T156 200-205 VB denotes shown
T157 206-208 TO denotes to
T158 209-211 VB denotes be
T159 212-215 DT denotes the
T160 216-225 JJ denotes causative
T161 226-233 JJ denotes genetic
T162 234-244 NN denotes aberration
T163 245-247 IN denotes in
T164 248-255 JJ denotes chronic
T165 256-263 JJ denotes myeloid
T166 264-272 NN denotes leukemia
T167 273-274 -LRB- denotes (
T168 274-277 NN denotes CML
T169 277-278 -RRB- denotes )
T170 278-279 -COMMA- denotes ,
T171 280-285 EX denotes there
T172 286-288 VB denotes is
T173 289-297 VB denotes mounting
T174 298-306 NN denotes evidence
R41 T129 T130 arg1Of Down-regulation,of
R79 T166 T165 arg1Of leukemia,myeloid
R80 T166 T167 arg1Of leukemia,(
R81 T168 T167 arg2Of CML,(
R82 T169 T167 arg3Of ),(
R83 T171 T172 arg1Of there,is
R84 T172 T150 arg1Of is,Although
R85 T172 T170 arg1Of is,","
R86 T174 T172 arg2Of evidence,is
R87 T174 T173 arg1Of evidence,mounting
R42 T129 T137 arg1Of Down-regulation,in
R43 T136 T130 arg2Of expression,of
R44 T136 T131 arg1Of expression,interferon
R45 T136 T132 arg1Of expression,regulatory
R46 T136 T133 arg1Of expression,factor
R47 T136 T134 arg1Of expression,4
R48 T136 T135 arg1Of expression,gene
R49 T139 T137 arg2Of cells,in
R50 T139 T138 arg1Of cells,leukemic
R51 T139 T140 arg1Of cells,due
R52 T140 T141 arg1Of due,to
R53 T142 T141 arg2Of hypermethylation,to
R54 T142 T143 arg1Of hypermethylation,of
R55 T145 T143 arg2Of motifs,of
R56 T145 T144 arg1Of motifs,CpG
R57 T145 T146 arg1Of motifs,in
R58 T149 T146 arg2Of region,in
R59 T149 T147 arg1Of region,the
R60 T149 T148 arg1Of region,promoter
R61 T153 T151 arg1Of translocation,the
R62 T153 T152 arg1Of translocation,bcr-abl
R63 T153 T154 arg1Of translocation,has
R64 T153 T155 arg1Of translocation,been
R65 T153 T156 arg2Of translocation,shown
R66 T153 T158 arg1Of translocation,be
R67 T156 T150 arg2Of shown,Although
R68 T156 T154 arg2Of shown,has
R69 T156 T155 arg2Of shown,been
R70 T158 T156 arg3Of be,shown
R71 T158 T157 arg1Of be,to
R72 T158 T163 arg1Of be,in
R73 T162 T158 arg2Of aberration,be
R74 T162 T159 arg1Of aberration,the
R75 T162 T160 arg1Of aberration,causative
R76 T162 T161 arg1Of aberration,genetic
R77 T166 T163 arg2Of leukemia,in
R78 T166 T164 arg1Of leukemia,chronic

bionlp-st-ge-2016-spacy-parsed

Id Subject Object Predicate Lexical cue
T420 0-15 NN denotes Down-regulation
T421 16-18 IN denotes of
T422 19-29 NN denotes interferon
T423 30-40 JJ denotes regulatory
T424 41-47 NN denotes factor
T425 48-49 CD denotes 4
T426 50-54 NN denotes gene
T427 55-65 NN denotes expression
T428 66-68 IN denotes in
T429 69-77 JJ denotes leukemic
T430 78-83 NNS denotes cells
T431 84-87 JJ denotes due
T432 88-90 TO denotes to
T433 91-107 NN denotes hypermethylation
T434 108-110 IN denotes of
T435 111-114 NNP denotes CpG
T436 115-121 NNS denotes motifs
T437 122-124 IN denotes in
T438 125-128 DT denotes the
T439 129-137 NN denotes promoter
T440 138-144 NN denotes region
T441 156-164 IN denotes Although
T442 165-168 DT denotes the
T443 169-176 JJ denotes bcr-abl
T444 177-190 NN denotes translocation
T445 191-194 VBZ denotes has
T446 195-199 VBN denotes been
T447 200-205 VBN denotes shown
T448 206-208 TO denotes to
T449 209-211 VB denotes be
T450 212-215 DT denotes the
T451 216-225 JJ denotes causative
T452 226-233 JJ denotes genetic
T453 234-244 NN denotes aberration
T454 245-247 IN denotes in
T455 248-255 JJ denotes chronic
T456 256-263 JJ denotes myeloid
T457 264-272 NN denotes leukemia
T458 273-274 -LRB- denotes (
T459 274-277 NNP denotes CML
T460 277-278 -RRB- denotes )
T461 278-279 , denotes ,
T462 280-285 EX denotes there
T463 286-288 VBZ denotes is
T464 289-297 VBG denotes mounting
T465 298-306 NN denotes evidence
R343 T454 T453 prep in,aberration
R344 T455 T457 amod chronic,leukemia
R345 T456 T457 amod myeloid,leukemia
R346 T457 T454 pobj leukemia,in
R347 T458 T459 punct (,CML
R348 T459 T457 appos CML,leukemia
R326 T437 T433 prep in,hypermethylation
R327 T438 T440 det the,region
R328 T439 T440 compound promoter,region
R329 T440 T437 pobj region,in
R330 T441 T447 mark Although,shown
R331 T442 T444 det the,translocation
R332 T443 T444 amod bcr-abl,translocation
R333 T444 T447 nsubjpass translocation,shown
R334 T445 T447 aux has,shown
R335 T446 T447 auxpass been,shown
R336 T447 T463 advcl shown,is
R337 T448 T449 aux to,be
R338 T449 T447 xcomp be,shown
R339 T450 T453 det the,aberration
R340 T451 T453 amod causative,aberration
R341 T452 T453 amod genetic,aberration
R342 T453 T449 attr aberration,be
R349 T460 T447 punct ),shown
R350 T461 T463 punct ",",is
R351 T462 T463 expl there,is
R352 T463 T463 ROOT is,is
R353 T464 T465 amod mounting,evidence
R354 T465 T463 attr evidence,is
R318 T429 T430 amod leukemic,cells
R319 T430 T428 pobj cells,in
R320 T431 T420 amod due,Down-regulation
R321 T432 T431 pcomp to,due
R322 T433 T432 pobj hypermethylation,to
R323 T434 T433 prep of,hypermethylation
R324 T435 T436 compound CpG,motifs
R325 T436 T434 pobj motifs,of
R309 T420 T420 ROOT Down-regulation,Down-regulation
R310 T421 T420 prep of,Down-regulation
R311 T422 T424 nmod interferon,factor
R312 T423 T424 amod regulatory,factor
R313 T424 T421 pobj factor,of
R314 T425 T427 nummod 4,expression
R315 T426 T427 compound gene,expression
R316 T427 T420 conj expression,Down-regulation
R317 T428 T427 prep in,expression

GO-BP

Id Subject Object Predicate Lexical cue
T114 5-15 http://purl.obolibrary.org/obo/GO_0065007 denotes regulation
T117 50-65 http://purl.obolibrary.org/obo/GO_0010467 denotes gene expression

bionlp-st-ge-2016-reference-tees

Id Subject Object Predicate Lexical cue
T838 19-54 Protein denotes interferon regulatory factor 4 gene
T839 55-65 Gene_expression denotes expression
T840 0-15 Negative_regulation denotes Down-regulation
T841 169-172 Protein denotes bcr
T842 173-176 Protein denotes abl
R615 T838 T839 themeOf interferon regulatory factor 4 gene,expression
R616 T839 T840 themeOf expression,Down-regulation

bionlp-st-ge-2016-reference

Id Subject Object Predicate Lexical cue
T71 0-15 Negative_regulation denotes Down-regulation
T72 19-49 Protein denotes interferon regulatory factor 4
T73 55-65 Gene_expression denotes expression
T74 169-172 Protein denotes bcr
T75 173-176 Protein denotes abl
R648 T72 T73 themeOf interferon regulatory factor 4,expression
R649 T73 T71 themeOf expression,Down-regulation

bionlp-st-ge-2016-uniprot

Id Subject Object Predicate Lexical cue
T388 19-49 Q02556 denotes interferon regulatory factor 4
T389 19-49 Q14653 denotes interferon regulatory factor 4
T390 19-49 Q92985 denotes interferon regulatory factor 4
T391 19-49 Q15306 denotes interferon regulatory factor 4
T392 19-49 Q13568 denotes interferon regulatory factor 4
T393 169-172 P11274 denotes bcr
T394 173-176 P00519 denotes abl

test2

Id Subject Object Predicate Lexical cue Negation Speculation
T35 0-15 Negative_regulation denotes Down-regulation
T36 19-49 Protein denotes interferon regulatory factor 4
T37 55-65 Gene_expression denotes expression true
T38 169-172 Protein denotes bcr true
T39 173-176 Protein denotes abl
T40 177-190 Localization denotes translocation
R19 T36 T37 themeOf interferon regulatory factor 4,expression
R20 T37 T35 themeOf expression,Down-regulation
R21 T38 T40 themeOf bcr,translocation